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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025826 ID=TCONS_00025826|Name=TCONS_00025826|organism=Clytia hemisphaerica|type=transcript|length=2021bp
attttaggGCGTGGCAGGCATTTTTTCACCAAACACAGGAATCGTTGATT
ATGCACGGGTGGCAAGACATTATGCAAAACGATTCCAATCAATGGGTGGA
ATGGTTGCCAGTAATTATGAGGTTCAAGATATCAAATATCGAACAGACAT
CAAATCTGTTGGTGTTGAAATCACTGGTAAATCACAGCCACCAATCAAAT
CACGGTACGTGATCACGTGTGGTGGTCTACAATCTGATCGTATTGCTAAA
ATGACTGGATGCTCGTCCGATCCGAAAATTGTTCCCTTCCGTGGTGATTA
CTTGGtcttgaaaccagaaaaatctCATATGGTCACTACCAATATttacc
cgGTACCAGATCAAAAGTTTAGTTTTCTTGGCGTTCATTTCACACCAAGG
ATGGATGGGAGCATCTGGCTCGGTCCCAACTCTATTCTTGCGTTCAAGAG
GGAAGGTTATGGATTAACTGACTTCAATACGAAAGATTTTCTCGAATCGA
TTGCTTACAGTGGTTTTCGAAATCTACTTAAAACGAATTGGAAATTTGCA
GCACGCGAACTATACAATGGTTTTGTGATCAGTAAAACAGTCGAAAGTGC
CAAGAAATTCATTCCATCGTTAACTGTTGATGACTTTGTTAGGGGACCTT
CTGGTGTTCGTGCACAAGCTCTTCACACGAACGGTAGTCTTGAAAACGAT
TTCATATTCGATACGGGAAGAGGTGCCATCGGAAATCATTGTTTACACGT
CCGGAACGCCCCTTCACCGGCGGCCACGTCATCATTAGCTATTGCGGAAA
TGATAGTTGATAAAGTGGAAGAGAATTGGAGCGATCTGAAAAAATAGGGT
ATTTTTCTCGTGTAGTATGAACAACATTTTCAGGGTTTAACCTTGAAGAA
AGGTTGAGCGATCCGAGCAGACTTGAGAAAATAAAGCACTGTTTATTTCT
ATTAGACAGTATTATAGCTTAAAAACAAGCATTTGTGTTGTTAGTTTACT
TGTTTTCAAGCTataataagtaatagttatcggacagttgcgagtacaat
atgagaaatagtTTATTACGAGTAAAATATACGGacaatccggaacgagt
gaagtatttctcatattgtacgagcaaatatctgataactggtttatcgg
tgaccccaaaaatgcactttttgtgttggagaaAAGCGCaaggcactttt
gtagcaaagtgacgttagattgcttctaccgctacaatgcaacaacaatt
tttcgtcaatttatattttgtacatggaaaatacaagatatattattttt
taaccaatcagatccCTGTATCTTCCTATCAGAGGTGACTACCCGTTACT
TATAAACATAGCTAAAACACCCGCTgttcacagacccggtaggatttttt
cagctaatggggataaaaataacggactggaactcgatggggattgatat
tcccatatttttaatggctggggatttcaattcttttgttttttttaagt
cagaaagttcagtggggatgggaaaaatagcattagtttgtttgattatt
ttcagtggggacaaaatttggaggataattttccactggagacgatattt
tggttatttttttcagtgggaaggggtcccagcgggtctgtgagaagggg
ttNATTATTTTTCAGCGAGGATTagtttgtttgattattttcagtgggga
caaaatttggaggataattttccactggagacgatattttggtaattttt
ttcagtgggaaggggtcccagcgggtctgtgagaaggggttgtatAAATC
TTTATGAGCCTATATGTGATTATGCAATTTGGTAAATTGTTCATTATGTA
TAGTTTGAAGGACTGAATATTGACCGTCCGCTACTCCTCATGTAAATTAA
ATGGATATTCAAGTTAAAGCTCTTGAATGGTTTCGatcatttctttttga
aagatCACAGTTTGTTTCAGTCTCTGGTAAAAACTCTTCTTCTAAACACA
TGCAACATGGTGTCCCCCAAG Run BLAST on NCBI protein sequence of TCONS_00025826-protein >TCONS_00025826-protein ID=TCONS_00025826-protein|Name=TCONS_00025826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MGGMVASNYEVQDIKYRTDIKSVGVEITGKSQPPIKSRYVITCGGLQSDR
