TCONS_00025779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025779
Unique NameTCONS_00025779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025779 ID=TCONS_00025779|Name=TCONS_00025779|organism=Clytia hemisphaerica|type=transcript|length=2837bp
AGCAGGTTGAATTAGAGCTAAAGTAATTTGTATTCTATTTTCATAGAAAA
TATGAGGAGAATAATGAATTTGAGCATTCAATTTTATATTATTTGGTATG
TTTGCTTATGTCAAATACTACTTTTCAGGGGATGCCAGCCGTTCCTTTAC
AACCAGCAGACAAGATGTTTTTGTGAATTACGTCGAGGTGTTCATGATAA
CTCTGTTCAACTTCACCAAATGGAAGACATCGTTATCAATCACTGGCATA
GAGGCTGCAAGTCAGCATATAGACTGTGTCCATCAAAATGTTGGAGGAAA
GGCTATAGAGTTTTACAAAACTATCATAAAATGAATTCCATGTGTAAACC
GTATGGAAAAGTCACTTGGCCGGGTATGCCCGTTATTGGGCGTGTCCGAA
TACCGAGTTGTGGAATTCAACGGACTTTTGATTACGGAAGACGTTTATGT
TGTTGGAAAGGAGAGTATCCACTGCTTGGCAAAAAACGTACAATTCGAAT
ATATTTTGGTTATTACTGCTAGTAATTTCCTGATGAATAGACGGTTCCAC
CTTCACTGGAAGGAAAATGAGGGGTCTTTCAAACACTCTGATAAAAGAGA
GAGAATGGgaggtaaaaataaaaactctcTAAATTGAAGCTTTACTGTTG
ATTACATTTCTTTCAGACAAGAAGATTTTTCCTAGCCTTTTATTGAGGTA
TAAGTAGAAGAAGACAGTGAGTTTCCTAGTGCTGAAAAAGACATCTCTAT
CTTTAGAAAGTTTGATGAGTTGTTtgcaattacacgctttttctatttat
aagaatagtgtactttggcattataatcatttttctattgttctaaacaa
tagacTTACTGTTATAaccccgaaatctcaccctgatattcttatagaag
ttattcttatataaaaagcgtgtatgagTATTTGAAGTTGTGATTACAAT
TTTACctaaaaaacttaaattttatttttcatataatttaaaaaagtaat
aaataaATTGTACAAAGTATTTGTGTGTAGAATAACAACTTtaggaaaat
ttaaaaccatacctttctttacaattttcaagcTTGTGTGTATATTTGGA
TCTAATACGTCCAATGATAATGCCATAAAATCGACAGAAAATAGATAGAA
ACTCGACCCTGAAGAAAACCAATCGAGCACTTGTTCACAACCTTTGTTTA
GGGTTTAGATCCCCATATGTGGTGAGTGGTGGATATATATTTTTACTCCG
ATGAGTCTAGAATAGGTTTTTTATTTCACAACGATACTTTATAAAACCAA
AGCTGTTTGACCATAATATCTTTGAATTTCACTGGAGTGAGATTCTTGTT
GTCCAACCCTTAGGTATACTgatgaaattcaaaacagagtcAAAGTCAAG
AAAACAATGGGTGGGCCTGATAAATAATATTCGTTGATatcaattttttg
ttgaaatcaaTATTTGAAACTCTTCGAAActcattagcgagtttatgtat
gtgtgtttttcagcgacggagacggtaaggttctaatttgactagatcct
gaccagctgaggacgacggtaaatcagcatttttaccgtcctcgatattg
cggggcggaattgcgggtttttccaaatcgcttcagtcactctaccgtcc
tcaaaagtgcaaatacataaactcggtatttaCTCATTTCCGGGGTCAGA
AGATTTTTGCCTGTACTCTTTGGGtcttcaaaactttttccagatgtttt
tttttagtttttaatggGGCAGAAGCATTATggatatatttaaaaagttt
tcagtaGAAAGACAAGAAAGATGGATGCCACTGAGACACGGGTGTTCCTC
CTATCGGTACCCCAGAGTAAGCCTCCTTAGTTAAGGTGCGAACAAAATAG
TTTTGGTCTCGTGTTTAAGGGAGTAAAATAAAGGTAATGGTGGGCTAAAA
GAAGGGTAAAATATTATAAGTAAAAGTGCAGCAATGTATACGAAATAACG
ATACAAAATTTTGTCATTCCATTTGATGGTAAGTGATAACATACCACAGA
GCTCTACGCGCCAATTGTAGAGGAGACGATGATGTTGGCAAAGCTGACAC
GTTGATGCTTATTATAATTACGTCATCATCATTTAAGAGGTCTTATTTTC
CAATTgtcttttcagaaatttgtGACATCTATCTGGCAAGACTTCAAAAG
