TCONS_00025942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025942
Unique NameTCONS_00025942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025942 ID=TCONS_00025942|Name=TCONS_00025942|organism=Clytia hemisphaerica|type=transcript|length=2272bp
cCTTGCACTGCTGTGATTCAAGACCATCTTCAAGATTTTGTTTATGTTCT
TTCCTAGAATTTTGTTGTGAAAAATTGTCCACCATGTTTGCCTTTGAAGC
TCAGAGCTTCATTAATTCGAAAGTATTTCTTTGTGCAGATCCATCGATGA
GAAGATGTGTCCAAATAATATAAATAACAATGTTTGAGACTCTGAAAAAC
GTTATGAAAGTTCTGTTGCACGCTCGCGATACGACGCCATCTTGGTTTTG
GAAGAAATGGAACTTCTCGGAAAAGTCAATTTCAAAGAGGGGAGCTTTGT
AAACAACTTTGTAAAGTGATATCTAATGTATAATCTCTCAATTGAAGCAA
ATGATTTTCTCTTAGATCAAAATGAGCGCAAATTTTGCATATAATAAAGA
TTTTGGGAAAATAGTCAGGAGCAGTTGTAATTATGCTTCATGAAATTAAG
TAtatttaccccctgaaattTGAGTATGTTACATTCTCCGTGCTGTGTGG
CTTCCCCTCCCAAAGACCACGGAGACCAACAAACCTCAAGGTTCCGAACA
TCGCACGTAGTAAACATCAAAAAAAGAAGCTGACTCTGCACGATCTTGCA
TTTTGGACTCTTCTGCTCTTGGTGCTTTTGAAGGAAGGAacactttttat
ttaaagtttttcCAAACCTAAACCGATAGCCActgataagaaaaatttta
agaagCTGATACACTAAACATCACAAGAGAAAATGGCCAAAACATACAAA
CTTGAAGAAGTTGCAAAACATAATGATGGGCGGTCAACTTGGATGGTCAT
TCACAACAAAGTTTACGATGTAACTAAATTCCTTGAAGAGcATCCAGGAG
GAGAAGAAGTTTTGTTAGAGTTAGCAGGTCAGGATGGCACTGAACAATTT
GAAGATGTGGGTCATTCTACCGATGCTAGAAGTTTGTTAGATGATCATTA
CATTGGTGATTTGCATGAGgaTGATGTTGTAAAAGAAGCTACACCTAAAA
AGACTCAGgTCACAACATCAGACAGCGAGGGAAGTACTTCATCGAATTGG
TTGCTAATGGTTTCCGTAATGGTAGTAGGGGTTGCTATTGGATGTTTCCT
CTACATGCAATCTACAAAAAGCTGATCTTTCATAACAGACGTTTTTGGAT
CGGTTAGATACGTAGAAAAGTATTAGAATGGTGTGTAAATTATGGAATTG
ATATGGTGACAATAATTCCAGGTGCCTTTAAAAAGCACGAGACGAATGGT
AAAATgacattttctaattttgaagtTATAAGCAcAAAAATCTATCTTCG
ACTTAATCTTTGCATAAGTCCTCATTTCTTTGAACCATCCATATTTTATT
TTAGTGTTAGGCCTTAATAATAaactttcattatttttatttagacggta
attttttattatttttgttattgttataatttaaaatgctaGGCAATTGT
AGCTGGATATAGTAAAAATTAGaatcaattcatttttaaaatataatgtC
AAATTATTTAATGATGgaattaaatttgatattttaaaattttatcctGA
ACAATTCAAAATAAACGTTTCAGTAAAGCTATGTTATATGGAAATCAAAG
tgtaattttttataaatatatttcCAGCGGCATCATAAAAGTAAGATAAC
AGGGTACAGTTCTACATATCGGACATTTTTGGTTAAATATTTATCTTCTC
GAAATAAACTATTTTACAAATTACTATAAGAAATGAAATAGCATATTAAA
AATACTACATACATAGAAGGAAAAACATAACGACTAAGTCGGTCTAAAGG
GTGTCCAGATTTCGCGTCTTTCTGTACATCATTTTGTCCAGATTTGTAAT
CAGTTTCTTTTGTATTAAGAAGAGTCGAACCATTTTCTTCTGTGTCATTC
AATTCGATATTTTGAATGTTGCGTCTCGAGCTTTTAAAAATCTGAAGGAT
AAATTCATTTTCGTTTTTAAGAAAACTTGTCCGAAGGCCCCAGAAATAAC
ACATTTCggaagttcttaaaaaaaacctaCAAGTACCTTAAATGAGCACT
GGTCTAAGGGATCGAAATGAGCTAAAGAAAAACGCGACAGGGCGCAAAAT
TTTTTCAGCTTTCAGGATACGTTCTTATGAATAcattttaaaggaagaaa
