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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025703 ID=TCONS_00025703|Name=TCONS_00025703|organism=Clytia hemisphaerica|type=transcript|length=2234bp
ATAATGTTGGTTTGGGATATGAGATGACTTTTGTACTCATTTCATGTGAG
ACACTTGTTTGCAACAAGATTTTCATGCTTGGACCTTTGTAAATAGTTTA
AAAATGCCAATGCGATGATATTGGATCTTACTTATTAATGGACAATTACT
TCTTTTTTCGGACAGATTTTTTCTGCATAAAAAAAGGCCATTTATTTCGA
GAGAaaccttttcaaacattttaaatTTGCCAATGATGATATTTGATCCT
ATTGTATTTAATTGTCTACTCctaatagttttgaaatataaaaatcTTAA
AGGTCTACAAACATGGACATTATTATCGTTTGAGAAAAACGCTGGAAAAT
GCTGGAAACACAATGGAATGGTTTCCCCAGTGGCAATGTTTAGTGCGAAC
GGCCTTCTCACCGACTTTTCCACTGGGGGAAGGGGGCGAAGCTCATATTC
TACCCTTCTCTCACaatttttgtccatgattgtaggcTTCTTCAAGTTTT
CAACAATAATTCTGACATCTATGAGGAGttaggctgcgcgcatccccaga
atttattttgttatatatcaaatcatatcagaggggatgtgtgcagccta
atGAGGAGTTGACAAAAAAGCAGGTTTTATAACTCACTTTTTGAATCACC
CTTATTATATGGCTATTAAAGAAATTTCACTCTTATTGAGCAACTGTTCA
TTAGTCGTTTGTTTTGTTTGAATGTGATGTGAAAAATAAACTAATGTGGT
GCACGAAGTTGAAAGAATTCAATATGAAGAAGGTTTGAAACAGATGTTCA
TTATGGAAAAAGAGAAtgaaaagagcatgaaaaaagATGCTAATGTTTCT
TGTATTACTGATTTTTGGGCAGAATGGATTAATCAGCACAGTTTACACAA
ATTACAAAGAAGATTTGGGGAATGGTTTCGATTTGGAGCACTTTCAAACA
TTTGATAAAATCGTTGAAGAATTGAAAGAGCTAGCAAACGAAAATACCAC
GGATAACAAAGTTTTCGAAAAGTCTTTGATTAGCCTTGGAGAAACCTTTG
AAGGGAGAGAGATATACGCATTTAAGtttatcagaaaaaatgacaatgaa
aataaacgCAAAACTATGGTCATTGAATGTGGAGCTCACGCAAGAGAATG
GGTCAGTGTATCGACATGTGTTTACATCATTACTCGGATTGCAAGATCCT
CAAATACTGCGAATACAGTTTCGAAGTATGACTGGGTCCTTATTCCAGTT
TTAAATCCTGATGGATATGTTTACACGTGGAAGAATTCAACGACACGAAT
GTGGCGCAAGAATAGGTCATTCACTGAAGAACAAATGAAAATCTATCTTG
AGAAGAAAGATGATGTTTGTATTGGTGTTGATATTAATCGAAACTTTGAT
TCGAATTGGGGAGGTCCTGGTGCTCCTAAAACTCCATGTTTCACAATGTA
TGCAGGACCAAAGCCTTTCTCGGAAAATGAATCCAAAGCACTGGTAAACT
TTTTAACGGATAATAAAGACGAAGTTATTGCTTACATCTCACTTCATACT
TTTGGACAAAAATGGATGACACCTTTCGGACATTCGAAAGAGAAACCAAC
CAATCTAAATGAAATGGAGCGTGTTGCATTACTATCAGTGGAAGCCATCA
AGAAAGTTAGTGGTCTGGTGTATACAGTAGGATCTTCTCATGATATTATG
TATCCGAATTCTGGTAGCAGTGTAGACTGGGCTTCTAAAACCTTAAGCAT
ACCCTACACTTACCTCGTTGAAATGGTACCTAAAAATGCAACGTTGGAAG
TTGGTTTCATGGCTGAACCTGAGTTAAtgatggaaaattgcaaaaCGATA
TGGATCGGTTTACAAGCTATGGCTTCGCATTTGAAGAATGATTCATGAAT
GTTAACAAACTCGACaccagtcccttagttcgctTTTGTTTGATTATGAA
AGCACTCACGAAAGGCCGCACCCATCCATCAGTAAAATCGAAAAGTGGTG
CAAGTGGCTCTCTGGGATGAGATTGGAATGTTACTGAGGATTAATGATTT
TGCCATATTCTTGAGATACAAaatgacacccccttctcacagacccggtg
ggattttatcacgTATCTGCGAATGgggtagactatgctatagtctaaga
cgagtttcatctaagaggaacaaacgtgaagacgggaattttttacggga
gtagctgttgtcgtaaacacagactctatccgNN Run BLAST on NCBI protein sequence of TCONS_00025703-protein >TCONS_00025703-protein ID=TCONS_00025703-protein|Name=TCONS_00025703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MLMFLVLLIFGQNGLISTVYTNYKEDLGNGFDLEHFQTFDKIVEELKELA
NENTTDNKVFEKSLISLGETFEGREIYAFKFIRKNDNENKRKTMVIECGA
