TCONS_00025814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025814
Unique NameTCONS_00025814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025814 ID=TCONS_00025814|Name=TCONS_00025814|organism=Clytia hemisphaerica|type=transcript|length=543bp
TGACGATCTTCTGGTTGTTTCAGCTCCATGAATATTGGGCGAATAGTGGT
TTTTTGACACTGCTGCTCCTTGTTGAGTCATCGATGATGAAGCAGCGTTG
CTGGAGAATCTTCTAGTGCTATCCACCGTTGATTtgatagtttgtctaac
agggCTGTTTTGCTTTCTTGAAATACTAACCCTTCTTTTTGATATGGTAC
CTTGTCTGGTCTCTACATTATCCGATTTGGAAGATGGATCAAAAGATCTT
TCTTCATTTAATGTTGATGAACTTCTGGACGGTTTCAAGGATTTCCGCTC
TAGAGAGATTGATTTTCTTTGGACAGTGTGGTAGGTTGAAGTGATTTTAG
ACACTTCACTTGATGACTGAAAGGTTTGCCTGGAGTCAGTGTAGAGCGAA
CTTTTATCATTATCCTGCTTAATTTGCCTGTTCGTTGATTGATCTGAAGA
TTTCAAGTGTTCTTTATCGTCGTTCGATGATGATGGCCGTTTAACAACAA
TTCTGGGGCAAGGAGTGTTATAAGTAGCGAGTGAATAACCGAG
Run BLAST on NCBI

protein sequence of TCONS_00025814-protein

>TCONS_00025814-protein ID=TCONS_00025814-protein|Name=TCONS_00025814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
LGYSLATYNTPCPRIVVKRPSSSNDDKEHLKSSDQSTNRQIKQDNDKSSL
YTDSRQTFQSSSEVSKITSTYHTVQRKSISLERKSLKPSRSSSTLNEERS
FDPSSKSDNVETRQGTISKRRVSISRKQNSPVRQTIKSTVDSTRRFSSNA
ASSSMTQQGAAVSKNHYSPNIHGAETTRRSS
Run BLAST on NCBI

transcript from alignment at sc0000547:174172..174714

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025814 ID=TCONS_00025814|Name=TCONS_00025814|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at sc0000547:174172..174714 (Clytia hemisphaerica)
CTCGGTTATTCACTCGCTACTTATAACACTCCTTGCCCCAGAATTGTTGT
TAAACGGCCATCATCATCGAACGACGATAAAGAACACTTGAAATCTTCAG
ATCAATCAACGAACAGGCAAATTAAGCAGGATAATGATAAAAGTTCGCTC
TACACTGACTCCAGGCAAACCTTTCAGTCATCAAGTGAAGTGTCTAAAAT
CACTTCAACCTACCACACTGTCCAAAGAAAATCAATCTCTCTAGAGCGGA
AATCCTTGAAACCGTCCAGAAGTTCATCAACATTAAATGAAGAAAGATCT
TTTGATCCATCTTCCAAATCGGATAATGTAGAGACCAGACAAGGTACCAT
ATCAAAAAGAAGGGTTAGTATTTCAAGAAAGCAAAACAGccctgttagac
aaactatcaAATCAACGGTGGATAGCACTAGAAGATTCTCCAGCAACGCT
GCTTCATCATCGATGACTCAACAAGGAGCAGCAGTGTCAAAAAACCACTA
TTCGCCCAATATTCATGGAGCTGAAACAACCAGAAGATCGTCA

Coding sequence (CDS) from alignment at sc0000547:174172..174714

>TCONS_00025814 ID=TCONS_00025814|Name=TCONS_00025814|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000547:174172..174714 (Clytia hemisphaerica)
CTCGGTTATTCACTCGCTACTTATAACACTCCTTGCCCCAGAATTGTTGT
TAAACGGCCATCATCATCGAACGACGATAAAGAACACTTGAAATCTTCAG
ATCAATCAACGAACAGGCAAATTAAGCAGGATAATGATAAAAGTTCGCTC
TACACTGACTCCAGGCAAACCTTTCAGTCATCAAGTGAAGTGTCTAAAAT
CACTTCAACCTACCACACTGTCCAAAGAAAATCAATCTCTCTAGAGCGGA
AATCCTTGAAACCGTCCAGAAGTTCATCAACATTAAATGAAGAAAGATCT
TTTGATCCATCTTCCAAATCGGATAATGTAGAGACCAGACAAGGTACCAT
ATCAAAAAGAAGGGTTAGTATTTCAAGAAAGCAAAACAGccctgttagac
aaactatcaAATCAACGGTGGATAGCACTAGAAGATTCTCCAGCAACGCT
GCTTCATCATCGATGACTCAACAAGGAGCAGCAGTGTCAAAAAACCACTA
TTCGCCCAATATTCATGGAGCTGAAACAACCAGAAGATCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014506XLOC_014506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025814-exon-sc0000547-1491911889:174172..174714TCONS_00025814-exon-sc0000547-1491911889:174172..174714Clytia hemisphaericaexon
TCONS_00025814-exon-sc0000547-1510915933:174172..174714TCONS_00025814-exon-sc0000547-1510915933:174172..174714Clytia hemisphaericaexon
TCONS_00025814-exon-sc0000547-1575043694:174172..174714TCONS_00025814-exon-sc0000547-1575043694:174172..174714Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025814-proteinTCONS_00025814-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:174172..174714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.103582	0	0	0	0	0	0	0	0.158742	1.08953	0	0.349634	0	0.142693	0.76117	0	0	1.27633	1.0764	0.218417	0.240728	0	0.444773	1.6513	1.55887	0.244449	0	0.490131	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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