TCONS_00025987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025987
Unique NameTCONS_00025987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025987 ID=TCONS_00025987|Name=TCONS_00025987|organism=Clytia hemisphaerica|type=transcript|length=706bp
ATAAAACGGCATGTTTTTAATGAGGCCgccaaaaaatgtttagttttCAT
GCACAGCGGATAACCAATTAATATAAAATGGTTGATGCGGTGATTGAAAA
AAAGGGTATAAATGTTGATTAAGGGGAGGAAAAGGTGGATCAGAAGCAGT
TGTATATTTGTGAGTGAGGGAAGAAGTCATTCATTCGGTTGAAAGTCAAG
AAGAAAGATGAAGAGTGTAGCTTGCCTGTTGTTGATTGCTCTCATTGTGG
TTGAGGGCCGCTCCTTAAATCCCTTGAGAAGCATTAAAAGTTGGGGAGAT
TCTGGAACACAAAAAGGGTTGTGGGGAGACCAGATGCAGGATCAAGAACG
ACGACAAGCACCAGCAGGTCTCTGGGTAGGTGACGAAACATCCATCCCAC
ATTTTCCTGAAGATGAAGATACAAGAATCCCACTTTTCTTGAATGATGCT
CGTCCACATTTAAGCGGAATATCTGAATGGCGGAAAAGGCAAGTTCCGTT
ATTCTACAATGATCATATTCCATCATTCTTTCACGATGAAATGAGTGACG
AGGACGAAGAATCAACGGAGAAAAGACAAGCAGTACCAGTCTACTATAAC
AAAGATATGGGTCATCACTATGGAATATGGAAAAAGGAAATCCTCAATGC
TATCGCAAAAGAATTGAAAGCGAAAGATTCGTCACCGGTTAAAGATCAGA
TGAANN
Run BLAST on NCBI

protein sequence of TCONS_00025987-protein

>TCONS_00025987-protein ID=TCONS_00025987-protein|Name=TCONS_00025987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MKSVACLLLIALIVVEGRSLNPLRSIKSWGDSGTQKGLWGDQMQDQERRQ
APAGLWVGDETSIPHFPEDEDTRIPLFLNDARPHLSGISEWRKRQVPLFY
NDHIPSFFHDEMSDEDEESTEKRQAVPVYYNKDMGHHYGIWKKEILNAIA
KELKAKDSSPVKDQMX
Run BLAST on NCBI

transcript from alignment at sc0000559:72957..73662+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025987 ID=TCONS_00025987|Name=TCONS_00025987|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at sc0000559:72957..73662+ (Clytia hemisphaerica)
ATAAAACGGCATGTTTTTAATGAGGCCgccaaaaaatgtttagttttCAT
GCACAGCGGATAACCAATTAATATAAAATGGTTGATGCGGTGATTGAAAA
AAAGGGTATAAATGTTGATTAAGGGGAGGAAAAGGTGGATCAGAAGCAGT
TGTATATTTGTGAGTGAGGGAAGAAGTCATTCATTCGGTTGAAAGTCAAG
AAGAAAGATGAAGAGTGTAGCTTGCCTGTTGTTGATTGCTCTCATTGTGG
TTGAGGGCCGCTCCTTAAATCCCTTGAGAAGCATTAAAAGTTGGGGAGAT
TCTGGAACACAAAAAGGGTTGTGGGGAGACCAGATGCAGGATCAAGAACG
ACGACAAGCACCAGCAGGTCTCTGGGTAGGTGACGAAACATCCATCCCAC
ATTTTCCTGAAGATGAAGATACAAGAATCCCACTTTTCTTGAATGATGCT
CGTCCACATTTAAGCGGAATATCTGAATGGCGGAAAAGGCAAGTTCCGTT
ATTCTACAATGATCATATTCCATCATTCTTTCACGATGAAATGAGTGACG
AGGACGAAGAATCAACGGAGAAAAGACAAGCAGTACCAGTCTACTATAAC
AAAGATATGGGTCATCACTATGGAATATGGAAAAAGGAAATCCTCAATGC
TATCGCAAAAGAATTGAAAGCGAAAGATTCGTCACCGGTTAAAGATCAGA
TGAANN

Coding sequence (CDS) from alignment at sc0000559:72957..73662+

>TCONS_00025987 ID=TCONS_00025987|Name=TCONS_00025987|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000559:72957..73662+ (Clytia hemisphaerica)
ATGAAGAGTGTAGCTTGCCTGTTGTTGATTGCTCTCATTGTGGTTGAGGG
CCGCTCCTTAAATCCCTTGAGAAGCATTAAAAGTTGGGGAGATTCTGGAA
CACAAAAAGGGTTGTGGGGAGACCAGATGCAGGATCAAGAACGACGACAA
GCACCAGCAGGTCTCTGGGTAGGTGACGAAACATCCATCCCACATTTTCC
TGAAGATGAAGATACAAGAATCCCACTTTTCTTGAATGATGCTCGTCCAC
ATTTAAGCGGAATATCTGAATGGCGGAAAAGGCAAGTTCCGTTATTCTAC
AATGATCATATTCCATCATTCTTTCACGATGAAATGAGTGACGAGGACGA
AGAATCAACGGAGAAAAGACAAGCAGTACCAGTCTACTATAACAAAGATA
TGGGTCATCACTATGGAATATGGAAAAAGGAAATCCTCAATGCTATCGCA
AAAGAATTGAAAGCGAAAGATTCGTCACCGGTTAAAGATCAGATGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014624XLOC_014624Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025987-proteinTCONS_00025987-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025987-exon-sc0000559-1491911889:72957..73662TCONS_00025987-exon-sc0000559-1491911889:72957..73662Clytia hemisphaericaexon
TCONS_00025987-exon-sc0000559-1510915933:72957..73662TCONS_00025987-exon-sc0000559-1510915933:72957..73662Clytia hemisphaericaexon
TCONS_00025987-exon-sc0000559-1575043694:72957..73662TCONS_00025987-exon-sc0000559-1575043694:72957..73662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000559supercontigsc0000559:72957..73662 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.285535	0.0755073	0	0.239331	0.356239	1.36578	1.33179	1.73122	0.598366	0.411456	0.736228	0.682752	1.93726	1.57975	1.9055	1.6108	62.8295	70.9314	0.912487	2.67617	237.804	221.323	78.3857	137.291	211.21	222.098	0.849385	1.07139	0.799317	0.409465
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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