HAREWVSVSTCVYIITRIARSSNTANTVSKYDWVLIPVLNPDGYVYTWKN
STTRMWRKNRSFTEEQMKIYLEKKDDVCIGVDINRNFDSNWGGPGAPKTP
CFTMYAGPKPFSENESKALVNFLTDNKDEVIAYISLHTFGQKWMTPFGHS
KEKPTNLNEMERVALLSVEAIKKVSGLVYTVGSSHDIMYPNSGSSVDWAS
KTLSIPYTYLVEMVPKNATLEVGFMAEPELMMENCKTIWIGLQAMASHLK
NDS Run BLAST on NCBI transcript from alignment at sc0000543:193042..201586+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025703 ID=TCONS_00025703|Name=TCONS_00025703|organism=Clytia hemisphaerica|type=transcript|length=8545bp|location=Sequence derived from alignment at sc0000543:193042..201586+ (Clytia hemisphaerica)
ATAATGTTGGTTTGGGATATGAGATGACTTTTGTACTCATTTCATGTGAG
ACACTTGTTTGCAACAAGATTTTCATGCTTGGACCTTTGTAAATAGTTTA
AAAATGCCAATGCGATGATATTGGATCTTACTTATTAATGGACAATTACT
TCTTTTTTCGGACAGATTTTTTCTGCATAAAAAAAGGCCATTTATTTCGA
GAGAaaccttttcaaacattttaaatTTGCCAATGATGATATTTGATCCT
ATTGTATTTAATTGTCTACTCctaatagttttgaaatataaaaatcTTAA
AGGTCTACAAACATGGACATTATTATCGTTTGAGAAAAACGCTGGAAAAT
GCTGGAAACACAATGGAATGGTTTCCCCAGTGGCAATGTTTAGTGCGAAC
GGCCTTCTCACCGACTTTTCCACTGGGGGAAGGGGGCGAAGCTCATATTC
TACCCTTCTCTCACaatttttgtccatgattgtaggcTTCTTCAAGTTTT
CAACAATAATTCTGACATCTATGAGGAGttaggctgcgcgcatccccaga
atttattttgttatatatcaaatcatatcagaggggatgtgtgcagccta
atGAGGAGTTGACAAAAAAGCAGGTTTTATAACTCACTTTTTGAATCACC
CTTATTATATGGCTATTAAAGAAATTTCACTCTTATTGAGCAACTGTTCA
TTAGTCGTTTGTTTTGTTTGAATGTGATGTGAAAAATAAACTAATGTGGT
GCACGAAGTTGAAAGAATTCAATATGAAGAAGGTTTGAAACAGATGTTCA
TTATGGAAAAAGAGAAtgaaaagagcatgaaaaaagATGCTAATGTTTCT
TGTATTACTGATTTTTGGGCAGAATGGATTAATCAGCACAGTTTACACAA
ATTACAAAGAAGATTTGGGGAATGGTTTCGATTTGGAGCACTTTCAAACA
TTTGATAAAGTAAATTCTTCTCGTTTCTTCAGCTACACgctattttttta
attagaacaATTTCAACACTGAGGCTCAGAAAGCCAAAAATAAGCCAAAC
TTTCGATTCAAGCCTAAAACCATGCTAGACaatcagtggcggcctggcag
ggggtgcaggctgtacagtgcaccacccagaaagatcgaCGAGGGgtgcc
aaaagagcttttcaagggcgcgccaaaattttattgatgtttaattgggc
gACTTGGCGCCCTTCGACAAATTTATAacgccttctataagtgcaatatt
aattttttcgcctgcgcttcgttttattttacgctCTTGCATCCTTTCTC
TTGACTTTCTTAAAAACTACTCTCAACATTGAATcgcgaaaagtcaaagc
aaaaGAAGTGTTGTGAATTCACTAGGGGTTAAAAAGGATGCTCACCTTCA
AAAAGTCAGACCAGcgagtaaagtaagaccagcgAGTAAAATAAGACCAG
CGGCGCAAAAGTTTTAAGATTATTAGGTAATTTTCCTaataaagttttag
aaaacaaaattatAGACCAAATCGACTTGCtaggtataaaatttccattt
caagtatcaaaagctcatgttttttatggcaCCATTTTTTTGGTGCTAAA
TCGGTATAAGATAAATCGATAAATTGAggcatttttagacatttttccTT
GTTCAGAAAACtatgacatttcaaattataactaggaaatagatatcaag
ttatcattactaccaccttcgtataaataaaagttttttaactctgggcg
ttactttcaaccagtcacggCTCTTACAGTTCAATATTtccacttaatga
tggagggcgcaagtaaggataaaagtaccaggggcgccaatttcatagtt
tgcaccatcaagaaaattaagccaggccgctactgaaAGACAATAGCCTC
TAGCCAAAAAAGACTAGATAAACTTTCACattgatattttatattttacc
cACATAACTGTTCTTGTGTTCAGTGAGACAGTGTTTTTGAAGGCCCACAT
TAACCATTTATCATTCGATTGGTGATGTGAATTAAAATGACTCACTAGGT
AAAGCAATAAGTATTCTGGTTCCTGGTCTAAACCTTTAATGACCTTTTTG
CCTTGTTCATCAATaacttgaaaatcaattttctacaGATCGTTGAAGAA
TTGAAAGAGCTAGCAAACGAAAATACCACGGATAACAAAGTTTTCGAAAA