tttttttgccaaattttgacCTAGATTAGGCTCTAGAATTGGGTtttcaa
cataaaaattaaatttggcggttgTAGGAAATTTAGGGTCAATAATGATC
CCTAAATATCCTACAACCGCCC
Run BLAST on NCBI

protein sequence of TCONS_00025942-protein

>TCONS_00025942-protein ID=TCONS_00025942-protein|Name=TCONS_00025942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MAKTYKLEEVAKHNDGRSTWMVIHNKVYDVTKFLEEHPGGEEVLLELAGQ
DGTEQFEDVGHSTDARSLLDDHYIGDLHEDDVVKEATPKKTQVTTSDSEG
STSSNWLLMVSVMVVGVAIGCFLYMQSTKS
Run BLAST on NCBI

transcript from alignment at sc0000555:162694..167139-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025942 ID=TCONS_00025942|Name=TCONS_00025942|organism=Clytia hemisphaerica|type=transcript|length=4446bp|location=Sequence derived from alignment at sc0000555:162694..167139- (Clytia hemisphaerica)
CCTTGCACTGCTGTGATTCAAGACCATCTTCAAGATTTTGTTTATGTTCT
TTCCTAGAATTTTGTTGTGAAAAATTGTCCACCATGTTTGCCTTTGAAGC
TCAGAGCTTCATTAATTCGAAAGTATTTCTTTGTGCAGATCCATCGATGA
GAAGATGTGTCCAAATAATATAAATAACAATGTTTGAGACTCTGAAAAAC
GTTATGAAAGTTCTGTTGCACGCTCGCGATACGACGCCATCTTGGTTTTG
GAAGAAATGGAACTTCTCGGAAAAGTCAATTTCAAAGAGGGGAGCTTTGT
AAACAACTTTGTAAAGTGATATCTAATGTATAATCTCTCAATTGAAGCAA
ATGATTTTCTCTTAGATCAAAATGAGCGCAAATTTTGCATATAATAAAGA
TTTTGGGAAAATAGTCAGGAGCAGTTGTAATTATGCTTCATGAAATTAAG
TATATTTACCCCCTGAAATTTGAGTATGTTACATTCTCCGTGCTGTGTGG
CTTCCCCTCCCAAAGACCACGGAGACCAACAAACCTCAAGGTTCCGAACA
TCGCACGTAGTAAACATCAAAAAAAGAAGCTGACTCTGCACGATCTTGCA
TTTTGGACTCTTCTGCTCTTGGTGCTTTTGAAGGAAGGAACACTTTTTAT
TTAAAGTTTTTCCAAACCTAAACCGATAGCCACTGATAAGAAAAATTTTA
AGAAGCTGATACACTAAACATCACAAGAGAAAATGGCCAAAACATACAAA
CTTGAAGAAGTTGCAAAACATAATGATGGGCGGTCAACTTGGATGGTCAT
TCACAACAAAGTTTACGATGTAACTAAATTCCTTGAAGAGGTATATTTCC
ATCTTAATTTTACTCCTTATAATGGCTTAACAATAATTGAAACCTTCAAC
TATAGTGTAAAACTTGTGTTTAATGGGAGATTCGCCGTCATTCTGGGTAA
AGCAAATCCCATGACTATTCATATTGGGCCATTATTCCAGAATTTGTCTG
TAGCAGGGGGCGGACGACACAGCACAGGATTTCCGAGGGCAAAAGTTTTC
ACCAAAATTCGAAATTTCTAAGGGGAGAGAAGAAAATGTATGAATTTCCA
AGGCAATTGAATTAAAAAAGGCAAAAAGAGTGGAATTTCCAATGCATTTT
GCAAAAGTTCATCGATTTTCATCGGATTTTCCGACCACCACTGGAAAAGA
AAAATAATTTTTGAGGCGTAACTAAAATAAGTTTTTTTTTCTTCTAGCAT
CCAGGAGGAGAAGAAGTTTTGTTAGAGTTAGCAGGTAGGTCAAAGATAAA
GCTCAGTATCACTCAAATAAAATTATTTATTTGATAACATTAAAAAACAA
AAAAAAGCTGAAAGAGCAGAAATTTTACCTTTGTGAAAATAAATACAAAC
AAATTCTTCGAAATCAGATTCAGCGTAAAATTTATTGTAAGCTTGCCATT
TTTGGCAAAAAGTTTTTGAATATATTTTTTTAATGCTTTCATACTATATA
GGTCAGGATGGCACTGAACAATTTGAAGATGTGGGTCATTCTACCGATGC
TAGAAGTTTGTTAGATGATCATTACATTGGTGATTTGCATGAGGTGGGAA
TGTCTTGGATATTAAAAAAAAGGTCTATTCGTTTCAGAGCCACTTTTAAA
