TCONS_00025818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025818
Unique NameTCONS_00025818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025818 ID=TCONS_00025818|Name=TCONS_00025818|organism=Clytia hemisphaerica|type=transcript|length=238bp
GCCTGTTACTTTGTTAACTGTTGCTTTAAATGCTGCAATTTATTTGAGAG
TAGTACCTGGGCTACCTTCCGTACACAGTGCATGTACAAGTAACAATTTT
gtgttaaaaaaaaaggaatggAAGCGACTTTTTCTatcatcattttatca
tttgGACGATATGCATTTGTATTTTAACATGGTGTCTTTCATATGGAAAG
GAATGAAACTAGAACAAGATTTAGGAAGGAGAAAGTAT
Run BLAST on NCBI

transcript from alignment at sc0000547:212521..212758

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025818 ID=TCONS_00025818|Name=TCONS_00025818|organism=Clytia hemisphaerica|type=transcript|length=238bp|location=Sequence derived from alignment at sc0000547:212521..212758 (Clytia hemisphaerica)
ATACTTTCTCCTTCCTAAATCTTGTTCTAGTTTCATTCCTTTCCATATGA
AAGACACCATGTTAAAATACAAATGCATATCGTCcaaatgataaaatgat
gatAGAAAAAGTCGCTTccattcctttttttttaacacAAAATTGTTACT
TGTACATGCACTGTGTACGGAAGGTAGCCCAGGTACTACTCTCAAATAAA
TTGCAGCATTTAAAGCAACAGTTAACAAAGTAACAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014510XLOC_014510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025818-exon-sc0000547-1491911889:212521..212758TCONS_00025818-exon-sc0000547-1491911889:212521..212758Clytia hemisphaericaexon
TCONS_00025818-exon-sc0000547-1510915933:212521..212758TCONS_00025818-exon-sc0000547-1510915933:212521..212758Clytia hemisphaericaexon
TCONS_00025818-exon-sc0000547-1575043694:212521..212758TCONS_00025818-exon-sc0000547-1575043694:212521..212758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:212521..212758 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.2218	17.2101	35.7583	44.2444	7.51581	9.89849	15.5247	19.0061	7.82742	13.5737	7.52857	4.94898	14.8263	13.4726	10.5489	15.8488	2.0919	10.7207	0.987411	6.19952	2.69426	5.25665	29.8207	19.3653	4.98644	8.90055	19.105	13.5929	18.5575	9.4536
Blast
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BLAST of TCONS_00025818 vs. Swiss-Prot (Human)
Match: RHBL4 (Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.258e-17
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 2 
Query:    2 PVTLLTVALNAAIYLRVVPGLPSVHSACTSNNFVLKKKEWKRLFLSSFYHLDDMHLYFNMVSFIWKGMKLEQDLGRR 232
            PVTL T+ALN  I+  + P  P ++S+C S     ++K+W+RL LS  +H DD HLYFNM S +WKG+ LE+ LG R
Sbjct:   29 PVTLATLALN--IWFFLNPQKP-LYSSCLSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSR 102
The following BLAST results are available for this feature:
BLAST of TCONS_00025818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHBL43.258e-1749.35Rhomboid-related protein 4 OS=Homo sapiens GN=RHBD... [more]
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