GTCTTTGATTAGCCTTGGAGAAACCTTTGAAGGGAGAGAGATATACGCAT
TTAAGGTAAGTCTCCATTTGGTAGTCACTTTattagcatgaaggtagagc
gtTCAGCTATTGAGAGCAAGGCGGTAGGTTCATATACCACTCAAAATGTG
AGATGAACAATgtaagtggagaaatctagGAAAAGGATCACACTCGACTG
TGGTTGAAAACTTACTAGATACAAATAAGAATGCAAGTGCGATTAAGTAA
GAAAATGGCCGAATGACACGCTATATATAATCGAATCTCTGGGATTCGGA
CAGCCCAATAAACAAAGAGAGTAAAGGCTTAATTAAGAAACCtactgtta
aaaatattttggttagCTTAGAGAGCCCATCCCCCAGCGGACTTTCAATT
CATgcaatcacgcattttttttttttcaagcattcCCGCAATTTTCTTTC
GCAATTCACGCGATTTCTTTTCACACAAAGTTTTctgattcacgcattca
tgcatttttttaaaatttttacgcATTcccgcaagtgaaaaagccaaTTT
AAGGCTTTGCACCAATCTCGTTGTTAGCACCCAAACgctcccccccccca
aaaaaaaagtcCACTTCTTGTtgatttcaatttctttgatatcaattttt
ttagtttatcagaaaaaatgacaatgaaaataaacgCAAAACTATGGTCA
TTGAATGTGGAGCTCACGCAAGAGAATGGGTCAGTGTATCGACATGTGTT
TACATCATTACTCGGGTAAGTCTCGACAATCGTTCGACTGATTCAGatat
attagaaataaagccaAAAGGGGGccaaaagtaatggagggaacaaattt
cagtcttgtttatacaaactaaatcccgtaacaataatcgtattatatct
accgtgaaaagcacagctcaaaatcatatatttacgctgtgccgacgaat
cgagattctattcatcgcgcaatcagcaaagacaaaagtaaccatgacgN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctaa
aaagagtcagtgatagagaatcataacataaagtctgtctattatttcga
ttcaattaaagtgacatttccataattaaaagtttagtNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaatatt
tgctcttcatctttgattttttctacagtgattagattgacacatgcgcg
ataaaatttctattatttgtcttcagaggttactattttttttgataact
taacctctgatactcagggtatattatatcatataacgcctacaCCACTG
TatttacacgcattataaacgactccagtctacttgTTTGTGTACTCGTC
ATTCTTTGTTTGATTatacttttaccgtcctcaatttGAAAGGTCAAAAC
tgtgggttattccaaatcgcttcagccaGTCCACCgttctcaaaagtgca
aatacataaacaacTTACGTGTTACCTAAATGTTACCCCATGTTAGGCTG
TTGCTAACCCTCTAGTGAAAAGAGTTTCTTACACATGGTTTCTTATATAG
TTTCGTGTATATAGAAGTATATCTACAGAAGTCTGCAATTCACACTAACT
TCATGTTTGAGAGATTATTCAAAGTGACGGTTGCTTACCTAATGTAATAG
AACATGTAGTTATGGACCACATAGattagagtctacttttggctgaactt
tgcttttcgatatttttttatgacgctgagtccagtaaagtagactagga
gcacttggcgaggtcgccattttgagagaaaatgttaaaaatccaaataa
caataaaactacttggagttgaaagataatcaaaaatgagaaacaaccat
caataacagatttgcaatccttattctcaaataaaaacattgcctgtttt
taccttccaaaaacaactaaaatctcccggcggactgttttactgtccgc
ctaagcaaaaacatattaccatatactaccgggccacttaatcgcgccat
ccagtctatcaaaaagcttcaAGTGAACCCCGGgctatcccagctggcac
acaacgttgtttcaacgttcgtctaacgttatatggacgttgtgaacgtt
agatggacgttgaaaaaacgttgaaacaacgttgtgtgccagctgggatg
gaCCACATTGCTTTTTAAAATGAATATGCTCCGTATTTTAATAAATGATC
TCTGAAATCTCTAGTCCCTGGCAACAATCATTACTCAAATGATAGATGAT
TTTATGAATGAGATTGCTCCACAAACTAGTTAAAAAAACGGTGACCACAA
GTCGTTAGTAAACTTATCGAATATGGTCAATTCTTAACATTCACTAAGTT
AACGCaagtaaaaatttgttttttaacaTTTATCTAGACGGGCAGACAGT
CTGGAAAGGCTGACCGCTCACATTTTATAAATCAATTGAAACGAGAGTAC
TATAAACACCGGAACCTagttttatttttgtgtttttaaaacataaaaga
ctatCGATCCAATACTTCAgcccaataaaattataaaactttggtcaaaa
tttcaaaaatttatgtaAGACCCTTTGAGTGAGTCAATTTCGGAGTTTCA
CGGAATCCTTATGGACACTGACTTATTCTTCCATGGCTTTTTACTCCTCT
