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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025834 ID=TCONS_00025834|Name=TCONS_00025834|organism=Clytia hemisphaerica|type=transcript|length=900bp
GAATTATCAGTCAGGGTTGAGTATCTATAAATACCAAAATAGAATTGACC
TTCGACCCCAAATGGTAAAACATAAGGACATATTatagaaagaagaagat
ggatAAAGTTACTCAAGCTATGGTGGCTCACAAAGCCAGTGCTTTAAAAT
CTGATATGAAGAGTTTTGGAGGTGGTTTGATAGGAGACGAAAATCCGGAA
GATGAGCAACGTGAAAAAGCTGAAACAAAGAGGCGCCATAACTCACTAAA
AGATATGGAAGAGCGACGCGAGCGTCAACGAGCAGAACGCCAGGAAGTGC
ATCGTAAACGAGAGGAAGATCGCGAAAAAGTACGAAGTGATATTCGTAAT
AAGTATAAATTGAAAGGAAGTCAAAGTTACGATGGAAGTTATGGTAATAA
CAAAGGTTCAAACGAACATCAATTATCTCAACAAACTGAAGAAATTTGCC
AACAGGAGGAAAAAAGCTGTTCTATACAATGATGAATCTTTAATGCCTTT
CCAACGAAATTCCAGTGCATGATATTGGATTTAGGCTCTTACATCTAAAA
GAGAGAAATCTAACCCAGTGATAACGGTATCGTGGAATTGATCGCAACGC
CAGTTTCTCGCTCGACTACACGACCTATTGCTCCTCGTTCATATATGGAG
TGTTTGGAATCGAGACAGCCTCGTTTTAACATGGTGCTCATCAAAGTCCA
ATTCTTTGAGTTCGATACAATTTTGTATCCCTCAATGCAATAATATTTAT
CTTTCCGATTTGGTTGTATTTATTAAATTGTatattttcgggaaaaaaaC
TATTATTTTGTACTACAGTGTGTCCTGTTGAAAGTTTCAAAggtaaaatt
aaattcaaaaggatatatattcttttttattgAATAGCTATACAATGGAG Run BLAST on NCBI transcript from alignment at sc0000549:182310..188386+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025834 ID=TCONS_00025834|Name=TCONS_00025834|organism=Clytia hemisphaerica|type=transcript|length=6077bp|location=Sequence derived from alignment at sc0000549:182310..188386+ (Clytia hemisphaerica)
GAATTATCAGTCAGGGTTGAGTATCTATAAATACCAAAATAGAATTGACC
TTCGACCCCAAATGGTAAGTATACTTTACCAATTGAAACTCATTTGTCTA
TATAACCATAAAATATCGCACGGCAAGTATACTATTCAGTGATATTCata
actttatttttgaaaaacaatgatccaatttcAATTGGCGAGTCTGAGAT
GACCCAAAATTGCGCAACCCAAAAtctttaaaacggcatttttgaGAGCC
CACGGGGTCAACAGGGTCAAATACTTAAGTGTATGCTATCCCGATACTAT
GCGACACAGAATTGAGGGGAGGGGTCAGGGTAGACtagtaaacaaaaaat
caagctccaaataaaaagaatcgaaggggtgaagttgcatctcttttctg
aatttcaacgactagaagctacttccctcaaaaaacgttgtttaatttta
gaactttttttaggtttttgcgaatccatccaacttttttgactaaatga
tatttcatatcatggaaacatataaataaatgagcatttctaaaaatgca
ataaacagaaagagtcccgcacgggtcagacatacagaaatctgtatgtc
tcctcttacgattttaggtgaagaaaaagaggcgttggaagtagcttcta
gtcagtggcgttgtggcaggggggccggggggccatggcccccccagcgg
agcttttttgaaggggtgccgaagagcaaggggcgccaaaagagattttt
tttaaacgccccaatcttaaaaatcatacgttatgcgccttaaattgcgc
ccaggaccaactttactgagataattttaaaatactttttttcgctcgct
tcgctcgcaatacagttTAATtcgtaacttctttgcaatctagctaattt
