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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025843 ID=TCONS_00025843|Name=TCONS_00025843|organism=Clytia hemisphaerica|type=transcript|length=1958bpRun BLAST on NCBI protein sequence of TCONS_00025843-protein >TCONS_00025843-protein ID=TCONS_00025843-protein|Name=TCONS_00025843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp MGFMWLFVLALPSIVTAQNCADKSAYCSQWASAGYCFPTNQWFTYMSANCRun BLAST on NCBI transcript from alignment at sc0000549:146984..163631- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025843 ID=TCONS_00025843|Name=TCONS_00025843|organism=Clytia hemisphaerica|type=transcript|length=16648bp|location=Sequence derived from alignment at sc0000549:146984..163631- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000549:146984..163631- >TCONS_00025843 ID=TCONS_00025843|Name=TCONS_00025843|organism=Clytia hemisphaerica|type=CDS|length=10422bp|location=Sequence derived from alignment at sc0000549:146984..163631- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025843 vs. Swiss-Prot (Human)
Match: TMPS6 (Transmembrane protease serine 6 OS=Homo sapiens GN=TMPRSS6 PE=1 SV=3) HSP 1 Score: 200.675 bits (509), Expect = 1.232e-54 Identity = 112/259 (43.24%), Postives = 145/259 (55.98%), Query Frame = 2
Query: 833 NCGHKGPSHTRIVGGTKARPGDWPWQVNIDYLYNTANPGAH-CGGTLLNDEWVLSAAHCFEADQVAGRYWMRLAEHDIHSSNGW--EQRFNVTELIMHPKYDANKNHDYDFALLKLDRKASFNDRIRPACIPGPKTSFPVGTECWISGWGLLKEHDLTGP--KILQQAKVPLIDQSTCEQAFSHMSYPITSRMTCAGYDKKAVDSCQGDSGGPLVCKKRVNNADVWFLWGVVSWGNGCARQGSYGVYARTQYVTEWITQ 1594
+CG +GPS +RIVGG + G+WPWQ ++ G H CGG L+ D WV++AAHCF+ D +A + + ++ W E F V+ L++HP Y +HDYD ALL+LD + +RP C+P F G CWI+GWG L+E GP LQ+ V LI Q C + + Y +T RM CAGY K D+CQGDSGGPLVCK WFL G+VSWG GC R +GVY R V WI Q
Sbjct: 567 DCGLQGPS-SRIVGGAVSSEGEWPWQASLQV------RGRHICGGALIADRWVITAAHCFQEDSMASTVLWTVFLGKVWQNSRWPGEVSFKVSRLLLHP-YHEEDSHDYDVALLQLDHPVVRSAAVRPVCLPARSHFFEPGLHCWITGWGALRE---GGPISNALQKVDVQLIPQDLCSEVY---RYQVTPRMLCAGYRKGKKDACQGDSGGPLVCKALSGR---WFLAGLVSWGLGCGRPNYFGVYTRITGVISWIQQ 808 The following BLAST results are available for this feature:
BLAST of TCONS_00025843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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