GAGGGACCTTTGTGAGTTAGAAAAAGGTAACCCTTATGGCTCTCACATAC
CCAATAGCCGTTTTACCCAAGCGCGTCCCCAGGGATACGTGTTGTAATAG
AATATCGATAGTTTCTAGTCCCTTGATAAGCAGGCTTTAATGTAAACAAG
CTTATAATTTATTACGGGTTTAATACAAATACGATAATGAATTTTCTATT
GCTGTCAAAGAGATTGCTCCACAAACCAGTATTAACAAGAGGGACCACAA
GTCGTTTGTAGGCTTGTTGAGTATGGTTTATTTTCAACCACCTCAGCCAT
GCaagtaaaatttgttttttaacaTTTATCTAGACGGGCGGAAAGTCTGA
AAAGGCTGACTACCCAAATGACATAATAATTGAATTATATCTACAGAAAT
CATATAGGCACATATCTCAACACAGCTGAGAAGTGCGACTGTAAGCTTCT
GTGTATCAATTTCCACACTCGAAGGGGAAAACAGGGAAAGTCAAGATAAC
GAATGTGGCAGTACACTTATTTGTTTGTTCTCCTTACAGATTGCAAGATC
CTCAAATACTGCGAATACAGTTTCGAAGTATGACTGGGTCCTTATTCCAG
TTTTAAATCCTGATGGATATGTTTACACGTGGAAGAATTCAACGACACGA
ATGTGGCGCAAGAATAGGTCATTCACTGAAGAACAAATGAAAATCTATCT
TGAGAAGAAAGATGATGTTTGTATTGGTGTTGATATTAATCGAAACTTTG
ATTCGAATTGGGGAGGTAATAGATTAATGTTGTGGTCAAACTCGAGCCCA
GTCCCTTAATTCACTATTTTCATCCTAAGATGCACTTTCAAAAGTTTTAC
GTCTATCAGTAAATTCATAAAGTTGTACATGTAGATTggaattgcaaaaa
aaagaaattgtcatTTATAAAAGGTATAAGGCGACTTTAGAATTTAAAAG
GGGCaatttaattcacttttttgaaaagatatcgAATTGTACATTGTAAT
TAtgtattcataatataaaaagataattgctGGTTGATCACGTTGGTCCT
TCCGATCACGTTATCatctagactagcaaactagtctgttaatgtcagag
ggcggggaaataaaggcggcgggcgtttgctagaattaggagctgcgtag
gagaaagAGAAAacgttggtgagaggctgctttcagcccttgccgccgac
aaaatttcttcctacgcttacctaactcctatgCTCACTTTTCCcacgtg
ataccgttccagcccgactggcgtgccagtctagttatcatttatctgat
attccgatggcgtattggcggccgcNGGGGAGGTAATAGATTAATGTTGT
GGTCAAACTCGAGCCCAGTCCCTTAATTCACTATTTTCATCCTAAGATGC
ACTTTCAAAAGTTTTACGTCTATCAGCAAATTTATAAAGTTGTACATGTA
GATTggaattgcaaaaaaaagaaattgtcatTTATAAAAGGTATAAGGCG
ACTTTAAAATTTAAAAGGGGCaatttaattcacttttttgaaaagatatc
gAATTGTACATTGTAATTAtgtattcataatataaaaagataattgctGG
TTGATCACGTTGGTCCTTCCGATCACGTTATCatctagactagcaaacta
gtctgttaatgtcagagggcgggaaaataaaggcggcgggcgtttgctag
aattaggagctgcgtaggagaacgagaaaaagttggtgagaggctgcttt
cagtccttgccgccgacaaaatttcttcctacgcttacctaactcctatg
CTCACTTTTCCcacgtgataccgttccagcccgactggcgtgccagtcta
gttatcatttatctgatattccgatggcgtattggcggccgcccacgcta
aagctctaaaggagcgggccaataatatttttccgaccttcagagcttta
gcgtgtcggaagaaaatttctacatcgactACCAGATAAAGTTATCATcc
actttaaaatcttaaatcacgagATCACGAACTTGAACAAACACCAATCA
CGCTCTTAGTTAGTTCACATTTAAATTGAGATACATTTCAACCATAGGTC
CTGGTGCTCCTAAAACTCCATGTTTCACAATGTATGCAGGACCAAAGCCT
TTCTCGGAAAATGAATCCAAAGCACTGGTAAACTTTTTAACGGATAATAA
AGACGAAGTTATTGCTTACATCTCACTTCATACTTTTGGACAAAAATGGA
TGACACCTTTCGGACATTCGAAAGAGAAACCAACCAATCTAAATGAAATG
gtatatgtttttgataataataaagaaaaagtgCTTCTTTCCTAGGCCGA
GTAACAAACTTAGATATACAGTGacttaactcaaacaagttttatGACCC
CTTCAAATGTCAATGTTTTGTTTTAGGAGCGTGTTGCATTACTATCAGTG
GAAGCCATCAAGAAAGTTAGTGGTCTGGTGTATACAGTAGGATCTTCTCA
TGATATTATGTGTAAGTAGGATGAATCATCACTCCAGAAATTAATTAAAA
GCGATATTTTTTCATAAGTAAGTCAGTCAATATGCTGACAAATTCATTTA
ACTTTACACCCCCGTATCAAAACTAAACTCGTCCATCTACTAGACATTCG
AACCAAAATCAGCCATTAAAATTCCCGATGAGAGGGCATTATACCGTCGA
GTTATATCCCTATTGGAAACCCTCATTATAACCATAGATTTAATTTTGAC
