TCONS_00025996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025996
Unique NameTCONS_00025996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025996 ID=TCONS_00025996|Name=TCONS_00025996|organism=Clytia hemisphaerica|type=transcript|length=213bp
ATTTGGATAAATGATTGTTATCATCTGCTCCACACTTTCATAAGATTTCC
CTTCCAAAGTGACTCGTTTGGTTTGCGATTCCTTGAAACTTCCATTGAAC
ATTTTATCGAAGTAAGGTGAAGCCAGGGATAATATCATGGAATGAACGTG
AAGTTCTTTTTCTTCAACAACCAAAACGGCATCGCTGTTTTGCcatgctt
ttgaaaatggtCC
Run BLAST on NCBI

transcript from alignment at sc0000559:210398..219437+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025996 ID=TCONS_00025996|Name=TCONS_00025996|organism=Clytia hemisphaerica|type=transcript|length=9040bp|location=Sequence derived from alignment at sc0000559:210398..219437+ (Clytia hemisphaerica)
ATTTGGATAAATGATTGTTATCATCTGCTCCACACTTTCATAAGATTTCC
CTTCCAAAGTGACTCGTTTGGTTTGCGATTCCTTGAAACTTCCATTGAAC
ATTTTATCGAAGTAAGGTGAAGCCAAAGATAATATCATGGAATGAACGTG
AAGTTCTTTTTCTTCAACAACCAAAACTGCATCACTGTTTTGCCATGCTT
TTGAAAACGGTCCTTTTTCTTGCTCAACATCCCCAATAACTTCCTTCATT
GCTGATTCTTCTTTTGACATATCCCTTGCTAACCAAAAAACAAATGTCAG
GTCATCAATTTGAACAAATGAACAGAGATTTTTTCTCAACTTTTCGCGAA
ATCCTAATCTAATTTTATCCTTTATGTAATTGTGTAAAGAATTAGATTTT
ATTTAATTCACCATTCAGTTctcagaaaaatattcattgaTAAATTATTT
ATCAAAGATTCTAAAAGATTCTTTGAGAAATTATTGAGCCAAATAGAATA
AACCATTAATCATATCGTTGTTATCTTACGCAAAAAACCCTGAAATAGTT
TTTATCCGAATAAGACTAGAAAAGCAAAAGCTCCCGCTTAGCAATATTTT
TACTAAGGTGTTGTGATCCTTTTtacctttttattcaattttggtGGACA
AGATTCACCAAGATTTTAttcgattgaataaaaaaagggAAACCCTTCCT
CACTGAAATGACGTCAACAGTTATCATCGGCCACGCTGACGGGAATACCG
ACCTGGTGCATAGAATTCTAAAATACGACGCCCTTTTTCATTTAGGAGAA
TTTTGGATATCACCTTCTATCCTTCACCGTGTTGTAACAATAACAACAAA
GCAAAAAATTGGGATTTCTAGTCCAAGCGGTTCCAATATCTGTGTTTAAA
GCTACGGTGATAAGGTGTTGGGCATTGCTATCATACgtccaaaagagatt
ttttgagacttctattctattttACCGAATTGACTGATATCACCCGTCAC
CTGCCAAATTCAAATTTACCATTCCAACTCTACTTAAGTTACAGTGCACG
AAATTCAACAAACCGATCTTTATTTGTGGAATCATCAGTATATTGCAATC
atagtatttgagaaaaaagtgaaaatccctCGAAATCTTATAGCtgcaaa
cgatttggaagcgctctaacttaggcTGGAAGAGTAGATTTTTAAGGGTT
ATAACGCTAGGCTTAAGACTTAAGATGTGAGGGTCTAAAAGACCAAAAAT
TGTCCTATAATGCTCAGAATATAGCATGGAAgcaggcacgacgcaacggg
tatGGCAGGTACGGCGACCGCAAAATTTTCCTCTTCTtcggtaaaatcgc
ttaaatttcctcactcgccgtaccagatataaaaagcttccgtcgtgcct
ggtGGAAGTCGATAAACCCCTcctaaattgaaatattcgattacattAAA
CAGATAGCCCAagtgactttctcgcccgattttcaaatttcgaaaaacca
GGAATGAAattaccaaaattttcaaaatatatcggTGCAGATTCTAGCTT
TTTCAGAATCAACTTTaaaagtacacgctttttttataagaacagaatag
aatacactttataagaatgtccatgatgaaaatggcgaaaaatttaagaa
tactggaatgctaagaatatcacgatcatggaattttgctactcaagcta