IAKMTGCSSDPKIVPFRGDYLVLKPEKSHMVTTNIYPVPDQKFSFLGVHF
TPRMDGSIWLGPNSILAFKREGYGLTDFNTKDFLESIAYSGFRNLLKTNW
KFAARELYNGFVISKTVESAKKFIPSLTVDDFVRGPSGVRAQALHTNGSL
ENDFIFDTGRGAIGNHCLHVRNAPSPAATSSLAIAEMIVDKVEENWSDLK
K Run BLAST on NCBI transcript from alignment at sc0000549:130115..135332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025826 ID=TCONS_00025826|Name=TCONS_00025826|organism=Clytia hemisphaerica|type=transcript|length=5218bp|location=Sequence derived from alignment at sc0000549:130115..135332+ (Clytia hemisphaerica)
attttaggGCGTGGCAGGCATTTTTTCACCAAACACAGGAATCGTTGATT
ATGCACGGGTGGCAAGACATTATGCAAAACGATTCCAATCAATGGGTGGA
ATGGTTGCCAGTAATTATGAGGTAAGCATCCATCTTTATAAATATTTACT
ATTATTTGGCAAAGTCTTTTTTTACGAGACTTTGTTAAAAGCCCCACGAT
CTATTGATCGCTACATCAAGACTATAGGGTTTTGTACAGGCGCTTACAAA
ACTCACTCATTGGCGGTTTTGAGGCCTTCAAAAAGAAGGTTACGAAGTCA
TCAAATAGAATACTTGTACAGTGGATTCTCGCCAATTCGAGCTTCTCTCA
TCCAGATCGTTCTATAATTCGAAATAATTCTCAGTCCCCGACAAGGGAAA
GCCATCGTAAAATGCTCTCTTTATtacgaatctttctataattcgaacaa
aatagACTTCCCGTTCCACGTTGAATTAGCATGAATTAACTGTACTTTAG
AATTTTGCTGGACAATTCCTTTTTACTACTTTGTAAGCAAGTTTTGAGCT
ATACGTTCTCAACTAAAAAAGCGTCTAAAAGTAGTTAAATGTGCATCGAA
TCAACGTTGTGTTTTACTTTTAGGTTCAAGATATCAAATATCGAACAGAC
ATCAAATCTGTTGGTGTTGAAATCACTGGTAAATCACAGGTATCATGCAC
CTTATTGTAGAtaattttcgataattttttcaccTAATTTCTTTCGTCTT
CCTAAGGGAAATTTCGGGTTATAATTTTGTCACGCATAAAGGGgccaaat
ttcgcgaaaatcgcgaaaattaattcactTAAGGGTATAGAAATCTTTAT
AAAGGCTATTTACCAGTGGTTTTCTTTTTGTTAGTTATTGACCATATTGT
TAATGCACACAAAGCTAGTTTTGCTTAAGCTATGAAAGGTATCATTAAAA
TTAGAGATAATTATCAGCTCACGGGAATTACATTCATTCGTAGGGTACAG
GATCCTTTGAGCTGTGATTCTATTTCTCTTCTACTGTAGAAGTACTTACT
GTTTTCTAATAACGAATTTATGAAGAGATGTTTGTCTGCAACGGAGATTG
TTGGCttctaatttgtttttttgatttttcgggTCCAAACTGCGGGTTTT
GCCAAATCGCTTCAGCCACTTCTCtctcctcaaaagtgcaaatatataaa
cTTGCAAATATCGATGAACTGACCAACTTACGTTACGTAATTTGTgacta
atgtcgacatcccttttCTAATTTCAATACCCTTCTTTAGGggtaggaat
aataggaaggtcggaattgctgattgaaactaattttctttgcttatgAT
CGCTATCAGAGAGGAAATATTATTTTGCCCATCAGTGATTCCgatcttcc
tattattcctatatCTAAGAAAgaatgtcgaaattagaagagatatgtcg
acattagaccaacttacggtacaatacaccttttcgaccgtagcttctaa
ttgccgcgcgggcattttttaccaccctaaactcgatccaatcctttttt
tacacttctTTCTATTGTCTTtcggtgcgaaaaaaagactgggacggttt
tagggtggtaaaaaatgcccgcgcggtaattggcggctacagtcgaaaag
gtgtatagtaACGCACACTTAGTATCGCAAAATaccatttttaattattt
ttactttcatATCAATCAGCCACCAATCAAATCACGGTACGTGATCACGT
GTGGTGGTCTACAATCTGATCGTATTGCTAAAATGACTGGATGCTCGTCC
