TCONS_00025762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025762
Unique NameTCONS_00025762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025762 ID=TCONS_00025762|Name=TCONS_00025762|organism=Clytia hemisphaerica|type=transcript|length=562bp
AAGGACGTCTTGATAAAACTTCACAAACCAACATTAGCAATCGATAAGAT
TCAAAGCATCCACTTTGGTAAAGAAGAAAGTAATGATTTGGAAATCGAAT
ATGAAGACTTGCAAGGGATCGATTACAAAGTTTCGTTGGTTAAAGATGAT
ATATTGATTGAAATCACCAAAGAACTCCTTCCAGATTATGTTTACCATTT
CTTGGTTAGAACAAAACAGTTGGATGGAACTGACGAAGATTTTGATATCA
AGTTTAAAGCTAAAGACGAGGGTGTCAGTCAAACAATTTCAAGAAAGCAG
GACATTCTAATTTGGGCATGTAACAATGGCCTCCCTGAAAATATCCACCA
TTTCAAACCATTGATGCCTATCAAAGACAATCAAGAATGCAAGCCCTTAC
GAGCCGGTCCACAGATTGCCAAAACTGTTGGAGAATTCAGAACTAGAGCA
AGGAAATATTATACCGACCATGAAAACTTAATGAGATTCCCTCCATCTCA
TTATCTGGAAAATAACGTTGTTAGCCAGCTTGCAGCAAGATTCGAGAAGC
ACCGAAGCTTTC
Run BLAST on NCBI

protein sequence of TCONS_00025762-protein

>TCONS_00025762-protein ID=TCONS_00025762-protein|Name=TCONS_00025762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
KDVLIKLHKPTLAIDKIQSIHFGKEESNDLEIEYEDLQGIDYKVSLVKDD
ILIEITKELLPDYVYHFLVRTKQLDGTDEDFDIKFKAKDEGVSQTISRKQ
DILIWACNNGLPENIHHFKPLMPIKDNQECKPLRAGPQIAKTVGEFRTRA
RKYYTDHENLMRFPPSHYLENNVVSQLAARFEKHRSF
Run BLAST on NCBI

