TCONS_00025825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025825
Unique NameTCONS_00025825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025825 ID=TCONS_00025825|Name=TCONS_00025825|organism=Clytia hemisphaerica|type=transcript|length=1690bp
NNGCTAAAAGTAACAAATCTATACCCAACACTCACCCCAACTTTTAAAAA
GGTGACAACACAATATCCAATCACTAAAATCAATCTTTGTAATATTCCAA
CTTCACTTTTATATCATATCTGGCATGATGATATATACCGCCTAATTGTC
TTTGGAACCAAACATTTTCTATCATAAAACTAACATTTATTCCTCCACCT
GCGTTGCATACGTTCAACCACCAAGGAATATGTACATGGAGAAGAGAAAA
CATAATGTTAGAACAAACAAGGATCTCCCCAAGCAAAACAAGCAAGATCG
GGAGTAAACAGGAATTTACAACCGTTGTACGGGCGGTTCACCTCTCTTTC
AGCGATATGCCTACATCACATAGTTCACTTAAAACACATATTTTCATTTC
TCGTCCAAATCATCAAATTTTACGAAACCAAATCTCCCCAGGCCACTTGG
CAAGATTGGAAGTAAACAGGAGATCTATGGGATCCTGCCTTTCAGCCATT
TGCTTACACTTGAATTTCGTTCCATTTAACTGTCCTATAATCTCAGGGTT
TGGAAAGAGGGGGGTTCAATTCACACATATCATCTCTCCCTCCTCCCACT
CAATTAAAGTGGTGAATTAATCTgcctggaaaaaattttctcaaggAATA
TTTTTATACTTCTGTCATTTTCCGATTTGAAATATTTGTTGTCCagtaaa
caaataaaaagtccaaaattaaatttaaaggaGTACCGTACTTCCTACAT
CAATAATAAACTGACACAATAAGTTGGGTTCCCATCTTTTGATAAACTCC
AGATCATGCATTGATTTAACTTTTTTCCCTTTTGACCCATAGAAGAGTGA
GTCTGTATTCAGTCATTCCAATTTGAAGAATTtcaacccacaaaacaaaa
caaaacaatcaacCAGTGCAGCTTCTTTGACCAAACTCAATCCGCTCCAG
ATTCTCTGTTGGCAGTCATTCTTGTGGCGTTGTCTCGTGACCAACCCACT
GCACTCCGTTTCCAATCTGGCAGCCCCATTTGACGTTGTCTCTTGACTGA
CGGTTGATGTTGTTGTTAACTGTTAGTTATGATGAACTCCATAAATTGTA
CATTCTGTAGCTTGGTGGTAAATTTTTGAAGCCGATGATCGAGTAAGCCT
GCCATATTATCACCataacaaccctctgctaccaATGTTGGGTGGCTGTT
TTGATCTTTTAATATGATGNTttatcctttatgtttaaaatcacgaaaat
gtacTAATGTATTATGTGATGATTCAATAGAACTAGATCAACCAAAATTA
ATCAAGCAACCTCTAATCAAACTGTAATCAAATTGAAGAGGGAAGTAAAG
TTCTATAGGTGTTGGACTTGGTTAAGTAAATTAACAACTATCGTTCAATT
CTATTTGATGAAGGGTTTGTTTGACATCCCTTGGTATTTAGATCCATCCA
TCCACTAAGTAAGATAACGAGTTTTGTGGATTTGCCGCATTTTCTGAATC
CACAGGAAACCATTCTATACTGCCAAATTTATGACATAGCTTTTTGATTT
ATTAGGTCTTTCCATGAAACAAATTATGATATTGCAATAGTTGGGGGAGG
AATCGTTGGCTTGGCAACTGCTCAAGAATTACAACAACGTAATCAAAACC
TAAAATGCATTGTTTTAGAAAAAGAGGATCAGTTAGGTAT
Run BLAST on NCBI

transcript from alignment at sc0000549:125344..127033+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025825 ID=TCONS_00025825|Name=TCONS_00025825|organism=Clytia hemisphaerica|type=transcript|length=1690bp|location=Sequence derived from alignment at sc0000549:125344..127033+ (Clytia hemisphaerica)
NNGCTAAAAGTAACAAATCTATACCCAACACTCACCCCAACTTTTAAAAA
GGTGACAACACAATATCCAATCACTAAAATCAATCTTTGTAATATTCCAA
CTTCACTTTTATATCATATCTGGCATGATGATATATACCGCCTAATTGTC
TTTGGAACCAAACATTTTCTATCATAAAACTAACATTTATTCCTCCACCT