GATCCGAAAATTGTTCCCTTCCGTGGTGATTACTTGGtcttgaaaccaga
aaaatctCATATGGTCACTACCAATATttacccggtaggatttttttata
CATATAATACAGAAGActcccataactcgaacctctataacttgaatgcc
tccttaactcgaatagATTtgctggtcccttcagttaacaatggcTTATG
AACcgatctccataactcgaaatttccaaaatttatacAAATTTCTTTCC
ACCCTGCGTATTCAATTGATGGAGACTCCACTTTACAGACAGGTAGAAGA
ACGGACACGTTAGGGTGGAGGGTGATTCACTCAATGTGAAAACGTTGGAT
gatggacacaaaaaattactgTTTTTAAATCGGTCTCATGCAATGTAAAA
AGATTGTCTGCAAATGAACTCATATGATGCAATGTACACCTTTTTTTTCG
ACCTTGCAGATTTAATTTTTAGCCTCTTTTACTTTCAAAAGCCTGAAAGA
TTTTCCCTTAAGAGCTGCAAATATGATAAGTCTGAGGGGAACCTTGTTAG
AGCTTAGTTCTGTAATTTCGAACTCAAATTGAATGGTTTGAGATGGAAGT
GGCGTGCGAGAACAGCTATCGATTCTTGTATAACCTTTATATATCCATTC
TTTCGTATAATCGTATCGTAAGACGATAAgctattttagaaaatatttgt
aCCTCCTATGGTTTTGAGAAGGTGTTCTTTAtttgaccccctggattttt
ttttaatgtttcaggacccccttggatattttttctcatttttggacCAC
CCGGGATTTTTGACCATCCTGGTTTTTTGAACCCGAAAAAAAGCAgaccc
cactggattttttattttccggaccaccctggacgtcacgcctcctcaac
ataggggatGCAATCTTTATATACACATTCCATCCATTCTTTTTGTAGGT
ACCAGATCAAAAGTTTAGTTTTCTTGGCGTTCATTTCACACCAAGGATGG
ATGGGAGCATCTGGCTCGGTCCCAACTCTATTCTTGCGTTCAAGAGGGAA
GGTTATGGATTAACTGACTTCAATACGAAAGATTTTCTCGAATCGATTGC
TTACAGGTGACCTCTTAATTATTGCTTCAATGGGCCTATTTGCGCCTGCC
CTAATTTAGCGCCGGCACTTATTACACCAAAgctctttttccatttttag
cctGGCCCTAATTTGATTCCACCAGCGGTGAATAAAATAACGTCAATAAG
GGCTGGCGTAAAAATAGCTGATTCCTGTTCTTTTCCTGAGCGTTCATTAT
CACTTTGTTTAAAATCAATTAATGGTGGCCCATACATGATAGttatagat
tttttattttatctatatAGTGGTTTTCGAAATCTACTTAAAACGAATTG
GAAATTTGCAGCACGCGAACTATACAATGGTTTTGTGATCAGTAAAACAG
TCGAAAGTGCCAAGAAATTCATTCCATCGTTAACTGTTGATGACTTTGTT
AGGTATGTAATATGTGTGCTTTATGTGATAACTACAATCCCCCAATTTAT
ATCCGAGACACTTCACATGGTCCCCCTTTCCCCCACTGTCAGCGTTGAGT
TCTCGGTCATTTCCGGACTCAACACTGATAGTGGGGTCCGGGGGACGGAT
TTTTATCTTGCAAAAATGTTTAGAATTcgtctcaatatattttttggagG
ATTGTAGGTTTACATcgatttgaaaataatgcttagctcgTAAAATTATT
CATGTGTTATAAAAcgaatcatcaaaacaaaatctcTATGTATGCTAACA
GCTACATATATGTATAGAATGGCTTTAATGAAAGATACACTTTTGGGAAA
TACCATTAGGAGTGAGATAATACAACTATAGATTTATTTCTGAAGAAAAA
TATAACTAATATCGGCTAACTTTTTTATAAATCTGCTTCTTGCAAGTTAT
TAACTTTGTTGCACTGAAATATTCTATAGAATGCATGGATATGTCGTCTT
AGGACTTGGATGTTACAatttattatttcaaatcttTAGGGGACCTTCTG
GTGTTCGTGCACAAGCTCTTCACACGAACGGTAGTCTTGAAAACGATTTC
ATATTCGATACGGGAAGAGGTGCCATCGGAAATCATTGTTTACACGTCCG
GAACGCCCCTTCACCGGCGGCCACGTCATCATTAGCTATTGCGGAAATGA
TAGTTGATAAAGTGGAAGAGAATTGGAGCGATCTGAAAAAATAGGGTATT
TTTCTCGTGTAGTATGAACAACATTTTCAGGGTTTAACCTTGAAGAAAGG
TTGAGCGATCCGAGCAGACTTGAGAAAATAAAGCACTGTTTATTTCTATT
