TCONS_00025811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025811
Unique NameTCONS_00025811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025811 ID=TCONS_00025811|Name=TCONS_00025811|organism=Clytia hemisphaerica|type=transcript|length=260bp
NNCCCATTCTACAAGTTTATGTCTGGAGCGAAGGAGATATGAGTTTTAAT
TAAGTTTTCAAGCCACTGATCTGAATGGTAAAGTCTGTCATTCTGAAGCG
TAAAGTAACAATACTCTGTCCATTGGAAATCCAAAAGAGTTCAATTTAAT
TTACCGACTGCAACAATATTTCTTCGAGCAAAGGCTTCAATTAAAAGTCT
TGAAGGTACAGTAGAATGATTCCATGGTTGCGTTGTTTGTGACTGAATTT
TGTTTCCATT
Run BLAST on NCBI

transcript from alignment at sc0000547:72147..72406

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025811 ID=TCONS_00025811|Name=TCONS_00025811|organism=Clytia hemisphaerica|type=transcript|length=260bp|location=Sequence derived from alignment at sc0000547:72147..72406 (Clytia hemisphaerica)
AATGGAAACAAAATTCAGTCACAAACAACGCAACCATGGAATCATTCTAC
TGTACCTTCAAGACTTTTAATTGAAGCCTTTGCTCGAAGAAATATTGTTG
CAGTCGGTAAATTAAATTGAACTCTTTTGGATTTCCAATGGACAGAGTAT
TGTTACTTTACGCTTCAGAATGACAGACTTTACCATTCAGATCAGTGGCT
TGAAAACTTAATTAAAACTCATATCTCCTTCGCTCCAGACATAAACTTGT
AGAATGGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014503XLOC_014503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025811-exon-sc0000547-1491911889:72147..72406TCONS_00025811-exon-sc0000547-1491911889:72147..72406Clytia hemisphaericaexon
TCONS_00025811-exon-sc0000547-1510915933:72147..72406TCONS_00025811-exon-sc0000547-1510915933:72147..72406Clytia hemisphaericaexon
TCONS_00025811-exon-sc0000547-1575043694:72147..72406TCONS_00025811-exon-sc0000547-1575043694:72147..72406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:72147..72406 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15814	1.70764	0	0	0	0	18.7556	9.28615	11.42	24.6283	37.1026	31.3108	26.4149	29.8903	4.77924	4.89566	2.48187	4.75072	81.798	65.0822	7.91134	4.23804	7.67968	5.11758	0	3.85937	45.9174	32.0176	10.9168	10.1704
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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