GCGTTGCATACGTTCAACCACCAAGGAATATGTACATGGAGAAGAGAAAA
CATAATGTTAGAACAAACAAGGATCTCCCCAAGCAAAACAAGCAAGATCG
GGAGTAAACAGGAATTTACAACCGTTGTACGGGCGGTTCACCTCTCTTTC
AGCGATATGCCTACATCACATAGTTCACTTAAAACACATATTTTCATTTC
TCGTCCAAATCATCAAATTTTACGAAACCAAATCTCCCCAGGCCACTTGG
CAAGATTGGAAGTAAACAGGAGATCTATGGGATCCTGCCTTTCAGCCATT
TGCTTACACTTGAATTTCGTTCCATTTAACTGTCCTATAATCTCAGGGTT
TGGAAAGAGGGGGGTTCAATTCACACATATCATCTCTCCCTCCTCCCACT
CAATTAAAGTGGTGAATTAATCTgcctggaaaaaattttctcaaggAATA
TTTTTATACTTCTGTCATTTTCCGATTTGAAATATTTGTTGTCCagtaaa
caaataaaaagtccaaaattaaatttaaaggaGTACCGTACTTCCTACAT
CAATAATAAACTGACACAATAAGTTGGGTTCCCATCTTTTGATAAACTCC
AGATCATGCATTGATTTAACTTTTTTCCCTTTTGACCCATAGAAGAGTGA
GTCTGTATTCAGTCATTCCAATTTGAAGAATTtcaacccacaaaacaaaa
caaaacaatcaacCAGTGCAGCTTCTTTGACCAAACTCAATCCGCTCCAG
ATTCTCTGTTGGCAGTCATTCTTGTGGCGTTGTCTCGTGACCAACCCACT
GCACTCCGTTTCCAATCTGGCAGCCCCATTTGACGTTGTCTCTTGACTGA
CGGTTGATGTTGTTGTTAACTGTTAGTTATGATGAACTCCATAAATTGTA
CATTCTGTAGCTTGGTGGTAAATTTTTGAAGCCGATGATCGAGTAAGCCT
GCCATATTATCACCataacaaccctctgctaccaATGTTGGGTGGCTGTT
TTGATCTTTTAATATGATGNTttatcctttatgtttaaaatcacgaaaat
gtacTAATGTATTATGTGATGATTCAATAGAACTAGATCAACCAAAATTA
ATCAAGCAACCTCTAATCAAACTGTAATCAAATTGAAGAGGGAAGTAAAG
TTCTATAGGTGTTGGACTTGGTTAAGTAAATTAACAACTATCGTTCAATT
CTATTTGATGAAGGGTTTGTTTGACATCCCTTGGTATTTAGATCCATCCA
TCCACTAAGTAAGATAACGAGTTTTGTGGATTTGCCGCATTTTCTGAATC
CACAGGAAACCATTCTATACTGCCAAATTTATGACATAGCTTTTTGATTT
ATTAGGTCTTTCCATGAAACAAATTATGATATTGCAATAGTTGGGGGAGG
AATCGTTGGCTTGGCAACTGCTCAAGAATTACAACAACGTAATCAAAACC
TAAAATGCATTGTTTTAGAAAAAGAGGATCAGTTAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014515XLOC_014515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025825-exon-sc0000549-1491911889:125344..127033TCONS_00025825-exon-sc0000549-1491911889:125344..127033Clytia hemisphaericaexon
TCONS_00025825-exon-sc0000549-1510915933:125344..127033TCONS_00025825-exon-sc0000549-1510915933:125344..127033Clytia hemisphaericaexon
TCONS_00025825-exon-sc0000549-1575043694:125344..127033TCONS_00025825-exon-sc0000549-1575043694:125344..127033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:125344..127033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.73177	8.43337	8.46865	5.98241	0.911831	1.20702	2.05437	1.91428	1.33558	0.803278	2.62034	0.936681	1.35163	1.19986	0.614297	1.41328	0.529513	1.03601	1.02039	0.595588	1.48232	1.06249	5.97149	5.11287	0.57313	1.11579	0.62788	1.1189	3.49834	2.45754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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