transcript from alignment at sc0000545:176890..180143-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025762 ID=TCONS_00025762|Name=TCONS_00025762|organism=Clytia hemisphaerica|type=transcript|length=3254bp|location=Sequence derived from alignment at sc0000545:176890..180143- (Clytia hemisphaerica)
AAGGACGTCTTGATAAAACTTCACAAACCAACATTAGCAATCGATAAGAT
TCAAAGCATCCACTTTGGTAAAGAAGAAAGTAATGATTTGGAAATCGAAT
ATGAAGACTTGCAAGGGATCGATTACAAAGTTTCGTTGGTTAAAGATGAT
ATATTGATTGAAATCACCAAAGAACTCCTTCCAGATTATGTTTACCATTT
CTTGGTTAGAACAAAACAGTTGGATGGAACTGACGAAGATTTTGATATCA
AGTTTAAAGCTAAAGGTATCCATACTGAGAAAGTTCTATGATTTCGCTAA
AGTTTTCAGCTTATTCACTATTGTTTTTATACCTTTTTTATCACTCCTTT
GTTGCACAAAGTGCTGACCACTTTTAATATATAAATCATGCCTTGAATAC
TTTTCTATCAAATTGCAATTTGCTGATGACGTTATCGTATGCTTTTCCAG
GCAAAATGAAAAAATGCAATGAAATCTGATCCAGTTGACGAAAATCTAAG
TCAGCTCACTTCAAGACGACGTTTCGCATCAGGATTCGACGCTCTATAGT
TGATGGTGATGATGAATCTGTCATTTCCAGTTTGACCTAAGTTTGGCCTA
AGGAAAATTGGTAGTTTCCCTAGGGCCAAAACAGAAAATCTTTTTTCGCA
AGTTTTCTGACAACTTAAGGCTTCTTGAATATTTCCATAAAAAAGAATAC
AAAATTCTGATGCTAAAACATGTATGGGACATTTCGTCAGCTTTCGTCAA
CGTGTTTCAGATTACACGACATTTTTGGCCCAGCTAGCTTTAGCGTACTG
GGCCTTTCATTAGCATTCTGCCCGGTGTCAGTGTGTAACAATTTACTAGG
CGATACGCGTTTTCATATATGGCGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAAACTTAATGAGATTCCCTCCATCTCATTA
TCTGGAAAATAACGTTGTTAGCCAGCTTGCAGCAAGATTCGAGAAGCACC
GAAGCTTTCAAAATCAAGATATCAAAATATTAACGCCCTACCACCCTGTA
AATCACCTCAAACTAATGGGCGTTGATATGAAACAATGTTATGATGACAT
TATGACTTCGAGGTGCGATTCATTTGAGAATGTGGTGATCACTATCATCC
CTGGTGATTGTCAAGTATTGGTCAGTGTTGTCGTCGAGCAAACAGATGAC
CATTCCATACAAGAAAGCGTGGCACAGTTGAATGACATTCTGAAGACCAT
TTACCACGTCAGCAGTGATCCAATGAAAAATGGCTTCATCTCAATCACTG
GTTTACTGGTGTGTCCCAACATTGACCAAAACAAATTCAACGCAACTGCA
TGCTTCAGTAAGGATTACCTGAAATCGGAATTGTTTTTTCTCAAAGACGA
CTGGGATAACAATGATTCGTTTAAACGGAAACTCGAGAAGATCCTCCACA
ATATGAGTAAAGAAATGAAGCAGATTCGNAAATATTATGAATTGTTTCTT
ATTGTTGTAAGTAAGAAATAGCCGAATGGTCTAAGGCGTCTATGGCTTGT
ATTAGCGACTCCAGGTTCAAATCCCCTCTGCTACTCAAGTCTTGTTCAGT
TCATACTTTTATTCGCTNAATTGTTTTTTCTCAAAGACGACTGGGATAAC
AATGATTCGTTTAAACGGAAACTCGAGAAGATCCTCCACAATATGAGTAA
AGAAATGAAGCAGATTCGACCAGTCAAATTCAAATCCATGGAAAGCGTAC
TGGAGGGATTTTGCGGAGAGCTGATGGCTTCCATGGCACAAACGACGCTC
TATTTGCCGAAAGTGACGGATGACGTGACCACCAAAATAGACACCGTTCT
ATTGACAGGTGAGCAGATTGATATTATTAACAGCCCTGCCAACTGGAAAG
TTATCAAAGGTCCATTTGGGAGTGGAAAATCAATCATACTTCATGAGGTA
GTTCGAAAACTCCTCAAAGAAGAAAGTCAAAGCTCAATTTATTACATCAG
CTTTGATCCTTACTCGCTTGTCGACGTTAAATTTCAAGAATCTTTTGACT
CTCTTTGTATCGAGGAGAATATGNTGCCTAAGAAGACTTACAATGACGTC
ATCAGCAAATTACAAACCCTTATTAACTTCTGGCAAAATATATAAAAATG
ACCAGAAGGTGCTCCTCCCGTAAGGCCAAAGCATTATCGATGATCCCAAA
AATAACCTTTTGTTGTTAAGCCAACCAAAACGTCATTTCACCGATTACCT
TGATAACTTCAAAACTTCAACTTCAAAAAACTCATTCAAAATTCCATGAC
GAGAGTTTGTGCATAATTGTGAAGTTTCGTTACGTTAATAAGTGCTAACT
CGCCCCACTATTGAAAGCCCAAACTTTTGAAAGTGAATTCTTGTTCCATT
TTTCCAGACGAGGGTGTCAGTCAAACAATTTCAAGAAAGCAGGACATTCT
AATTTGGGCATGTAACAATGGCCTCCCTGAAAATATCCACCATTTCAAAC
CATTGATGCCTATCAAAGACAATCAAGAATGCAAGCCCTTACGAGCCGGT
CCACAGATTGCCAAAACTGTTGGAGAATTCAGAACTAGAGCAAGGAAATA
TTATACCGACCATGAAAACTTAATGAGATTCCCTCCATCTCATTATCTGG
AAAATAACGTTGTTAGCCAGCTTGCAGCAAGATTCGAGAAGCACCGAAGC
TTTC