AATACCATATATGTTTGCATCATTGCTAAATTTAAGATCCAGGTGTTTTA
TCAAACTTGGCTGACTTAACTCTTATGGAAATTAGATTCCCATATGTCTA
TGATAGGAAAAAGAAGCAGATAAGCTCTTTTCCTAAGGGAAAAGCATAAT
TATTTCTCATTCCCAATCCCAATGTTAACGTTTTCAGATGACCATAACCA
ACCATTTCCAATATATATGTGAGACAGAACAATCGCGCGTTTAAACACCG
GATTGAAAACATTCATCATTCATCAATCCAATAAATATCTCAATCTTTTA
CACCCATATATACAGTTCAATATGCGAGGACACCTGCTCAACAAGAGTTC
ATTCGAGGTTGTGCCCAGACCCCAACCATGTTTGAAGCGTTCGAGTTATT
ATGTTGTGATTTAGCGTTATTAGCTTTAACGAAACGATTGTGTGCGTATA
AATCACTTTCTCGTTGTTTTTCATACATGCTCAACTCCAAAGGGTTCTCA
GCAATACTGGTGGAGGGTTGGTGGCTCACAGTTCCTTTCCGCATGTTCTT
ACCGGCGAAACTGGATGAAAATGCTCGCACTGAGACGTTGCCATACGTTA
CATCAAATGATTTTCCGAAGAGCAgataaatctaaaa
Run BLAST on NCBI

protein sequence of TCONS_00025779-protein

>TCONS_00025779-protein ID=TCONS_00025779-protein|Name=TCONS_00025779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MRRIMNLSIQFYIIWYVCLCQILLFRGCQPFLYNQQTRCFCELRRGVHDN
SVQLHQMEDIVINHWHRGCKSAYRLCPSKCWRKGYRVLQNYHKMNSMCKP
YGKVTWPGMPVIGRVRIPSCGIQRTFDYGRRLCCWKGEYPLLGKKRTIRI
YFGYYC
Run BLAST on NCBI

transcript from alignment at sc0000547:77106..80316+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025779 ID=TCONS_00025779|Name=TCONS_00025779|organism=Clytia hemisphaerica|type=transcript|length=3211bp|location=Sequence derived from alignment at sc0000547:77106..80316+ (Clytia hemisphaerica)
AGCAGGTTGAATTAGAGCTAAAGTAATTTGTATTCTATTTTCATAGAAAA
TATGAGGAGAATAATGAATTTGAGCATTCAATTTTATATTATTTGGTATG
TTTGCTTATGTCAAATACTACTTTTCAGGTAAGATTCTCGTTACATGTTA
TATGGGATGTTATATCATACTACCATATATTTCCAGACCTCTATACTCCC
TAGATGATATGTCCAGTTCCTTGTTAGAGAACGAGTGTCTCGCGACAGGA
AGACTTGTGGAAATTAAttccaaatttttcttttacagGTAAATATACAC
CTCTATACAAGGTGGTTCCAGAAAATCTCTTTTTAAGTTTTGTAATTATA
GTAGAAGATCTAAAAAAGATCCTCCAGCCTTGTCGAATCAGACGTATTGC
TActtagttgatttttttttaattccagGGGATGCCAGCCGTTCCTTTAC
AACCAGCAGACAAGATGTTTTTGTGAATTACGTCGAGGTGTTCATGATAA
CTCTGTTCAACTTCACCAAATGGAAGACATCGTTATCAATCACTGGCATA
GAGGCTGCAAGTCAGCATATAGACTGTGTCCATCAAAATGTTGGAGGAAA
GGCTATAGAGTTTTACAAAACTATCATAAAATGAATTCCATGTGTAAACC
GTATGGAAAAGTCACTTGGCCGGGTATGCCCGTTATTGGGCGTGTCCGAA
TACCGAGTTGTGGAATTCAACGGACTTTTGATTACGGAAGACGTTTATGT
TGTTGGAAAGGAGAGTATCCACTGCTTGGCAAAAAACGTACAATTCGAAT
ATATTTTGGTTATTACTGCTAGTAATTTCCTGATGAATAGACGGTTCCAC
CTTCACTGGAAGGAAAATGAGGGGTCTTTCAAACACTCTGATAAAAGAGA
GAGAATGGgaggtaaaaataaaaactctcTAAATTGAAGCTTTACTGTTG
ATTACATTTCTTTCAGACAAGAAGATTTTTCCTAGCCTTTTATTGAGGTA
TAAGTAGAAGAAGACAGTGAGTTTCCTAGTGCTGAAAAAGACATCTCTAT
CTTTAGAAAGTTTGATGAGTTGTTtgcaattacacgctttttctatttat
aagaatagtgtactttggcattataatcatttttctattgttctaaacaa
tagacTTACTGTTATAaccccgaaatctcaccctgatattcttatagaag