ACTAATTTTAGGTTTTTCACCAATAGGATTCAAGTTTATGGTATATATGA
TATCCTTACAACTTTTTATTTTTATAGGATGATGTTGTAAAAGAAGCTAC
ACCTAAAAAGACTCAGGTGAAAATCTTTATTCTGAAAATACTTTACAGTG
AAAAGCTCAAAACAACTTTAAGATTCTGCTGTAGAGATCTCTTCAGATTT
AACTTTTTATGGGATAAAATTTCAGATTTTGCTGAATGGAAATTAAGAAA
GTCCCTATCCACAAAATATTATCAAACAAAACTTAAAAAAACGTCATAGT
AAGGCAAAAATAAAAAAATGTAGTGTTTCCGGAAACCGGCCAGGTGAAAA
ATATAAATTTTCTGACCCGGCCGCAGACTATGGGTTCATCATAAAGAAAA
TCGAGTTGACCGTTCAAGCTATCAAACATTGTTTAGCTAGATATTCCCGC
TTGTAAATCAAGTTCCTTAGTAGTTGATACATTAGTATTCAGGGCTTACT
TCTTACTGTTTGTACATAAAAGTTATCTTTAAAGTTCTATTTCAATGATC
TTAAGTGATTAAAAATAGCAACAAAAAGTTTTTTTCCGGCTGGTCGCATG
AGAGCTTTTTTTCCTTCACCTGCATCCTGGGAACACTACATTTTTCTATT
TTCGCCTAACTATACACTTTTTAAATGTTTGGCATCAAAGAAACGCTAAT
AATGCGTATGTATTTCAACAACTAACATGCAAGGTTTGGCTGGGCAGTAA
AAGGCACAGGATTGTGAAAATATTGTCTCCCAACAGTGAAATTTGCAAAA
TTAAGTCTCCGTGAAAGATTATCCCATTAAAATACCATGGTAGTTAAATA
AATAAAGCAGTATTCGTGAAATTTTTTGAGATTAAGAATCCGCTGATTTC
TTCATTTTTTTAGGTCACAACATCAGACAGCGAGGGAAGGTATCCAACAT
TTAGTTTTAATTTCTAACCACAATTAAGAGCTTACAATTTTACACAATTC
ACAATAATGATAATTATTTTGATGCCCTGTATACAGTGTGTCCCAAAAAA
GCGGACAAATTTTTATGTAAATTAAAATCCTCATGGTTTATGTGTAATTT
TATGACTTGTATACTTGATATTTCATCTTGGGACTTGATATTCATTGACA
AGAGAATTTTAATCTTATTTCAATTATTTTAAGCTAGATAATGAGTTTTT
TACTTAATATAAAAATATTTCTACTTTTTTGGGGCACGCTGTATTCGAGA
GAAATTTGAATAAAATCTACTAATCAATGTAACAAATTGAAAGTTCGAAC
AAGTTAAAAAGATATATTTCTCCTTTTTTAACAGTGGATGTACCTTATCG
TGAAAACACATGCTTCTGTATTCACCCCTTGTTTTATTGTATTCGCCAAA
CGTTCAGAAATTTATTGACATATGCACTAAAAACAGTCAACCAAGTTAAA
AAAACTGTCCAGTGAATCCAAAAATCATCCGTTTCATTTTCAGTACTTCA
TCGAATTGGTTGCTAATGGTTTCCGTAATGGTAGTAGGGGTTGCTATTGG
ATGTTTCCTCTACATGCAATCTACAAAAAGCTGATCTTTCATAACAGACG
TTTTTGGATCGGTTAGATACGTAGAAAAGTATTAGAATGGTGTGTAAATT
ATGGAATTGATATGGTGACAATAATTCCAGGTGCCTTTAAAAAGCACGAG
ACGAATGGTAAAATGACATTTTCTAATTTTGAAGTTATAAGCACATAAAA
TTTTCTCTTTTACTAATTATTGTAATATAAACTTAGGAAATCTTTCCTTC
TTCTAGCACAAAAATCTATCTTCGACTTAATCTTTGCATAAGTCCTCATT
TCTTTGAACCATCCATATTTTATTTTAGTGTTAGGCCTTAATAATAAACT
TTCATTATTTTTATTTAGACGGTAATTTTTTATTATTTTTGTTATTGTTA
TAATTTAAAATGCTAGGCAATTGTAGCTGGATATAGTAAAAATTAGAATC
AATTCATTTTTAAAATATAATGTCAAATTATTTAATGATGGAATTAAATT
TGATATTTTAAAATTTTATCCTGAACAATTCAAAATAAACGTTTCAGTAA
AGCTATGTTATATGGAAATCAAAGTGTAATTTTTTATAAATATATTTCCA
GCGGCATCATAAAAGTAAGATAACAGGGTACAGTTCTACATATCGGACAT
TTTTGGTTAAATATTTATCTTCTCGAAATAAACTATTTTACAAATTACTA
TAAGAAATGAAATAGCATATTAAAAATACTACATACATAGAAGGAAAAAC
ATAACGACTAAGTCGGTCTAAAGGGTGTCCAGATTTCGCGTCTTTCTGTA
CATCATTTTGTCCAGATTTGTAATCAGTTTCTTTTGTATTAAGAAGAGTC
GAACCATTTTCTTCTGTGTCATTCAATTCGATATTTTGAATGTTGCGTCT