AGACAGTATTATAGCTTAAAAACAAGCATTTGTGTTGTTAGTTTACTTGT
TTTCAAGCTataataagtaatagttatcggacagttgcgagtacaatatg
agaaatagtTTATTACGAGTAAAATATACGGacaatccggaacgagtgaa
gtatttctcatattgtacgagcaaatatctgataactggtttatcggtga
ccccaaaaatgcactttttgtgttggagaaAAGCGCaaggcacttttgta
gcaaagtgacgttagattgcttctaccgctacaatgcaacaacaattttt
cgtcaatttatattttgtacatggaaaatacaagatatattattttttaa
ccaatcagatccCTGTATCTTCCTATCAGAGGTGACTACCCGTTACTTAT
AAACATAGCTAAAACACCCGCTgttcacagacccggtaggattttttcag
ctaatggggataaaaataacggactggaactcgatggggattgatattcc
catatttttaatggctggggatttcaattcttttgttttttttaagtcag
aaagttcagtggggatgggaaaaatagcattagtttgtttgattattttc
agtggggacaaaatttggaggataattttccactggagacgatattttgg
ttatttttttcagtgggaaggggtcccagcgggtctgtgagaaggggttN
ATTATTTTTCAGCGAGGATTagtttgtttgattattttcagtggggacaa
aatttggaggataattttccactggagacgatattttggtaatttttttc
agtgggaaggggtcccagcgggtctgtgagaaggggttgtatAAATCTTT
ATGAGCCTATATGTGATTATGCAATTTGGTAAATTGTTCATTATGTATAG
TTTGAAGGACTGAATATTGACCGTCCGCTACTCCTCATGTAAATTAAATG
GATATTCAAGTTAAAGCTCTTGAATGGTTTCGatcatttctttttgaaag
atCACAGTTTGTTTCAGTCTCTGGTAAAAACTCTTCTTCTAAACACATGC
AACATGGTGTCCCCCAAG Coding sequence (CDS) from alignment at sc0000549:130115..135332+ >TCONS_00025826 ID=TCONS_00025826|Name=TCONS_00025826|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0000549:130115..135332+ (Clytia hemisphaerica)
ATGGGTGGAATGGTTGCCAGTAATTATGAGGTTCAAGATATCAAATATCG
AACAGACATCAAATCTGTTGGTGTTGAAATCACTGGTAAATCACAGCCAC
CAATCAAATCACGGTACGTGATCACGTGTGGTGGTCTACAATCTGATCGT
ATTGCTAAAATGACTGGATGCTCGTCCGATCCGAAAATTGTTCCCTTCCG
TGGTGATTACTTGGtcttgaaaccagaaaaatctCATATGGTCACTACCA
ATATttacccgGTACCAGATCAAAAGTTTAGTTTTCTTGGCGTTCATTTC
ACACCAAGGATGGATGGGAGCATCTGGCTCGGTCCCAACTCTATTCTTGC
GTTCAAGAGGGAAGGTTATGGATTAACTGACTTCAATACGAAAGATTTTC
TCGAATCGATTGCTTACAGTGGTTTTCGAAATCTACTTAAAACGAATTGG
AAATTTGCAGCACGCGAACTATACAATGGTTTTGTGATCAGTAAAACAGT
CGAAAGTGCCAAGAAATTCATTCCATCGTTAACTGTTGATGACTTTGTTA
GGGGACCTTCTGGTGTTCGTGCACAAGCTCTTCACACGAACGGTAGTCTT
GAAAACGATTTCATATTCGATACGGGAAGAGGTGCCATCGGAAATCATTG
TTTACACGTCCGGAACGCCCCTTCACCGGCGGCCACGTCATCATTAGCTA
TTGCGGAAATGATAGTTGATAAAGTGGAAGAGAATTGGAGCGATCTGAAA
AAATAGATGGGTGGAATGGTTGCCAGTAATTATGAGGTTCAAGATATCAA
ATATCGAACAGACATCAAATCTGTTGGTGTTGAAATCACTGGTAAATCAC
AGCCACCAATCAAATCACGGTACGTGATCACGTGTGGTGGTCTACAATCT
GATCGTATTGCTAAAATGACTGGATGCTCGTCCGATCCGAAAATTGTTCC
CTTCCGTGGTGATTACTTGGtcttgaaaccagaaaaatctCATATGGTCA
CTACCAATATttacccgGTACCAGATCAAAAGTTTAGTTTTCTTGGCGTT
CATTTCACACCAAGGATGGATGGGAGCATCTGGCTCGGTCCCAACTCTAT