Coding sequence (CDS) from alignment at sc0000545:176890..180143-

>TCONS_00025762 ID=TCONS_00025762|Name=TCONS_00025762|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000545:176890..180143- (Clytia hemisphaerica)
ACGAGGGTGTCAGTCAAACAATTTCAAGAAAGCAGGACATTCTAATTTGG
GCATGTAACAATGGCCTCCCTGAAAATATCCACCATTTCAAACCATTGAT
GCCTATCAAAGACAATCAAGAATGCAAGCCCTTACGAGCCGGTCCACAGA
TTGCCAAAACTGTTGGAGAATTCAGAACTAGAGCAAGGAAATATTATACC
GACCATGAAAACTTAATGAGATTCCCTCCATCTCATTATCTGGAAAATAA
CGTTGTTAGCCAGCTTGCAGCAAGATTCGAGAAGCACCGAAGCTTTAAGG
ACGTCTTGATAAAACTTCACAAACCAACATTAGCAATCGATAAGATTCAA
AGCATCCACTTTGGTAAAGAAGAAAGTAATGATTTGGAAATCGAATATGA
AGACTTGCAAGGGATCGATTACAAAGTTTCGTTGGTTAAAGATGATATAT
TGATTGAAATCACCAAAGAACTCCTTCCAGATTATGTTTACCATTTCTTG
GTTAGAACAAAACAGTTGGATGGAACTGACGAAGATTTTGATATCAAGTT
TAAAGCTAAAGACGAGGGTGTCAGTCAAACAATTTCAAGAAAGCAGGACA
TTCTAATTTGGGCATGTAACAATGGCCTCCCTGAAAATATCCACCATTTC
AAACCATTGATGCCTATCAAAGACAATCAAGAATGCAAGCCCTTACGAGC
CGGTCCACAGATTGCCAAAACTGTTGGAGAATTCAGAACTAGAGCAAGGA
AATATTATACCGACCATGAAAACTTAATGAGATTCCCTCCATCTCATTAT
CTGGAAAATAACGTTGTTAGCCAGCTTGCAGCAAGATTCGAGAAGCACCG
AAGCTTTAAGGACGTCTTGATAAAACTTCACAAACCAACATTAGCAATCG
ATAAGATTCAAAGCATCCACTTTGGTAAAGAAGAAAGTAATGATTTGGAA
ATCGAATATGAAGACTTGCAAGGGATCGATTACAAAGTTTCGTTGGTTAA
AGATGATATATTGATTGAAATCACCAAAGAACTCCTTCCAGATTATGTTT
ACCATTTCTTGGTTAGAACAAAACAGTTGGATGGAACTGACGAAGATTTT
GATATCAAGTTTAAAGCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014468XLOC_014468Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025762-proteinTCONS_00025762-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025762-exon-sc0000545-1575043694:179879..180143TCONS_00025762-exon-sc0000545-1575043694:179879..180143Clytia hemisphaericaexon
TCONS_00025762-exon-sc0000545-1575043694:176890..177186TCONS_00025762-exon-sc0000545-1575043694:176890..177186Clytia hemisphaericaexon
TCONS_00025762-exon-sc0000545-1510915933:179879..180143TCONS_00025762-exon-sc0000545-1510915933:179879..180143Clytia hemisphaericaexon
TCONS_00025762-exon-sc0000545-1510915933:176890..177186TCONS_00025762-exon-sc0000545-1510915933:176890..177186Clytia hemisphaericaexon
TCONS_00025762-exon-sc0000545-1491911889:179879..180143TCONS_00025762-exon-sc0000545-1491911889:179879..180143Clytia hemisphaericaexon
TCONS_00025762-exon-sc0000545-1491911889:176890..177186TCONS_00025762-exon-sc0000545-1491911889:176890..177186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:176890..180143 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100504	0.0980068	0	0.222662	0	0.107101	0	0.120968	0	0	0	0.0669348	1.06947	0.416495	0.7419	1.46986	0.829924	0.927976	0.534187	2.01236	1.0689	0.71096	0	0.838125	1.07906	0.288911	0.13781	0.735374	3.56963	2.72767
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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