CGAGCTTTTAAAAATCTGAAGGATAAATTCATTTTCGTTTTTAAGAAAAC
TTGTCCGAAGGCCCCAGAAATAACACATTTCGGAAGTTCTTAAAAAAAAC
CTACAAGTACCTTAAATGAGCACTGGTCTAAGGGATCGAAATGAGCTAAA
GAAAAACGCGACAGGGCGCAAAATTTTTTCAGCTTTCAGGATACGTTCTT
ATGAATACATTTTAAAGGAAGAAATTTTTTTGCCAAATTTTGACCTAGAT
TAGGCTCTAGAATTGGGTTTTCAACATAAAAATTAAATTTGGCGGTTGTA
GGAAATTTAGGGTCAATAATGATCCCTAAATATCCTACAACCGCCC

Coding sequence (CDS) from alignment at sc0000555:162694..167139-

>TCONS_00025942 ID=TCONS_00025942|Name=TCONS_00025942|organism=Clytia hemisphaerica|type=CDS|length=2358bp|location=Sequence derived from alignment at sc0000555:162694..167139- (Clytia hemisphaerica)
TACTTCATCGAATTGGTTGCTAATGGTTTCCGTAATGGTAGTAGGGGTTG
CTATTGGATGTTTCCTCTACATGCAATCTACAAAAAGCTGAGTCACAACA
TCAGACAGCGAGGGAAGGATGATGTTGTAAAAGAAGCTACACCTAAAAAG
ACTCAGGTCAGGATGGCACTGAACAATTTGAAGATGTGGGTCATTCTACC
GATGCTAGAAGTTTGTTAGATGATCATTACATTGGTGATTTGCATGAGCA
TCCAGGAGGAGAAGAAGTTTTGTTAGAGTTAGCAGATGGCCAAAACATAC
AAACTTGAAGAAGTTGCAAAACATAATGATGGGCGGTCAACTTGGATGGT
CATTCACAACAAAGTTTACGATGTAACTAAATTCCTTGAAGAGTACTTCA
TCGAATTGGTTGCTAATGGTTTCCGTAATGGTAGTAGGGGTTGCTATTGG
ATGTTTCCTCTACATGCAATCTACAAAAAGCTGAGTCACAACATCAGACA
GCGAGGGAAGGATGATGTTGTAAAAGAAGCTACACCTAAAAAGACTCAGG
TCAGGATGGCACTGAACAATTTGAAGATGTGGGTCATTCTACCGATGCTA
GAAGTTTGTTAGATGATCATTACATTGGTGATTTGCATGAGCATCCAGGA
GGAGAAGAAGTTTTGTTAGAGTTAGCAGATGGCCAAAACATACAAACTTG
AAGAAGTTGCAAAACATAATGATGGGCGGTCAACTTGGATGGTCATTCAC
AACAAAGTTTACGATGTAACTAAATTCCTTGAAGAGTACTTCATCGAATT
GGTTGCTAATGGTTTCCGTAATGGTAGTAGGGGTTGCTATTGGATGTTTC
CTCTACATGCAATCTACAAAAAGCTGAGTCACAACATCAGACAGCGAGGG
AAGGATGATGTTGTAAAAGAAGCTACACCTAAAAAGACTCAGGTCAGGAT
GGCACTGAACAATTTGAAGATGTGGGTCATTCTACCGATGCTAGAAGTTT
GTTAGATGATCATTACATTGGTGATTTGCATGAGCATCCAGGAGGAGAAG
AAGTTTTGTTAGAGTTAGCAGATGGCCAAAACATACAAACTTGAAGAAGT
TGCAAAACATAATGATGGGCGGTCAACTTGGATGGTCATTCACAACAAAG
TTTACGATGTAACTAAATTCCTTGAAGAGTACTTCATCGAATTGGTTGCT
AATGGTTTCCGTAATGGTAGTAGGGGTTGCTATTGGATGTTTCCTCTACA
TGCAATCTACAAAAAGCTGAGTCACAACATCAGACAGCGAGGGAAGGATG
ATGTTGTAAAAGAAGCTACACCTAAAAAGACTCAGGTCAGGATGGCACTG
AACAATTTGAAGATGTGGGTCATTCTACCGATGCTAGAAGTTTGTTAGAT
GATCATTACATTGGTGATTTGCATGAGCATCCAGGAGGAGAAGAAGTTTT
GTTAGAGTTAGCAGATGGCCAAAACATACAAACTTGAAGAAGTTGCAAAA
CATAATGATGGGCGGTCAACTTGGATGGTCATTCACAACAAAGTTTACGA
TGTAACTAAATTCCTTGAAGAGTACTTCATCGAATTGGTTGCTAATGGTT
TCCGTAATGGTAGTAGGGGTTGCTATTGGATGTTTCCTCTACATGCAATC
TACAAAAAGCTGAGTCACAACATCAGACAGCGAGGGAAGGATGATGTTGT
AAAAGAAGCTACACCTAAAAAGACTCAGGTCAGGATGGCACTGAACAATT
TGAAGATGTGGGTCATTCTACCGATGCTAGAAGTTTGTTAGATGATCATT