TCTTGCGTTCAAGAGGGAAGGTTATGGATTAACTGACTTCAATACGAAAG
ATTTTCTCGAATCGATTGCTTACAGTGGTTTTCGAAATCTACTTAAAACG
AATTGGAAATTTGCAGCACGCGAACTATACAATGGTTTTGTGATCAGTAA
AACAGTCGAAAGTGCCAAGAAATTCATTCCATCGTTAACTGTTGATGACT
TTGTTAGGGGACCTTCTGGTGTTCGTGCACAAGCTCTTCACACGAACGGT
AGTCTTGAAAACGATTTCATATTCGATACGGGAAGAGGTGCCATCGGAAA
TCATTGTTTACACGTCCGGAACGCCCCTTCACCGGCGGCCACGTCATCAT
TAGCTATTGCGGAAATGATAGTTGATAAAGTGGAAGAGAATTGGAGCGAT
CTGAAAAAATAGATGGGTGGAATGGTTGCCAGTAATTATGAGGTTCAAGA
TATCAAATATCGAACAGACATCAAATCTGTTGGTGTTGAAATCACTGGTA
AATCACAGCCACCAATCAAATCACGGTACGTGATCACGTGTGGTGGTCTA
CAATCTGATCGTATTGCTAAAATGACTGGATGCTCGTCCGATCCGAAAAT
TGTTCCCTTCCGTGGTGATTACTTGGtcttgaaaccagaaaaatctCATA
TGGTCACTACCAATATttacccgGTACCAGATCAAAAGTTTAGTTTTCTT
GGCGTTCATTTCACACCAAGGATGGATGGGAGCATCTGGCTCGGTCCCAA
CTCTATTCTTGCGTTCAAGAGGGAAGGTTATGGATTAACTGACTTCAATA
CGAAAGATTTTCTCGAATCGATTGCTTACAGTGGTTTTCGAAATCTACTT
AAAACGAATTGGAAATTTGCAGCACGCGAACTATACAATGGTTTTGTGAT
CAGTAAAACAGTCGAAAGTGCCAAGAAATTCATTCCATCGTTAACTGTTG
ATGACTTTGTTAGGGGACCTTCTGGTGTTCGTGCACAAGCTCTTCACACG
AACGGTAGTCTTGAAAACGATTTCATATTCGATACGGGAAGAGGTGCCAT
CGGAAATCATTGTTTACACGTCCGGAACGCCCCTTCACCGGCGGCCACGT
CATCATTAGCTATTGCGGAAATGATAGTTGATAAAGTGGAAGAGAATTGG
AGCGATCTGAAAAAATAGATGGGTGGAATGGTTGCCAGTAATTATGAGGT
TCAAGATATCAAATATCGAACAGACATCAAATCTGTTGGTGTTGAAATCA
CTGGTAAATCACAGCCACCAATCAAATCACGGTACGTGATCACGTGTGGT
GGTCTACAATCTGATCGTATTGCTAAAATGACTGGATGCTCGTCCGATCC
GAAAATTGTTCCCTTCCGTGGTGATTACTTGGtcttgaaaccagaaaaat
ctCATATGGTCACTACCAATATttacccgGTACCAGATCAAAAGTTTAGT
TTTCTTGGCGTTCATTTCACACCAAGGATGGATGGGAGCATCTGGCTCGG
TCCCAACTCTATTCTTGCGTTCAAGAGGGAAGGTTATGGATTAACTGACT
TCAATACGAAAGATTTTCTCGAATCGATTGCTTACAGTGGTTTTCGAAAT
CTACTTAAAACGAATTGGAAATTTGCAGCACGCGAACTATACAATGGTTT
TGTGATCAGTAAAACAGTCGAAAGTGCCAAGAAATTCATTCCATCGTTAA
CTGTTGATGACTTTGTTAGGGGACCTTCTGGTGTTCGTGCACAAGCTCTT
CACACGAACGGTAGTCTTGAAAACGATTTCATATTCGATACGGGAAGAGG
TGCCATCGGAAATCATTGTTTACACGTCCGGAACGCCCCTTCACCGGCGG
CCACGTCATCATTAGCTATTGCGGAAATGATAGTTGATAAAGTGGAAGAG
AATTGGAGCGATCTGAAAAAATAGATGGGTGGAATGGTTGCCAGTAATTA
TGAGGTTCAAGATATCAAATATCGAACAGACATCAAATCTGTTGGTGTTG
AAATCACTGGTAAATCACAGCCACCAATCAAATCACGGTACGTGATCACG
TGTGGTGGTCTACAATCTGATCGTATTGCTAAAATGACTGGATGCTCGTC
CGATCCGAAAATTGTTCCCTTCCGTGGTGATTACTTGGtcttgaaaccag
aaaaatctCATATGGTCACTACCAATATttacccgGTACCAGATCAAAAG
TTTAGTTTTCTTGGCGTTCATTTCACACCAAGGATGGATGGGAGCATCTG
GCTCGGTCCCAACTCTATTCTTGCGTTCAAGAGGGAAGGTTATGGATTAA
CTGACTTCAATACGAAAGATTTTCTCGAATCGATTGCTTACAGTGGTTTT
CGAAATCTACTTAAAACGAATTGGAAATTTGCAGCACGCGAACTATACAA
