TCONS_00025917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025917
Unique NameTCONS_00025917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025917 ID=TCONS_00025917|Name=TCONS_00025917|organism=Clytia hemisphaerica|type=transcript|length=791bp
gttttggccatttcgtgcgaacAAATTTGTCTGCTAATCAGAGGGTcggc
taattgagtgtccgccttttagaaacttttttatgaggatttgactagga
aacagcCGGGGAAATGAAATTgcccgctaatcagaggtgtccgccattaa
gagtgtccgttaattagaggttttactgtattgattgatttaatctTTTA
GTTTTTAAATATCGATGACGAATTTGTTTCAATGATGGACGACGGCGGTG
AAACGAAAGAAGACTTGAAATTACCCAATGATGATATCGGTAAGGAAATC
CGGGAAAAAGAAGCTAACGGAGAGTCATTCATCGTCACCGTATTGAGTGC
TTGTGGCGAGGAGAAAATCGTGGGAACCAAAGTGATGAACTAAAGTATTC
CGGCCGCCGAGAGTTCTTCGCTGGTTTTATTTATCCAAACTCAGAAAACG
ACAACCATCAATTTTATAAATATGAAAATACAAATAATTTTCGTAAATAC
ACACATACACAGTGATTTTTCTTGATCCCTTACTGATGTATTGTGCCCGT
TTTCTTAGAATTCTTGCCTTTTTGGTTTCTAAGTTTTCTCCGCATGATTA
TATTCTACTGTCATTAAAATTAAGAGGTTTACTTTTGGCCGCTGTTGTAG
TCTGGGCTTTATCCTAATGCCAGAGACTTTTTAAATGGTTGAGATTGGCT
CAAATTCAAACCACTGTTCATAGACTGTCTGCATCTACTCTTACGTTTTG
ACATagtggtttcaattttcttaagttAAAAAATCCGATGA
Run BLAST on NCBI

transcript from alignment at sc0000550:224997..225787

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025917 ID=TCONS_00025917|Name=TCONS_00025917|organism=Clytia hemisphaerica|type=transcript|length=791bp|location=Sequence derived from alignment at sc0000550:224997..225787 (Clytia hemisphaerica)
TCATCGGATTTTTTaacttaagaaaattgaaaccactATGTCAAAACGTA
AGAGTAGATGCAGACAGTCTATGAACAGTGGTTTGAATTTGAGCCAATCT
CAACCATTTAAAAAGTCTCTGGCATTAGGATAAAGCCCAGACTACAACAG
CGGCCAAAAGTAAACCTCTTAATTTTAATGACAGTAGAATATAATCATGC
GGAGAAAACTTAGAAACCAAAAAGGCAAGAATTCTAAGAAAACGGGCACA
ATACATCAGTAAGGGATCAAGAAAAATCACTGTGTATGTGTGTATTTACG
AAAATTATTTGTATTTTCATATTTATAAAATTGATGGTTGTCGTTTTCTG
AGTTTGGATAAATAAAACCAGCGAAGAACTCTCGGCGGCCGGAATACTTT
AGTTCATCACTTTGGTTCCCACGATTTTCTCCTCGCCACAAGCACTCAAT
ACGGTGACGATGAATGACTCTCCGTTAGCTTCTTTTTCCCGGATTTCCTT
ACCGATATCATCATTGGGTAATTTCAAGTCTTCTTTCGTTTCACCGCCGT
CGTCCATCATTGAAACAAATTCGTCATCGATATTTAAAAACTAAAagatt
aaatcaatcaatacagtaaaacctctaattaacggacactcttaatggcg
gacacctctgattagcgggcAATTTCATTTCCCCGgctgtttcctagtca
aatcctcataaaaaagtttctaaaaggcggacactcaattagccgACCCT
CTGATTAGCAGACAAATTTgttcgcacgaaatggccaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014575XLOC_014575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025917-exon-sc0000550-1491911889:224997..225787TCONS_00025917-exon-sc0000550-1491911889:224997..225787Clytia hemisphaericaexon
TCONS_00025917-exon-sc0000550-1510915933:224997..225787TCONS_00025917-exon-sc0000550-1510915933:224997..225787Clytia hemisphaericaexon
TCONS_00025917-exon-sc0000550-1575043694:224997..225787TCONS_00025917-exon-sc0000550-1575043694:224997..225787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:224997..225787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
885.342	922.009	1115.59	1379.34	1050.62	830.325	960.086	1028.28	694.328	607.977	735.893	802.942	839.562	970.82	854.095	792.428	774.206	770.605	616.088	590.89	1033.71	1001.55	979.659	903.912	1029.69	1074.61	1125.55	1108.89	694.454	697.686
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top