ACATTGGTGATTTGCATGAGCATCCAGGAGGAGAAGAAGTTTTGTTAGAG
TTAGCAGATGGCCAAAACATACAAACTTGAAGAAGTTGCAAAACATAATG
ATGGGCGGTCAACTTGGATGGTCATTCACAACAAAGTTTACGATGTAACT
AAATTCCTTGAAGAGTACTTCATCGAATTGGTTGCTAATGGTTTCCGTAA
TGGTAGTAGGGGTTGCTATTGGATGTTTCCTCTACATGCAATCTACAAAA
AGCTGAGTCACAACATCAGACAGCGAGGGAAGGATGATGTTGTAAAAGAA
GCTACACCTAAAAAGACTCAGGTCAGGATGGCACTGAACAATTTGAAGAT
GTGGGTCATTCTACCGATGCTAGAAGTTTGTTAGATGATCATTACATTGG
TGATTTGCATGAGCATCCAGGAGGAGAAGAAGTTTTGTTAGAGTTAGCAG
ATGGCCAAAACATACAAACTTGAAGAAGTTGCAAAACATAATGATGGGCG
GTCAACTTGGATGGTCATTCACAACAAAGTTTACGATGTAACTAAATTCC
TTGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014589XLOC_014589Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025942-proteinTCONS_00025942-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025942-exon-sc0000555-1575043694:166300..167139TCONS_00025942-exon-sc0000555-1575043694:166300..167139Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1575043694:165856..165892TCONS_00025942-exon-sc0000555-1575043694:165856..165892Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1575043694:165547..165638TCONS_00025942-exon-sc0000555-1575043694:165547..165638Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1575043694:165374..165412TCONS_00025942-exon-sc0000555-1575043694:165374..165412Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1575043694:164551..164576TCONS_00025942-exon-sc0000555-1575043694:164551..164576Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1575043694:163746..163996TCONS_00025942-exon-sc0000555-1575043694:163746..163996Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1575043694:162694..163680TCONS_00025942-exon-sc0000555-1575043694:162694..163680Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1510915933:166300..167139TCONS_00025942-exon-sc0000555-1510915933:166300..167139Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1510915933:165856..165892TCONS_00025942-exon-sc0000555-1510915933:165856..165892Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1510915933:165547..165638TCONS_00025942-exon-sc0000555-1510915933:165547..165638Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1510915933:165374..165412TCONS_00025942-exon-sc0000555-1510915933:165374..165412Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1510915933:164551..164576TCONS_00025942-exon-sc0000555-1510915933:164551..164576Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1510915933:163746..163996TCONS_00025942-exon-sc0000555-1510