TGGTTTTGTGATCAGTAAAACAGTCGAAAGTGCCAAGAAATTCATTCCAT
CGTTAACTGTTGATGACTTTGTTAGGGGACCTTCTGGTGTTCGTGCACAA
GCTCTTCACACGAACGGTAGTCTTGAAAACGATTTCATATTCGATACGGG
AAGAGGTGCCATCGGAAATCATTGTTTACACGTCCGGAACGCCCCTTCAC
CGGCGGCCACGTCATCATTAGCTATTGCGGAAATGATAGTTGATAAAGTG
GAAGAGAATTGGAGCGATCTGAAAAAATAGATGGGTGGAATGGTTGCCAG
TAATTATGAGGTTCAAGATATCAAATATCGAACAGACATCAAATCTGTTG
GTGTTGAAATCACTGGTAAATCACAGCCACCAATCAAATCACGGTACGTG
ATCACGTGTGGTGGTCTACAATCTGATCGTATTGCTAAAATGACTGGATG
CTCGTCCGATCCGAAAATTGTTCCCTTCCGTGGTGATTACTTGGtcttga
aaccagaaaaatctCATATGGTCACTACCAATATttacccgGTACCAGAT
CAAAAGTTTAGTTTTCTTGGCGTTCATTTCACACCAAGGATGGATGGGAG
CATCTGGCTCGGTCCCAACTCTATTCTTGCGTTCAAGAGGGAAGGTTATG
GATTAACTGACTTCAATACGAAAGATTTTCTCGAATCGATTGCTTACAGT
GGTTTTCGAAATCTACTTAAAACGAATTGGAAATTTGCAGCACGCGAACT
ATACAATGGTTTTGTGATCAGTAAAACAGTCGAAAGTGCCAAGAAATTCA
TTCCATCGTTAACTGTTGATGACTTTGTTAGGGGACCTTCTGGTGTTCGT
GCACAAGCTCTTCACACGAACGGTAGTCTTGAAAACGATTTCATATTCGA
TACGGGAAGAGGTGCCATCGGAAATCATTGTTTACACGTCCGGAACGCCC
CTTCACCGGCGGCCACGTCATCATTAGCTATTGCGGAAATGATAGTTGAT
AAAGTGGAAGAGAATTGGAGCGATCTGAAAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025826-exon-sc0000549-1491911889:130115..130235 | TCONS_00025826-exon-sc0000549-1491911889:130115..130235 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1510915933:130115..130235 | TCONS_00025826-exon-sc0000549-1510915933:130115..130235 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1575043694:130115..130235 | TCONS_00025826-exon-sc0000549-1575043694:130115..130235 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1491911889:130738..130803 | TCONS_00025826-exon-sc0000549-1491911889:130738..130803 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1510915933:130738..130803 | TCONS_00025826-exon-sc0000549-1510915933:130738..130803 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1575043694:130738..130803 | TCONS_00025826-exon-sc0000549-1575043694:130738..130803 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1491911889:131834..131998 | TCONS_00025826-exon-sc0000549-1491911889:131834..131998 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1510915933:131834..131998 | TCONS_00025826-exon-sc0000549-1510915933:131834..131998 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1575043694:131834..131998 | TCONS_00025826-exon-sc0000549-1575043694:131834..131998 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1491911889:132863..133020 | TCONS_00025826-exon-sc0000549-1491911889:132863..133020 