TTATTTTTTCAGATCCGAATTCTGGTAGCAGTGTAGACTGGGCTTCTAAA
ACCTTAAGCATACCCTACACTTACCTCGTTGAAATGGTACCTAAAAATGC
AACGTTGGAAGTTGGTTTCATGGCTGAACCTGAGTTAAtgatggaaaatt
gcaaaaCGATATGGATCGGTTTACAAGCTATGGCTTCGCATTTGAAGAAT
GATTCATGAATGTTAACAAACTCGACaccagtcccttagttcgctTTTGT
TTGATTATGAAAGCACTCACGAAAGGCCGCACCCATCCATCAGTAAAATC
GAAAAGTGGTGCAAGTGGCTCTCTGGGATGAGATTGGAATGTTACTGAGG
ATTAATGATTTTGCCATATTCTTGAGATACAAaatgacacccccttctca
cagacccggtgggattttatcacgTATCTGCGAATGgggtagactatgct
atagtctaagacgagtttcatctaagaggaacaaacgtgaagacgggaat
tttttacgggagtagctgttgtcgtaaacacagactctatccgNN Coding sequence (CDS) from alignment at sc0000543:193042..201586+ >TCONS_00025703 ID=TCONS_00025703|Name=TCONS_00025703|organism=Clytia hemisphaerica|type=CDS|length=7434bp|location=Sequence derived from alignment at sc0000543:193042..201586+ (Clytia hemisphaerica)
ATGCTAATGTTTCTTGTATTACTGATTTTTGGGCAGAATGGATTAATCAG
CACAGTTTACACAAATTACAAAGAAGATTTGGGGAATGGTTTCGATTTGG
AGCACTTTCAAACATTTGATAAAATCGTTGAAGAATTGAAAGAGCTAGCA
AACGAAAATACCACGGATAACAAAGTTTTCGAAAAGTCTTTGATTAGCCT
TGGAGAAACCTTTGAAGGGAGAGAGATATACGCATTTAAGtttatcagaa
aaaatgacaatgaaaataaacgCAAAACTATGGTCATTGAATGTGGAGCT
CACGCAAGAGAATGGGTCAGTGTATCGACATGTGTTTACATCATTACTCG
GATTGCAAGATCCTCAAATACTGCGAATACAGTTTCGAAGTATGACTGGG
TCCTTATTCCAGTTTTAAATCCTGATGGATATGTTTACACGTGGAAGAAT
TCAACGACACGAATGTGGCGCAAGAATAGGTCATTCACTGAAGAACAAAT
GAAAATCTATCTTGAGAAGAAAGATGATGTTTGTATTGGTGTTGATATTA
ATCGAAACTTTGATTCGAATTGGGGAGGTCCTGGTGCTCCTAAAACTCCA
TGTTTCACAATGTATGCAGGACCAAAGCCTTTCTCGGAAAATGAATCCAA
AGCACTGGTAAACTTTTTAACGGATAATAAAGACGAAGTTATTGCTTACA
TCTCACTTCATACTTTTGGACAAAAATGGATGACACCTTTCGGACATTCG
AAAGAGAAACCAACCAATCTAAATGAAATGGAGCGTGTTGCATTACTATC
AGTGGAAGCCATCAAGAAAGTTAGTGGTCTGGTGTATACAGTAGGATCTT
CTCATGATATTATGTATCCGAATTCTGGTAGCAGTGTAGACTGGGCTTCT
AAAACCTTAAGCATACCCTACACTTACCTCGTTGAAATGGTACCTAAAAA
TGCAACGTTGGAAGTTGGTTTCATGGCTGAACCTGAGTTAAtgatggaaa
attgcaaaaCGATATGGATCGGTTTACAAGCTATGGCTTCGCATTTGAAG
AATGATTCATGAATGCTAATGTTTCTTGTATTACTGATTTTTGGGCAGAA
TGGATTAATCAGCACAGTTTACACAAATTACAAAGAAGATTTGGGGAATG
GTTTCGATTTGGAGCACTTTCAAACATTTGATAAAATCGTTGAAGAATTG
AAAGAGCTAGCAAACGAAAATACCACGGATAACAAAGTTTTCGAAAAGTC
TTTGATTAGCCTTGGAGAAACCTTTGAAGGGAGAGAGATATACGCATTTA
AGtttatcagaaaaaatgacaatgaaaataaacgCAAAACTATGGTCATT
GAATGTGGAGCTCACGCAAGAGAATGGGTCAGTGTATCGACATGTGTTTA
CATCATTACTCGGATTGCAAGATCCTCAAATACTGCGAATACAGTTTCGA
AGTATGACTGGGTCCTTATTCCAGTTTTAAATCCTGATGGATATGTTTAC
ACGTGGAAGAATTCAACGACACGAATGTGGCGCAAGAATAGGTCATTCAC
TGAAGAACAAATGAAAATCTATCTTGAGAAGAAAGATGATGTTTGTATTG
GTGTTGATATTAATCGAAACTTTGATTCGAATTGGGGAGGTCCTGGTGCT
CCTAAAACTCCATGTTTCACAATGTATGCAGGACCAAAGCCTTTCTCGGA
AAATGAATCCAAAGCACTGGTAAACTTTTTAACGGATAATAAAGACGAAG
TTATTGCTTACATCTCACTTCATACTTTTGGACAAAAATGGATGACACCT
TTCGGACATTCGAAAGAGAAACCAACCAATCTAAATGAAATGGAGCGTGT
TGCATTACTATCAGTGGAAGCCATCAAGAAAGTTAGTGGTCTGGTGTATA
CAGTAGGATCTTCTCATGATATTATGTATCCGAATTCTGGTAGCAGTGTA