915933:163746..163996Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1510915933:162694..163680TCONS_00025942-exon-sc0000555-1510915933:162694..163680Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1491911889:166300..167139TCONS_00025942-exon-sc0000555-1491911889:166300..167139Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1491911889:165856..165892TCONS_00025942-exon-sc0000555-1491911889:165856..165892Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1491911889:165547..165638TCONS_00025942-exon-sc0000555-1491911889:165547..165638Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1491911889:165374..165412TCONS_00025942-exon-sc0000555-1491911889:165374..165412Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1491911889:164551..164576TCONS_00025942-exon-sc0000555-1491911889:164551..164576Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1491911889:163746..163996TCONS_00025942-exon-sc0000555-1491911889:163746..163996Clytia hemisphaericaexon
TCONS_00025942-exon-sc0000555-1491911889:162694..163680TCONS_00025942-exon-sc0000555-1491911889:162694..163680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:162694..167139 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.6437	25.2592	46.6922	57.5416	16.6944	12.4107	15.407	18.7565	22.2075	21.5819	27.9868	15.9372	16.6148	15.2083	13.4176	15.0276	17.4198	19.0866	11.7327	13.5127	20.9054	20.3472	21.7615	20.2441	12.204	13.1004	25.3672	20.9034	25.5712	20.4357
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001199Cyt_B5-like_heme/steroid-bd
IPR018506Cyt_B5_heme-BS
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0020037 heme binding
Blast
[Close]
BLAST of TCONS_00025942 vs. Swiss-Prot (Human)
Match: CYB5 (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 7.207e-38
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:  739 KTYKLEEVAKHNDGRSTWMVIHNKVYDVTKFLEEHPGGEEVLLELAGQDGTEQFEDVGHSTDARSLLDDHYIGDLHEDDVVKEATPKKTQVTTSDSEGSTSSNWLLMVSVMVVGVAIGCFLYM 1107
            K Y LEE+ KHN  +STW+++H+KVYD+TKFLEEHPGGEEVL E AG D TE FEDVGHSTDAR +     IG+LH DD  K   P +T +TT DS  S  +NW++  ++  V VA+   LYM
Sbjct:   10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETLITTIDSSSSWWTNWVI-PAISAVAVALMYRLYM 131
The following BLAST results are available for this feature:
BLAST of TCONS_00025942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CYB57.207e-3856.10Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
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