ataagtttttttgtgtatagcattattaaatgaaaaatctaactgcgccc
caagaccaatttgctgacaacaatattgaaatcatagaacatcaattttt
tcgctcgcttcgctcgcatttcacattgtttctttaagtttcttttcact
ctagcaagtgtcaaatttgtctatttttatttagtgatttagggtgtctt
ggcagtcgatttttaaaaattttctagtcggccccaaccatggtggggcc
tgctgttccattcatcaaagatatatctactcttctccactaaatatttc
cttcctcattatgcctaggcaaatgaattattaaaagtttagaaactggt
gggtgggggcaccactttggaaaattaaagggggcgccatttaacaaaaa
ttgactttggcccctccagaaaaattttcccacaacgccactgcttctag
tcggttattttccttttctctcacgcgcgctgaatatttaattagtgttt
acattatttgattgacagttttattataaggttataagtaataaccgact
agtttactagtctaggttCAGGGCGGTATAGCCGATTCCGTAATTCCCGT
TAAACCTTCTTAAAAAGACCAAAATTCCCCCTCCCTaaaattcatttgaa
attcaagatttttgtcaAAGATTCCGTgaaattcgaatattttttaccaa
ttccgaaaatCTGCAACAAAGATTCCTTTATCAGTTATGAGTTATGACCA
TGTAAAATTTACGGAAGGTGATTGTATGCCTTGTGATCCTTGTGGAATCA
TCAGCAAACGTGTTAAACCTGACAGTAACACCAACAAAAGTCagagagca
tccagctacggtgcgtaAGGTTATTCGTTTCAAACTTTGGTACAACAAAT
CATTTTGAATTATTCGGTAACTACTAAAGAGAAGGGTCAGGGTCAAAAGT
GGATAAATCCAAAGAATGGAGTGTGGCAAGGAGATACAATCATGGTCCGT
AATGTTTtaggaaaaaggaaaattcccacgaattttcaaaaccacaaacg
atttggaagtataaattaggttggaagggttaGAGTTTTaagttaggttg
gaagggttaaagttttaactttgagttttaacgctagacttaacacTTAA
GACCTCAGAATCTGAGGacccaaaaattcaaaaatggtgCAAAAAAGGCA
caaaatatagcctggaagtctataaacccgtCCCAAATTGAAACatccga
ttaaatttaagagatggcccaaaatcgactttctcgcccgaactccaaat
ttcgaaaaacgaggaaataagctaaattctaaATAGAtgttgaccatgat
tgtagacaGCTGGGAAAGAGGGAATCTGTCCTCGGGTTTCGTGTTCGAGC
tgtggtcgcaaacttactCACTTATACCTAATCAGTCAACTTCCTCCTCG
TGTATTCCAGGTTTTATTCACATTACtgattagtgaggttaagtatcgat
agatacttcacgacgacggacgaattttctCTAGCCTTCATTCGCGCCAA
GCCACTTTTCTACAGGCTGATCGAAAAGCAAGCTAGACTTATCCCGTGTA
TTATATCCGCTTTGCTTCTAGAACGGAAAATCAAGCGGAAATTCGTTCTG
GAAGCAAAGTTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCGTGGCGCGAATGAAGGCTAGagaaaattcgtccgtcgtcg
tgatttatctatcgatacttaacctcactattgaCGCGCCGCCGAAGACA
ATACCCTGACGTAAGCATATCGAAAAGCTGATAACACGCGTAGGGAACGT
GGCTGCCAACTAGTTTTCTTATCGAAAAGCCGAAGGATGTGCTAGGAACG
AGGATCTCAATATTACCTatatcatggaggtataaagaaagacaggagaa
gtatgctattgtaaccaagctcgccctacgattaaaaaagttacgatgta
tgcatgctcataatctcatatatcgtgNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATAATTTTGCAGCCCC
TGTATCTATCGTGTATCAATCTGTCAATGGAAACTAACTAGCTTATGTAT
CTGTGGTGTTTTTCTGTGACGGAGATAGTTAGAGtttgatttgtctagat
cctgactgaTTGAGGACGGCGGTAAATCAGTATTTCAATGGGCCTAAACT
GCCGGTTATCCCAACTCTTTTCAGTCTCTTCGCAGTCCTGCAAATATATA
