TCONS_00025760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025760
Unique NameTCONS_00025760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025760 ID=TCONS_00025760|Name=TCONS_00025760|organism=Clytia hemisphaerica|type=transcript|length=446bp
GtgattctcaataaattttatATGAGACATTAACGATGAAAGTTCACCTC
CTTTAATTCATTTCAATGTTTTAAATTGACGGATTGACGCTACTCGAAAC
ATGACTGACTTACGTGACTATTGGTATGACTGTAGACTGACAATTACACG
GTTACACTAAAACACTATTTGAAACATGACAACATCTGGAAATCACTCCT
CCTGCAAAAGTAAAGAAATTGATGCCGGTCGACTTATACACTAAACCGAG
ACTGAAAAAGTGCAAAGAATGCGGCGTTTCTGCTAAATCAAATAATTCAA
AGGTTTGTACCAATGGCCACCCGTTCACGAGAAAGAAAAAGCCGCCAATC
GAGTGCGTGCCAGCGGGCATGACCCAGGTCACCGATGTCAGGCATAATTG
GGAgacaaatgtaatttttttttcataattaaaaTTTCCATTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000545:101321..103275-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025760 ID=TCONS_00025760|Name=TCONS_00025760|organism=Clytia hemisphaerica|type=transcript|length=1955bp|location=Sequence derived from alignment at sc0000545:101321..103275- (Clytia hemisphaerica)
GGTAAGGCATGAGCTCAGTGAGCTTAATTTGTCAATCCTTTTACTTTACA
AAAACTTTTGCTTTCAGAAAATTTAACGAATCAGATCATTTGCGAAGTTG
AGTGTTTTATTAATTAATGGAATCTAAATTCGCAAATCAGCCAAATTTGT
TCAGGAAGTTGATTCTCGCTAAGTTGGATTCCCTATGCAAAAATGAAAAT
ACCTAAGGTAAAAGCATCTAATGTGCATTCCCTATATTCACGATTTCGTG
AATGTAGGGAATGTATTCGCGTAAATCGCGAAATTTTCTGGACTCAAAAT
TCTGTGACATTTAAACCAGAGATTTGAAAAAGGGATGTAAGAAAGGAGTT
TATTCTCAACTTCAAGAGCTCAAGAGCTAGAATCTCACAATGTCTGTTTG
TCTCAAACAACGACAGCTACAAAAGGTACAATGTTTTGAATAGAAAGCTA
TTACTCCCATAAGAGAAATGACAAAAGAAACACTTCATCTTTAATTTTGA
GTACCTTCTGTCGCTTCTGTAAACGCCATTGAGAAAAACATTCAAAAATT
GTCGAATTTTCCTAAAATTTGGTACACTTGTACTTTGGGTGAATGTCTAT
GGGAATTCATATTTCAGTTTTTTAAATTTTGGTTTTTAGGGTCTGGGACG
AGTTTTTCCTCAAAACGAGGCTAAAAATTTTGAACTGAACTGACTACTCA
CTTGAATCGAAGTAAAAAAATTTATTGTCATGAAATGGATCATAAAAAGA
CATTGGGCTATTCCATTACCCTAAACAATGTAATATTGTATTATTGAGGA
AGAAAATATCTGTCTGCTGAGAGGAAAAAGAAAAACTTTTACCTTTTTTC
GGCGCACTCTAGAATACTTTGGCAAGAAGATTTTATGAATGCTTAAGAAG
TCGTTGTTATAATTATTTCTCAATCAAAGGTTTCAAAGAAGCATAGTGTT
TCATAGCCTCTTGAACAAAATGAGTTGAAAAGGCGATTCGTATCTCCATT
TTTCAAATTTCTGAAAGTATCCACTTCTTTTGTCTACGCACATTTTTTTT
TCAGTGATTCTCAATAAATTTTATATGAGACATTAACGATGAAAGTTCAC
CTCCTTTAATTCATTTCAATGTTTTAAATTGACGGATTGACGCTACTCGA
AACATGACTGACTTACGTGACTATTGGTATGACTGTAGACTGACAATTAC
ACGGTTACACTAAAACACTATTTGAAACATGACAACATCTGGAAATCAGT
AAGTTTTATTCCGTTATAGTTCAGGAGTAAAAACTGTCTTCAATCTGTAT
TGTGTTTGGAATATTCAACATCGAGACAGAATGCTCGCAAAAATTGATTG
TGTACGAGAAGAAAAATAAAGAAGACGAGAAATTTTTCTTCGCACTCTTT
CACCTTTTTGTTACGCTGTATCAGGGGAAGAAAGATACATTTACTGATAA
CTTTGGAGAAAAAAATCCTTCTAGTCTATTTTTTCATCTAAGGAGTATCA
AAGAAATCTTTTTACTGTATGATTCCTGTGATTGATATTCCTTTCTTCTT
TTTGTTTCATTAGCTCCTCCTGCAAAAGTAAAGAAATTGATGCCGGTCGA
CTTATACACTAAACCGAGACTGAAAGTATGTTTATTAAATATTCGTTTAA
TTCATTGAGCAGACATTTTAACTTCCTTATTCAACTTGTTTTCGTATTAC
CTTGTAAGTATTTTTAATGTTTCTTTTTATTTAAAAAATAGTACTATTAT
TCTTCTTTTACTTTAGAAGTGCAAAGAATGCGGCGTTTCTGCTAAATCAA
ATAATTCAAAGGTTTGTACCAATGGCCACCCGTTCACGAGAAAGAAAAAG
CCGCCAATCGAGTGCGTGCCAGCGGGCATGACCCAGGTCACCGATGTCAG
GCATAATTGGGAGACAAATGTAATTTTTTTTTCATAATTAAAATTTCCAT
TCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014467XLOC_014467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025760-exon-sc0000545-1575043694:103275..103275TCONS_00025760-exon-sc0000545-1575043694:103275..103275Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1575043694:102028..102221TCONS_00025760-exon-sc0000545-1575043694:102028..102221Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1575043694:101651..101712TCONS_00025760-exon-sc0000545-1575043694:101651..101712Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1575043694:101321..101509TCONS_00025760-exon-sc0000545-1575043694:101321..101509Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1510915933:103275..103275TCONS_00025760-exon-sc0000545-1510915933:103275..103275Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1510915933:102028..102221TCONS_00025760-exon-sc0000545-1510915933:102028..102221Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1510915933:101651..101712TCONS_00025760-exon-sc0000545-1510915933:101651..101712Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1510915933:101321..101509TCONS_00025760-exon-sc0000545-1510915933:101321..101509Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1491911889:103275..103275TCONS_00025760-exon-sc0000545-1491911889:103275..103275Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1491911889:102028..102221TCONS_00025760-exon-sc0000545-1491911889:102028..102221Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1491911889:101651..101712TCONS_00025760-exon-sc0000545-1491911889:101651..101712Clytia hemisphaericaexon
TCONS_00025760-exon-sc0000545-1491911889:101321..101509TCONS_00025760-exon-sc0000545-1491911889:101321..101509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:101321..103275 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.36742	5.65253	6.06283	2.96076	2.1612	1.76512	2.14937	1.6617	2.18568	1.54077	0	0	0	0	0	0	0.0304304	0	0	0	0	1.36333	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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