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1510915933:132863..133020 | TCONS_00025826-exon-sc0000549-1510915933:132863..133020 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1575043694:132863..133020 | TCONS_00025826-exon-sc0000549-1575043694:132863..133020 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1491911889:133285..133416 | TCONS_00025826-exon-sc0000549-1491911889:133285..133416 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1510915933:133285..133416 | TCONS_00025826-exon-sc0000549-1510915933:133285..133416 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1575043694:133285..133416 | TCONS_00025826-exon-sc0000549-1575043694:133285..133416 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1491911889:133954..135332 | TCONS_00025826-exon-sc0000549-1491911889:133954..135332 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1510915933:133954..135332 | TCONS_00025826-exon-sc0000549-1510915933:133954..135332 | Clytia hemisphaerica | exon |
| TCONS_00025826-exon-sc0000549-1575043694:133954..135332 | TCONS_00025826-exon-sc0000549-1575043694:133954..135332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:130115..135332 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006076 | FAD-dep_OxRdtase |
| IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
BLAST of TCONS_00025826 vs. Swiss-Prot (Human)
Match: L2HDH (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=L2HGDH PE=1 SV=3) HSP 1 Score: 310.457 bits (794), Expect = 3.263e-97 Identity = 147/281 (52.31%), Postives = 196/281 (69.75%), Query Frame = 2
Query: 8 GVAGIFSPNTGIVDYARVARHYAKRFQSMGGMVASNYEVQDIKYRTDIKSVGVE-------ITGKSQPPIKSRYVITCGGLQSDRIAKMTGCSSDPKIVPFRGDYLVLKPEKSHMVTTNIYPVPDQKFSFLGVHFTPRMDGSIWLGPNSILAFKREGYGLTDFNTKDFLESIAYSGFRNLLKTNWKFAARELYNGFVISKTVESAKKFIPSLTVDDFVRGPSGVRAQALHTNGSLENDFIFDTGRGAIGNHCLHVRNAPSPAATSSLAIAEMIVDKVEENW 829
G+ I P+TGIVDY +VA +A+ FQ GG V +N+EV+ I+ + S ++ I I+ +YV+TC GL SDRI++++GC+ DP+IVPFRGDYL+LKPEK ++V NIYPVPD +F FLGVHFTPRMDGSIWLGPN++LAFKREGY DF+ D ++ I SG L N+ + E+Y + TV+ +KFIP +T+ D +RGP+GVRAQAL +G+L DF+FD G G IGN LHVRNAPSPAATSS+AI+ MI D+V++ +
Sbjct: 181 GLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKLASQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILRGPAGVRAQALDRDGNLVEDFVFDAGVGDIGNRILHVRNAPSPAATSSIAISGMIADEVQQRF 461
The following BLAST results are available for this feature:
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