ttattcttatataaaaagcgtgtatgagTATTTGAAGTTGTGATTACAAT
TTTACctaaaaaacttaaattttatttttcatataatttaaaaaagtaat
aaataaATTGTACAAAGTATTTGTGTGTAGAATAACAACTTtaggaaaat
ttaaaaccatacctttctttacaattttcaagcTTGTGTGTATATTTGGA
TCTAATACGTCCAATGATAATGCCATAAAATCGACAGAAAATAGATAGAA
ACTCGACCCTGAAGAAAACCAATCGAGCACTTGTTCACAACCTTTGTTTA
GGGTTTAGATCCCCATATGTGGTGAGTGGTGGATATATATTTTTACTCCG
ATGAGTCTAGAATAGGTTTTTTATTTCACAACGATACTTTATAAAACCAA
AGCTGTTTGACCATAATATCTTTGAATTTCACTGGAGTGAGATTCTTGTT
GTCCAACCCTTAGGTATACTgatgaaattcaaaacagagtcAAAGTCAAG
AAAACAATGGGTGGGCCTGATAAATAATATTCGTTGATatcaattttttg
ttgaaatcaaTATTTGAAACTCTTCGAAActcattagcgagtttatgtat
gtgtgtttttcagcgacggagacggtaaggttctaatttgactagatcct
gaccagctgaggacgacggtaaatcagcatttttaccgtcctcgatattg
cggggcggaattgcgggtttttccaaatcgcttcagtcactctaccgtcc
tcaaaagtgcaaatacataaactcggtatttaCTCATTTCCGGGGTCAGA
AGATTTTTGCCTGTACTCTTTGGGtcttcaaaactttttccagatgtttt
tttttagtttttaatggGGCAGAAGCATTATggatatatttaaaaagttt
tcagtaGAAAGACAAGAAAGATGGATGCCACTGAGACACGGGTGTTCCTC
CTATCGGTACCCCAGAGTAAGCCTCCTTAGTTAAGGTGCGAACAAAATAG
TTTTGGTCTCGTGTTTAAGGGAGTAAAATAAAGGTAATGGTGGGCTAAAA
GAAGGGTAAAATATTATAAGTAAAAGTGCAGCAATGTATACGAAATAACG
ATACAAAATTTTGTCATTCCATTTGATGGTAAGTGATAACATACCACAGA
GCTCTACGCGCCAATTGTAGAGGAGACGATGATGTTGGCAAAGCTGACAC
GTTGATGCTTATTATAATTACGTCATCATCATTTAAGAGGTCTTATTTTC
CAATTgtcttttcagaaatttgtGACATCTATCTGGCAAGACTTCAAAAG
AATACCATATATGTTTGCATCATTGCTAAATTTAAGATCCAGGTGTTTTA
TCAAACTTGGCTGACTTAACTCTTATGGAAATTAGATTCCCATATGTCTA
TGATAGGAAAAAGAAGCAGATAAGCTCTTTTCCTAAGGGAAAAGCATAAT
TATTTCTCATTCCCAATCCCAATGTTAACGTTTTCAGATGACCATAACCA
ACCATTTCCAATATATATGTGAGACAGAACAATCGCGCGTTTAAACACCG
GATTGAAAACATCCATCATTATTCAATCAAATAAATATCTCAATCTTTTA
CACCCNTAATCGCGCGTTTCACCGGATTGAAAACATTCATCATTCATCAA
TCCAATAAATATCTCAATCTTTTACACCCATATATACAGTTCAATATGCG
AGGACACCTGCTCAACAAGAGTTCATTCGAGGTTGTGCCCAGACCCCAAC
CATGTTTGAAGCGTTCGAGTTATTATGTTGTGATTTAGCGTTATTAGCTT
TAACGAAACGATTGTGTGCGTATAAATCACTTTCTCGTTGTTTTTCATAC
ATGCTCAACTCCAAAGGGTTCTCAGCAATACTGGTGGAGGGTTGGTGGCT
CACAGTTCCTTTCCGCATGTTCTTACCGGCGAAACTGGATGAAAATGCTC
GCACTGAGACGTTGCCATACGTTACATCAAATGATTTTCCGAAGAGCAga
taaatctaaaa

Coding sequence (CDS) from alignment at sc0000547:77106..80316+

>TCONS_00025779 ID=TCONS_00025779|Name=TCONS_00025779|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000547:77106..80316+ (Clytia hemisphaerica)
ATGAGGAGAATAATGAATTTGAGCATTCAATTTTATATTATTTGGTATGT
TTGCTTATGTCAAATACTACTTTTCAGGGGATGCCAGCCGTTCCTTTACA
ACCAGCAGACAAGATGTTTTTGTGAATTACGTCGAGGTGTTCATGATAAC
TCTGTTCAACTTCACCAAATGGAAGACATCGTTATCAATCACTGGCATAG
AGGCTGCAAGTCAGCATATAGACTGTGTCCATCAAAATGTTGGAGGAAAG
