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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025881 ID=TCONS_00025881|Name=TCONS_00025881|organism=Clytia hemisphaerica|type=transcript|length=2078bp
ataaattTTACCAAATACTAATCATAGCACTATAGGGGAGTGAATCACTC
CAATCAgcataaatatttcaaaaaacataTAACTATTTTCTGTCTAGTGC
TCGATTGCACAGACCATCAATTGACAATCCACTTCATTCAACAGCTTGGT
CTAATAAATTCTTACAAGGCCTTCCACGTTTTGTATAATTGTCACAGTTG
AAGGCAAGCATTTTTACTGATCGGTCAAGGGGCATTCTAATTACATGTTT
CATATAATTCTGTTGTTGTTTTCGAATAAAACAAGACACATCAACACTTC
CACAGAGATTGTGGAGTTGTTCATTACTAATACGATAACGGTAGTCATTC
TCACTTTCATTGACGAAACGAAAACCTCCTCGAACGATACGTCTGAGGAA
ACCACGGTAGGTTACATCAAGGCGCTCCATTTGGGCTTTGTTGACATTCC
AGTTTTGGCAAGCGTAGGTCAGCGTACTACGAACAAAACTTTCCAGAAAT
TTGACTCTTGTTCTTAAATTGATTCTCATGTTCTGAAGAAGATTGCTCAT
GTCAGTGAATTTACTGACTGCCAATTGAATCCGGTTATTTATTTCAGGAT
ATCGAAATTCTCAACATTTTTAAGACTGTTGTTTCTTAAGCTGAGAATTG
ACTGTGGGTATTGGTTCTGCAAGTGGTTAAGAACCATGGATTCAGTTTTT
AGAACATTGATTTTGAGTCCGAAATTTGTGAAAGTGATGTctaaaatttc
tattgttttttgaAGGTCAGGACTGGTAAGGAGGAATAAGATTAGATCAT
CTGCGTATCCATTCCATGGGATCGTCTTAGTACCGTACATTGTAACGTTA
TTTCTTCTCATTTCTAGACGTTCATTCCGGCTGATAGCTCTAGGGTTTAT
TCGGTAAGAATGTTCATAGAAtccaacattttcatttttgtatttatcGA
CGAAGATGCGCATTACGTAATCAATGTATAGATTAAAGAGAAGGGGGCTT
TCGGGGCCACCCTGCCTCACACCAGAGGTGGTAGCAAAGGTACTGTTGTC
TTCAGGGAAGGTTAGCGAAGTATTTTAATAAAGTTTTTCGAGTACTTGAA
TGACTGTAGGACATTCGCTGTCGGGGAATCGTAATTTGATAGACTGGAAT
AGCCAGGATCTGGGGATGTGATCATATGCAGCTGTAAGGTCTACAAATAG
TAGGTAGAGTGGCTGTTGTTTTCTCTCAGTGATCTGTTGAAATCTTTTCA
GTAAGAATATTCCATCGGTGGTTCCTCGGTTTTGTCTGAAACCGTTTTGT
TGGTCGGTAAGTTGGGTATTGTACCAGGGCTGAAGACGCTCGAGGATAAT
GTTAACGAGTAGTTTGCAAAGTGTTGAGCCGATGCTTAAACCACGGTATT
TGGATGGGTCGCTTTTGGATCCTTTCTTCTTCCACAACTTTTTAAGGCGT
GAATTACCCCACGATCCTGGGATATCCAATTCATTCCAAACGTTAAGGGA
TATTTTGTGCAGTATGCGGTGCAAAGCTGGTTCGTTGTAAAATTTGAGAA
GCTCTGCATCAATGTCATTATtggctttgttgttttttaaaagtttgatg
TGTTTTTCGATTTCTTCCATTGAAGGTGGGTTGTCATCGATGGGACACAT
CCTCGATTTTTCCCTTAACTCGTGGATGAAGGTGGGTAGGTCAGTTCTTA
GTTCGGCGGCTTCATGTATCTCTGAAGGATGCTCTGGGTTGAAGTGAtat
ttaaaatgttctaaaagtTTTTGAGGTTGACAGCTGCTGGGAATGGGCTT
TAGTGTTGTGTTCTGATTCTTAGCACGGTGGAAAAGTTTTTCTAGTTTTC
TGTTGACCGCGAATTGATTTATTTGTTCAGCCTCTTGTTCAAGGTATTTA
GGGACCTTAAGCAACTAGGACGGCGATTTGAGGGAGCACGtggagaaaat
attaaaatctaatggtaaattttattcgATTTTACTATGGTTTAATAGCA
CGTGAATGGACTTTAACAAAAGCAAACTTTggtgaaaaataatcttttat
cTCCCGAGTGATTTAAATGATTAATTAT Run BLAST on NCBI transcript from alignment at sc0000550:35109..37265- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025881 ID=TCONS_00025881|Name=TCONS_00025881|organism=Clytia hemisphaerica|type=transcript|length=2157bp|location=Sequence derived from alignment at sc0000550:35109..37265- (Clytia hemisphaerica)
ATAAATTTTACCAAATACTAATCATAGCACTATAGGGGAGTGAATCACTC
CAATCAGCATAAATATTTCAAAAAACATATAACTATTTTCTGTCTAGTGC
TCGATTGCACAGACCATCAATTGACAATCCACTTCATTCAACAGCTTGGT
CTAATAAATTCTTACAAGGCCTTCCACGTTTTGTATAATTGTCACAGTTG
AAGGCAAGCATTTTTACTGATCGGTCAAGGGGCATTCTAATTACATGTTT
CATATAATTCTGTTGTTGTTTTCGAATAAAACAAGACACATCAACACTTC
