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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025792 ID=TCONS_00025792|Name=TCONS_00025792|organism=Clytia hemisphaerica|type=transcript|length=8283bp protein sequence of TCONS_00025792-protein >TCONS_00025792-protein ID=TCONS_00025792-protein|Name=TCONS_00025792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1401bp MCLSTDGTFKQPFWVTVTSKDHMQEKGVVLVQPCDEWNDFKGAEFMIYLMRun BLAST on NCBI transcript from alignment at sc0000547:169660..190437+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025792 ID=TCONS_00025792|Name=TCONS_00025792|organism=Clytia hemisphaerica|type=transcript|length=20778bp|location=Sequence derived from alignment at sc0000547:169660..190437+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000547:169660..190437+ >TCONS_00025792 ID=TCONS_00025792|Name=TCONS_00025792|organism=Clytia hemisphaerica|type=CDS|length=33624bp|location=Sequence derived from alignment at sc0000547:169660..190437+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025792 vs. Swiss-Prot (Human)
Match: ZNFX1 (NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=2 SV=2) HSP 1 Score: 259.996 bits (663), Expect = 3.510e-69 Identity = 190/605 (31.40%), Postives = 287/605 (47.44%), Query Frame = 1
Query: 5866 DEQEDVWQLSMPDRIRLVQLLIAKGTNEMLEKFQRSLREFKDECKQKAELETQNEVEILKRKQIIAATVTGASINQELLREIKPQXXXXXXXXXXLEPQLVASIGSWTKYMLLIGDHQQLRPSVDAYHLRKDYNFDISMMERLINNQMPYTTLQMQNRQRVEFAELLLD-IYPNLKTNHKRISGHKPATCLEKSVFFWDH---QHEETKERSVRNEEEAKRAVDLGLFLVQQGYEPRKITILAMYRGQTKLIRDMIREHVKIYSQLFSCDTRMNKLQTAMTTHADNRKSTTILESKQKQKAKEKPDEPNVIKIHTVDMYQGDENDFVIVSLVRSNRERNIGFLSERNRRCVAQSRARCGVYFIGNSSMFKEHKTWRPLISKLESDGCLGDKIGLVCKDHPEASFKV-KDSKLMALPKLKNFCQQPCGREMDCGKHFCKEGCQVPHTHSK------SACKELVLFEDERCQLHHEPYQRPCCSLRNFCKKLVPFTFEKCGHDAFKECYKKAAWLECETPVLHAMVCGHVQSKQCHED--------------------------------GSKIKCKEKCQRKMSCGHICSGG-HKCFEHSNKKSCR 7548
+E EDVWQL + R +L +L + + K R+++ ++ AEL Q ++ ILK Q++ T TGA+ +++L++++P+IVIVEEAAEVLE +A++ ++++LIGDHQQLRPS + Y L K++N ++S+ ERL+ +P+ L Q+R E A LL IY +L+ NH + ++ + ++FF +H + E + +S +N+ EA V+L + + Q Y P +ITIL Y GQ +R KL A T +++H VD YQG+END +++SLVRSN+E +GFL NR CVA SRA+ G+Y IGN M + W +I L + +G + L C++HPE V K S +P + C PC + CG H C C P+ S C++++ E RC L C C+ VP T +CGH+ C + C+ P ++ CGH S C ED G +KC KC + CGH C G H CFE + C+
Sbjct: 917 NEIEDVWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLE-NHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLR---------------------KLMPAKTFAG--------------------------VRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVP--EGGCSLPCEFRLGCG-HVCTRACH-PYDSSHKEFQCMKPCQKVICQEGHRCPL-------VCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSLRCGHRCSHPCGEDCVQLCSEMVTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQ 1462 The following BLAST results are available for this feature:
BLAST of TCONS_00025792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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