GCTATAGAGTTTTACAAAACTATCATAAAATGAATTCCATGTGTAAACCG
TATGGAAAAGTCACTTGGCCGGGTATGCCCGTTATTGGGCGTGTCCGAAT
ACCGAGTTGTGGAATTCAACGGACTTTTGATTACGGAAGACGTTTATGTT
GTTGGAAAGGAGAGTATCCACTGCTTGGCAAAAAACGTACAATTCGAATA
TATTTTGGTTATTACTGCTAGATGAGGAGAATAATGAATTTGAGCATTCA
ATTTTATATTATTTGGTATGTTTGCTTATGTCAAATACTACTTTTCAGGG
GATGCCAGCCGTTCCTTTACAACCAGCAGACAAGATGTTTTTGTGAATTA
CGTCGAGGTGTTCATGATAACTCTGTTCAACTTCACCAAATGGAAGACAT
CGTTATCAATCACTGGCATAGAGGCTGCAAGTCAGCATATAGACTGTGTC
CATCAAAATGTTGGAGGAAAGGCTATAGAGTTTTACAAAACTATCATAAA
ATGAATTCCATGTGTAAACCGTATGGAAAAGTCACTTGGCCGGGTATGCC
CGTTATTGGGCGTGTCCGAATACCGAGTTGTGGAATTCAACGGACTTTTG
ATTACGGAAGACGTTTATGTTGTTGGAAAGGAGAGTATCCACTGCTTGGC
AAAAAACGTACAATTCGAATATATTTTGGTTATTACTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014485XLOC_014485Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025779-proteinTCONS_00025779-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025779-exon-sc0000547-1491911889:77106..77233TCONS_00025779-exon-sc0000547-1491911889:77106..77233Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1510915933:77106..77233TCONS_00025779-exon-sc0000547-1510915933:77106..77233Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1575043694:77106..77233TCONS_00025779-exon-sc0000547-1575043694:77106..77233Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1491911889:77534..79865TCONS_00025779-exon-sc0000547-1491911889:77534..79865Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1510915933:77534..79865TCONS_00025779-exon-sc0000547-1510915933:77534..79865Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1575043694:77534..79865TCONS_00025779-exon-sc0000547-1575043694:77534..79865Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1491911889:79940..80316TCONS_00025779-exon-sc0000547-1491911889:79940..80316Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1510915933:79940..80316TCONS_00025779-exon-sc0000547-1510915933:79940..80316Clytia hemisphaericaexon
TCONS_00025779-exon-sc0000547-1575043694:79940..80316TCONS_00025779-exon-sc0000547-1575043694:79940..80316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000547supercontigsc0000547:77106..80316 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134543	0.14032	0	0.336748	0	0.182339	0.0414349	0	0.0442968	0.0263859	0	0.037449	0.0202661	0	0.0322194	0.102812	0.77822	0.0282088	0.324008	0.160312	0.287445	0.57969	1.04831	0.949388	1.72144	0.486916	1.13315	0.80633	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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