agaatgtcttttttgagcattttcaattataaattatcaattagCCCTTA
agtaaccctttaagtgccagggtccttttttctaagtttttttttaaaaa
ttgctagttcaaactttaagggcttatatcttctGATCTAGAATGAATTA
GAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naaaataacgatttctaaatcaaactgggcattacaggagggcttcgccc
tcctatatagcccatgtcgtatatatacgacatcggcacttaaagggtta
agtaaggctcactcctttcacaaaaacgccattttatgcttgagacgtac
agtatatggcccccaaaacggagacggcccccaaaacggaggttttcatt
gaaatgaagattctgacttgtagatttatcagagtTAAACGANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNttcagaaaatgcaaatacatctgtgactttagaggctgggtaaa
agatatagcatcttgaaggtcaaccagtattttggagccgtagaatcagc
attgacaaaaccgaaaattcttaatatgagaaaaggcaaaaaatcttgga
attctactcctatcaccttgagttaatagtttataacaaaaaattaaaat
tatatataaaattttttgctgaatcagcaaaaacggcaaatgtaattttt
ttgcaaaatataggagaaaaatatctttaaagcttaatattttcagtttc
agttaagctttttttctaaaatttcacagcttattccatacatgaatgga
actattttcaaaagagatttgttttcaaaaaattgattaaaagacgttgt
taaatcaaaattgtcattttgaaaatttctaaattttcagtttggactta
ataatgcaatatcgaaaatcttgaaataatttcataaattttacatccat
cgggtcgtaaatttaagggaaaacacaaatatgtttatagtttttccccc
tattaccactgggcttaataatttgattttaactNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctcgagaaatcgctaaaat
ttcaaacctccgttttgggggccattagaaaaaagctacctatctttaag
cgattgaaaaatattgttgaaattgaaaattttaaaagagaacttccagg
aaataaagtagagatgttaaaggttttcatgcagcaaaaatttttgtaat
ttgtaaaatctcttttcctctagatttgagagaaatttcaaatttgatcg
ccgtttagggggccacatactgtatgtactaaatgttaaatccgGTCTGA
ATTagaagaatgctgtaagaatattttaagatgattttcccccCGGGgag
gcactgggtttgcggaatgacggtatgtgcgggccaacaATTGgttttta
aaattgcacccttacagtgaagCAAAGATTAGTGAAAATCATActcttag
agtgcattttcctccaaattttcgatccctttcgtgcaaaaaatggtttt
tggtcaaaatatctagatttttcaagaattttctgaaatttctaccttta
cagtgcattttaaacatatcggaaaaggtacccttagtacccgcacatac
ccgtcggtccttttgcccagctgccccacCCCGGGGATTTTCCCaagaaa
gttaagaatatcatccatgataaaatggatttacaccgttcttataaaaa
aagcgtgtatatctttcgatggaataattattttcagaatttttttcaca
ttaatgatgttctaagattaaagaattactcgtgtgaaaatgataattat
agcacagttattgaagaagttgattttcttcttcttcgttttcaatCTTC
GTTTCCGAtcttttttgaggtttttctTTATGACAATATCCCACTCCatt
ttgtcttttcaacgagcataAAATTgctacttaattcaaattctatcaaa
agttattgaggtttgaaaaaacactgccagttaatttgaaatagacttta
gctCTTTTAGAATTGACTTTGGGAGTATTCTTTTTTCGCAATAGTTTACA
CCCCCATTTAAATACGGTTTCTCATTGCTAATTTGGCTGCTGgtaaattg
tcaaaaattttcattaaaagggGGGTCATGTTAAGTCCACTAAGATCGAG
TAACAACGGTGGAAAGGTTCTGTACATGAacattttattgttcaactaaa
aagatgtaaaagtataaaaaatagTAAGTAAAAGTCGTATATTCCAGaaa
agcaaatgaaaataataCTGGATGAAATtctcagaagaaaaatgaatgat
aaatttttacataatcaatcaatcatttaaaaaaacaaataaaattgacC