CACAGAGATTGTGGAGTTGTTCATTACTAATACGATAACGGTAGTCATTC
TCACTTTCATTGACGAAACGAAAACCTCCTCGAACGATACGTCTGAGGAA
ACCACGGTAGGTTACATCAAGGCGCTCCATTTGGGCTTTGTTGACATTCC
AGTTTTGGCAAGCGTAGGTCAGCGTACTACGAACAAAACTTTCCAGAAAT
TTGACTCTTGTTCTTAAATTGATTCTCATGTTCTGAAGAAGATTGCTCAT
GTCAGTGAATTTACTGACTGCCAATTGAATCCGGTTATTTATTTCAGGAT
ATCGAAATTCTCAACATTTTTAAGACTGTTGTTTCTTAAGCTGAGAATTG
ACTGTGGGTATTGGTTCTGCAAGTGGTTAAGAACCATGGATTCAGTTTTT
AGAACATTGATTTTGAGTCCGAAATTTGTGAAAGTGATGTCTAAAATTTC
TATTGTTTTTTGAAGGTCAGGACTGGTAAGGAGGAATAAGATTAGATCAT
CTGCGTATCCATTCCATGGGATCGTCTTAGTACCGTACATTGTAACGTTA
TTTCTTCTCATTTCTAGACGTTCATTCCGGCTGATAGCTCTAGGGTTTAT
TCGGTAAGAATGTTCATAGAATCCAACATTTTCATTTTTGTATTTATCGA
CGAAGATGCGCATTACGTAATCAATGTATAGATTAAAGAGAAGGGGGCTT
TCGGGGCCACCCTGCCTCACACCAGAGGTGGTAGCAAAGGTACTGTTGGC
TTCAGGGAAGGTTAGCGAAGTATTTTCATAGAGTTTTTCGAGTACTTGAA
TGACTGTAGGNAGCAAAGGTACTGTTGTCTTCAGGGAAGGTTAGCGAAGT
ATTTTAATAAAGTTTTTCGAGTACTTGAATGACTGTAGGACATTCGCTGT
CGGGGAATCGTAATTTGATAGACTGGAATAGCCAGGATCTGGGGATGTGA
TCATATGCAGCTGTAAGGTCTACAAATAGTAGGTAGAGTGGCTGTTGTTT
TCTCTCAGTGATCTGTTGAAATCTTTTCAGTAAGAATATTCCATCGGTGG
TTCCTCGGTTTTGTCTGAAACCGTTTTGTTGGTCGGTAAGTTGGGTATTG
TACCAGGGCTGAAGACGCTCGAGGATAATGTTAACGAGTAGTTTGCAAAG
TGTTGAGCCGATGCTTAAACCACGGTATTTGGATGGGTCGCTTTTGGATC
CTTTCTTCTTCCACAACTTTTTAAGGCGTGAATTACCCCACGATCCTGGG
ATATCCAATTCATTCCAAACGTTAAGGGATATTTTGTGCAGTATGCGGTG
CAAAGCTGGTTCGTTGTAAAATTTGAGAAGCTCTGCATCAATGTCATTAT
TGGCTTTGTTGTTTTTTAAAAGTTTGATGTGTTTTTCGATTTCTTCCATT
GAAGGTGGGTTGTCATCGATGGGACACATCCTCGATTTTTCCCTTAACTC
GTGGATGAAGGTGGGTAGGTCAGTTCTTAGTTCGGCGGCTTCATGTATCT
CTGAAGGATGCTCTGGGTTGAAGTGATATTTAAAATGTTCTAAAAGTTTT
TGAGGTTGACAGCTGCTGGGAATGGGCTTTAGTGTTGTGTTCTGATTCTT
AGCACGGTGGAAAAGTTTTTCTAGTTTTCTGTTGACCGCGAATTGATTTA
TTTGTTCAGCCTCTTGTTCAAGGTATTTAGGGACCTTAAGCAACTAGGAC
GGCGATTTGAGGGAGCACGTGGAGAAAATATTAAAATCTAATGGTAAATT
TTATTCGATTTTACTATGGTTTAATAGCACGTGAATGGACTTTAACAAAA
GCAAACTTTGGTGAAAAATAATCTTTTATCTCCCGAGTGATTTAAATGAT
TAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025881-exon-sc0000550-1575043694:36227..37265 | TCONS_00025881-exon-sc0000550-1575043694:36227..37265 | Clytia hemisphaerica | exon |
| TCONS_00025881-exon-sc0000550-1575043694:35109..36147 | TCONS_00025881-exon-sc0000550-1575043694:35109..36147 | Clytia hemisphaerica | exon |
| TCONS_00025881-exon-sc0000550-1510915933:36227..37265 | TCONS_00025881-exon-sc0000550-1510915933:36227..37265 | Clytia hemisphaerica | exon |
| TCONS_00025881-exon-sc0000550-1510915933:35109..36147 | TCONS_00025881-exon-sc0000550-1510915933:35109..36147 | Clytia hemisphaerica | exon |
| TCONS_00025881-exon-sc0000550-1491911889:36227..37265 | TCONS_00025881-exon-sc0000550-1491911889:36227..37265 | Clytia hemisphaerica | exon |
| TCONS_00025881-exon-sc0000550-1491911889:35109..36147 | TCONS_00025881-exon-sc0000550-1491911889:35109..36147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:35109..37265 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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