GACTGGGCTTCTAAAACCTTAAGCATACCCTACACTTACCTCGTTGAAAT
GGTACCTAAAAATGCAACGTTGGAAGTTGGTTTCATGGCTGAACCTGAGT
TAAtgatggaaaattgcaaaaCGATATGGATCGGTTTACAAGCTATGGCT
TCGCATTTGAAGAATGATTCATGAATGCTAATGTTTCTTGTATTACTGAT
TTTTGGGCAGAATGGATTAATCAGCACAGTTTACACAAATTACAAAGAAG
ATTTGGGGAATGGTTTCGATTTGGAGCACTTTCAAACATTTGATAAAATC
GTTGAAGAATTGAAAGAGCTAGCAAACGAAAATACCACGGATAACAAAGT
TTTCGAAAAGTCTTTGATTAGCCTTGGAGAAACCTTTGAAGGGAGAGAGA
TATACGCATTTAAGtttatcagaaaaaatgacaatgaaaataaacgCAAA
ACTATGGTCATTGAATGTGGAGCTCACGCAAGAGAATGGGTCAGTGTATC
GACATGTGTTTACATCATTACTCGGATTGCAAGATCCTCAAATACTGCGA
ATACAGTTTCGAAGTATGACTGGGTCCTTATTCCAGTTTTAAATCCTGAT
GGATATGTTTACACGTGGAAGAATTCAACGACACGAATGTGGCGCAAGAA
TAGGTCATTCACTGAAGAACAAATGAAAATCTATCTTGAGAAGAAAGATG
ATGTTTGTATTGGTGTTGATATTAATCGAAACTTTGATTCGAATTGGGGA
GGTCCTGGTGCTCCTAAAACTCCATGTTTCACAATGTATGCAGGACCAAA
GCCTTTCTCGGAAAATGAATCCAAAGCACTGGTAAACTTTTTAACGGATA
ATAAAGACGAAGTTATTGCTTACATCTCACTTCATACTTTTGGACAAAAA
TGGATGACACCTTTCGGACATTCGAAAGAGAAACCAACCAATCTAAATGA
AATGGAGCGTGTTGCATTACTATCAGTGGAAGCCATCAAGAAAGTTAGTG
GTCTGGTGTATACAGTAGGATCTTCTCATGATATTATGTATCCGAATTCT
GGTAGCAGTGTAGACTGGGCTTCTAAAACCTTAAGCATACCCTACACTTA
CCTCGTTGAAATGGTACCTAAAAATGCAACGTTGGAAGTTGGTTTCATGG
CTGAACCTGAGTTAAtgatggaaaattgcaaaaCGATATGGATCGGTTTA
CAAGCTATGGCTTCGCATTTGAAGAATGATTCATGAATGCTAATGTTTCT
TGTATTACTGATTTTTGGGCAGAATGGATTAATCAGCACAGTTTACACAA
ATTACAAAGAAGATTTGGGGAATGGTTTCGATTTGGAGCACTTTCAAACA
TTTGATAAAATCGTTGAAGAATTGAAAGAGCTAGCAAACGAAAATACCAC
GGATAACAAAGTTTTCGAAAAGTCTTTGATTAGCCTTGGAGAAACCTTTG
AAGGGAGAGAGATATACGCATTTAAGtttatcagaaaaaatgacaatgaa
aataaacgCAAAACTATGGTCATTGAATGTGGAGCTCACGCAAGAGAATG
GGTCAGTGTATCGACATGTGTTTACATCATTACTCGGATTGCAAGATCCT
CAAATACTGCGAATACAGTTTCGAAGTATGACTGGGTCCTTATTCCAGTT
TTAAATCCTGATGGATATGTTTACACGTGGAAGAATTCAACGACACGAAT
GTGGCGCAAGAATAGGTCATTCACTGAAGAACAAATGAAAATCTATCTTG
AGAAGAAAGATGATGTTTGTATTGGTGTTGATATTAATCGAAACTTTGAT
TCGAATTGGGGAGGTCCTGGTGCTCCTAAAACTCCATGTTTCACAATGTA
TGCAGGACCAAAGCCTTTCTCGGAAAATGAATCCAAAGCACTGGTAAACT
TTTTAACGGATAATAAAGACGAAGTTATTGCTTACATCTCACTTCATACT
TTTGGACAAAAATGGATGACACCTTTCGGACATTCGAAAGAGAAACCAAC
CAATCTAAATGAAATGGAGCGTGTTGCATTACTATCAGTGGAAGCCATCA
AGAAAGTTAGTGGTCTGGTGTATACAGTAGGATCTTCTCATGATATTATG
TATCCGAATTCTGGTAGCAGTGTAGACTGGGCTTCTAAAACCTTAAGCAT
ACCCTACACTTACCTCGTTGAAATGGTACCTAAAAATGCAACGTTGGAAG
TTGGTTTCATGGCTGAACCTGAGTTAAtgatggaaaattgcaaaaCGATA
TGGATCGGTTTACAAGCTATGGCTTCGCATTTGAAGAATGATTCATGAAT
GCTAATGTTTCTTGTATTACTGATTTTTGGGCAGAATGGATTAATCAGCA
CAGTTTACACAAATTACAAAGAAGATTTGGGGAATGGTTTCGATTTGGAG
CACTTTCAAACATTTGATAAAATCGTTGAAGAATTGAAAGAGCTAGCAAA
CGAAAATACCACGGATAACAAAGTTTTCGAAAAGTCTTTGATTAGCCTTG
GAGAAACCTTTGAAGGGAGAGAGATATACGCATTTAAGtttatcagaaaa
aatgacaatgaaaataaacgCAAAACTATGGTCATTGAATGTGGAGCTCA
CGCAAGAGAATGGGTCAGTGTATCGACATGTGTTTACATCATTACTCGGA
TTGCAAGATCCTCAAATACTGCGAATACAGTTTCGAAGTATGACTGGGTC
CTTATTCCAGTTTTAAATCCTGATGGATATGTTTACACGTGGAAGAATTC