AGAGGATTAAAAATAAGGAATCCTATCATTACTCGTCGATCATGTCTTTG
GCCATAAATTGGATTATGTCCATGCCTCTTTTGACCATACCATAATTTCT
GATATCATGCTTCCCTTTCCAATTCATTGCCTTCCCATATTGCTGAAAAC
CACTTTCAATATTTCTCTGCGCCTCTTGAAGTTTCAAGCCCTTCAGTTTA
TTCTTAATTTCCAAGCGAACAGTAGATGACCTTATTAACCCTCGCGTAAA
GGAGTCGTATTGTTGAGATAGCTTCTTTGCACAATTCTCAATAGCTTCTT
TACAATCCAAAGAATCTGCCAATTCCCACAATTTGACAACGCGGTCCTTT
TGATAAAACTGGTTCGGCTTGCTTAGTAAAAGAACTTCGTTGAGAACTGC
ACTCTTTACGGAAGGCACCATGAATTCTTCCGATATTTGATTGAGTCCCT
TCAACATCTCACTGgcaactgaaaataaatttttaaatcttaTTTTAAAT
AGACACGTCCCGTGGGGGGATGTATTGTGGATTGTGGGGGAGCACTTGAT
CTAAAAACTTCCGTATGTGCGGCCAAAAATTAGACCTTTCAAATCGGATA
CTtgcagtgcagagaaaatttaccCAAATTGGAGTAATCTTTTCCAACGG
TAGGAGCTGCCCCTTTGAGAGGGACGTTTAAAATCTCGGCAAAAACTAAG
ATATAATACCGAGCTTGTAGATAAATAAGctttgcattttcttgaaaatc
tttGTCCATTTACGGCAAAATATGACCAGATATTCGctattttacaccct
tagaatGCGCTCTTTCTCaactttgctcatttcgaccctcaCATTGCACT
TTGGGAAACTTGGAAAAGGATCTttaaaaccccccccccccccccgggcc
cttGCTGacctggaaaaaatttttttaaaccccccccccccccccgggcc
cttGCTGacctggaaaaaatttttttaaaccccccccccccccccgggcc
cttGCTGacctggaaaaaatttttttaaacccccccccccccccacgggA
CCTTTTAAGAAGAATACTGTGTTAAATAATAAGTGGATATGTAAAAGAAA
ATTCATACCTAATTCACCGTTTTCAACATTTGGATAAATGATCTTCAACA
TTTGCTCCATCAGCTCAAAAGACTTCCCTTCCAAAGTGACTCGTTTGGTT
TGCGATTCTTTGAAATTTCCATTGAACATTTTTTCGAAGTAAGGTGAAGC
CAGGGATAATATCATGGAATGAACGTGAAGTTCTTTTTCTTCAACAACCA
AAACGGCATCGCTGTTTTGCcatgcttttgaaaatggtCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014630XLOC_014630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025996-exon-sc0000559-1491911889:210398..210513TCONS_00025996-exon-sc0000559-1491911889:210398..210513Clytia hemisphaericaexon
TCONS_00025996-exon-sc0000559-1510915933:210398..210513TCONS_00025996-exon-sc0000559-1510915933:210398..210513Clytia hemisphaericaexon
TCONS_00025996-exon-sc0000559-1575043694:210398..210513TCONS_00025996-exon-sc0000559-1575043694:210398..210513Clytia hemisphaericaexon
TCONS_00025996-exon-sc0000559-1491911889:219341..219437TCONS_00025996-exon-sc0000559-1491911889:219341..219437Clytia hemisphaericaexon
TCONS_00025996-exon-sc0000559-1510915933:219341..219437TCONS_00025996-exon-sc0000559-1510915933:219341..219437Clytia hemisphaericaexon
TCONS_00025996-exon-sc0000559-1575043694:219341..219437TCONS_00025996-exon-sc0000559-1575043694:219341..219437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000559supercontigsc0000559:210398..219437 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.000752481	0	0	0.586097	0	1.2673	0	1.36697	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top