AACTTGCTACTAAAATAAGCTCCATTTTCAAGATATAATATAATTTCGTT
CGTTAaggtaaaatattttgattatgAACTTGTCTCCCGGGAAATTTGAT
TTGAACACGACCGTGTGCGAGGATACAAAGTTTGGGTCTCAAAATCGGGC
CTTGCAGTCTGACAGTTGTAGAAAAACTTAATGAATTTGTGCACAATCTC
TCCCTTAAGATCTGGAGATCTCGTAATGACGAGATCAGAAATTTTAGGAC
GGAAGATATAAAAAATTGGATCCAAATCGAAAAGGGGGTCGATAAAATTT
CCTATCTTAATTGCTGGAATATCAAAAAAGTCTAATGTTTACAGATCTAT
TAGTGGTTCCTAGTTTGTGATAGAAATGCTTTAGGGGTTTAAGGGGTCAA
CAAAGCTTTTTCTTCATTGATATCTTTCTGCTACTTAACAGGTAAAACAT
AAGGACATATTatagaaagaagaagatggatAAAGTTACTCAAGCTATGG
TGGCTCACAAAGCCAGTGCTTTAAAATCTGATATGAAGAGTTTTGGAGGT
GGTTTGATAGGAGACGAAAATCCGGAAGATGAGCAACGTGAAAAAGCTGA
AACAAAGAGGCGCCATAACTCACTAAAAGATATGGAAGAGCGACGCGAGC
GTCAACGAGCAGAACGCCAGGAAGTGCATCGTAAACGAGAGGAAGATCGC
GAAAAAGTACGAAGTGATATTCGTAATAAGTATAAATTGAAAGGAAGTCA
AAGTTACGATGGAAGTTATGGTAATAACAAAGGTTCAAACGAACATCAAT
TATCTCAACAAACTGAAGAAATTTGCCAACAGGAGGAAAAAAGCTGTTCT
ATACAATGATGAATCTTTAATGCCTTTCCAACGAAATTCCAGTGCATGAT
ATTGGATTTAGGCTCTTACATCTAAAAGAGAGAAATCTAACCCAGTGATA
ACGGTATCGTGGAATTGATCGCAACGCCAGTTTCTCGCTCGACTACACGA
CCTATTGCTCCTCGTTCATATATGGAGTGTTTGGAATCGAGACAGCCTCG
TTTTAACATGGTGCTCATCAAAGTCCAATTCTTTGAGTTCGATACAATTT
TGTATCCCTCAATGCAATAATATTTATCTTTCCGATTTGGTTGTATTTAT
TAAATTGTatattttcgggaaaaaaaCTATTATTTTGTACTACAGTGTGT
CCTGTTGAAAGTTTCAAAggtaaaattaaattcaaaaggatatatattct
tttttattgAATAGCTATACAATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025834-exon-sc0000549-1491911889:182310..182373 | TCONS_00025834-exon-sc0000549-1491911889:182310..182373 | Clytia hemisphaerica | exon |
| TCONS_00025834-exon-sc0000549-1510915933:182310..182373 | TCONS_00025834-exon-sc0000549-1510915933:182310..182373 | Clytia hemisphaerica | exon |
| TCONS_00025834-exon-sc0000549-1575043694:182310..182373 | TCONS_00025834-exon-sc0000549-1575043694:182310..182373 | Clytia hemisphaerica | exon |
| TCONS_00025834-exon-sc0000549-1491911889:187551..188386 | TCONS_00025834-exon-sc0000549-1491911889:187551..188386 | Clytia hemisphaerica | exon |
| TCONS_00025834-exon-sc0000549-1510915933:187551..188386 | TCONS_00025834-exon-sc0000549-1510915933:187551..188386 | Clytia hemisphaerica | exon |
| TCONS_00025834-exon-sc0000549-1575043694:187551..188386 | TCONS_00025834-exon-sc0000549-1575043694:187551..188386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:182310..188386 + |
Blast
The following BLAST results are available for this feature:
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