AACGACACGAATGTGGCGCAAGAATAGGTCATTCACTGAAGAACAAATGA
AAATCTATCTTGAGAAGAAAGATGATGTTTGTATTGGTGTTGATATTAAT
CGAAACTTTGATTCGAATTGGGGAGGTCCTGGTGCTCCTAAAACTCCATG
TTTCACAATGTATGCAGGACCAAAGCCTTTCTCGGAAAATGAATCCAAAG
CACTGGTAAACTTTTTAACGGATAATAAAGACGAAGTTATTGCTTACATC
TCACTTCATACTTTTGGACAAAAATGGATGACACCTTTCGGACATTCGAA
AGAGAAACCAACCAATCTAAATGAAATGGAGCGTGTTGCATTACTATCAG
TGGAAGCCATCAAGAAAGTTAGTGGTCTGGTGTATACAGTAGGATCTTCT
CATGATATTATGTATCCGAATTCTGGTAGCAGTGTAGACTGGGCTTCTAA
AACCTTAAGCATACCCTACACTTACCTCGTTGAAATGGTACCTAAAAATG
CAACGTTGGAAGTTGGTTTCATGGCTGAACCTGAGTTAAtgatggaaaat
tgcaaaaCGATATGGATCGGTTTACAAGCTATGGCTTCGCATTTGAAGAA
TGATTCATGAATGCTAATGTTTCTTGTATTACTGATTTTTGGGCAGAATG
GATTAATCAGCACAGTTTACACAAATTACAAAGAAGATTTGGGGAATGGT
TTCGATTTGGAGCACTTTCAAACATTTGATAAAATCGTTGAAGAATTGAA
AGAGCTAGCAAACGAAAATACCACGGATAACAAAGTTTTCGAAAAGTCTT
TGATTAGCCTTGGAGAAACCTTTGAAGGGAGAGAGATATACGCATTTAAG
tttatcagaaaaaatgacaatgaaaataaacgCAAAACTATGGTCATTGA
ATGTGGAGCTCACGCAAGAGAATGGGTCAGTGTATCGACATGTGTTTACA
TCATTACTCGGATTGCAAGATCCTCAAATACTGCGAATACAGTTTCGAAG
TATGACTGGGTCCTTATTCCAGTTTTAAATCCTGATGGATATGTTTACAC
GTGGAAGAATTCAACGACACGAATGTGGCGCAAGAATAGGTCATTCACTG
AAGAACAAATGAAAATCTATCTTGAGAAGAAAGATGATGTTTGTATTGGT
GTTGATATTAATCGAAACTTTGATTCGAATTGGGGAGGTCCTGGTGCTCC
TAAAACTCCATGTTTCACAATGTATGCAGGACCAAAGCCTTTCTCGGAAA
ATGAATCCAAAGCACTGGTAAACTTTTTAACGGATAATAAAGACGAAGTT
ATTGCTTACATCTCACTTCATACTTTTGGACAAAAATGGATGACACCTTT
CGGACATTCGAAAGAGAAACCAACCAATCTAAATGAAATGGAGCGTGTTG
CATTACTATCAGTGGAAGCCATCAAGAAAGTTAGTGGTCTGGTGTATACA
GTAGGATCTTCTCATGATATTATGTATCCGAATTCTGGTAGCAGTGTAGA
CTGGGCTTCTAAAACCTTAAGCATACCCTACACTTACCTCGTTGAAATGG
TACCTAAAAATGCAACGTTGGAAGTTGGTTTCATGGCTGAACCTGAGTTA
AtgatggaaaattgcaaaaCGATATGGATCGGTTTACAAGCTATGGCTTC
GCATTTGAAGAATGATTCATGAATGCTAATGTTTCTTGTATTACTGATTT
TTGGGCAGAATGGATTAATCAGCACAGTTTACACAAATTACAAAGAAGAT
TTGGGGAATGGTTTCGATTTGGAGCACTTTCAAACATTTGATAAAATCGT
TGAAGAATTGAAAGAGCTAGCAAACGAAAATACCACGGATAACAAAGTTT
TCGAAAAGTCTTTGATTAGCCTTGGAGAAACCTTTGAAGGGAGAGAGATA
TACGCATTTAAGtttatcagaaaaaatgacaatgaaaataaacgCAAAAC
TATGGTCATTGAATGTGGAGCTCACGCAAGAGAATGGGTCAGTGTATCGA
CATGTGTTTACATCATTACTCGGATTGCAAGATCCTCAAATACTGCGAAT
ACAGTTTCGAAGTATGACTGGGTCCTTATTCCAGTTTTAAATCCTGATGG
ATATGTTTACACGTGGAAGAATTCAACGACACGAATGTGGCGCAAGAATA
GGTCATTCACTGAAGAACAAATGAAAATCTATCTTGAGAAGAAAGATGAT
GTTTGTATTGGTGTTGATATTAATCGAAACTTTGATTCGAATTGGGGAGG
TCCTGGTGCTCCTAAAACTCCATGTTTCACAATGTATGCAGGACCAAAGC
CTTTCTCGGAAAATGAATCCAAAGCACTGGTAAACTTTTTAACGGATAAT
AAAGACGAAGTTATTGCTTACATCTCACTTCATACTTTTGGACAAAAATG
GATGACACCTTTCGGACATTCGAAAGAGAAACCAACCAATCTAAATGAAA
TGGAGCGTGTTGCATTACTATCAGTGGAAGCCATCAAGAAAGTTAGTGGT
CTGGTGTATACAGTAGGATCTTCTCATGATATTATGTATCCGAATTCTGG
TAGCAGTGTAGACTGGGCTTCTAAAACCTTAAGCATACCCTACACTTACC
TCGTTGAAATGGTACCTAAAAATGCAACGTTGGAAGTTGGTTTCATGGCT
GAACCTGAGTTAAtgatggaaaattgcaaaaCGATATGGATCGGTTTACA
AGCTATGGCTTCGCATTTGAAGAATGATTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025703-exon-sc0000543-1491911889:193042..194000 | TCONS_00025703-exon-sc0000543-1491911889:193042..194000 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1510915933:193042..194000 | TCONS_00025703-exon-sc0000543-1510915933:193042..194000 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1575043694:193042..194000 | TCONS_00025703-exon-sc0000543-1575043694:193042..194000 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1491911889:195180..195296 | TCONS_00025703-exon-sc0000543-1491911889:195180..195296 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1510915933:195180..195296 | TCONS_00025703-exon-sc0000543-1510915933:195180..195296 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1575043694:195180..195296 | TCONS_00025703-exon-sc0000543-1575043694:195180..195296 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1491911889:195896..196006 | TCONS_00025703-exon-sc0000543-1491911889:195896..196006 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1510915933:195896..196006 | TCONS_00025703-exon-sc0000543-1510915933:195896..196006 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1575043694:195896..196006 | TCONS_00025703-exon-sc0000543-1575043694:195896..196006 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1491911889:198831..199056 | TCONS_00025703-exon-sc0000543-1491911889:198831..199056 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1510915933:198831..199056 | TCONS_00025703-exon-sc0000543-1510915933:198831..199056 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1575043694:198831..199056 | TCONS_00025703-exon-sc0000543-1575043694:198831..199056 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1491911889:200389..200591 | TCONS_00025703-exon-sc0000543-1491911889:200389..200591 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1510915933:200389..200591 | TCONS_00025703-exon-sc0000543-1510915933:200389..200591 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1575043694:200389..200591 | TCONS_00025703-exon-sc0000543-1575043694:200389..200591 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1491911889:200718..200802 | TCONS_00025703-exon-sc0000543-1491911889:200718..200802 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1510915933:200718..200802 | TCONS_00025703-exon-sc0000543-1510915933:200718..200802 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1575043694:200718..200802 | TCONS_00025703-exon-sc0000543-1575043694:200718..200802 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1491911889:201054..201586 | TCONS_00025703-exon-sc0000543-1491911889:201054..201586 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1510915933:201054..201586 | TCONS_00025703-exon-sc0000543-1510915933:201054..201586 | Clytia hemisphaerica | exon |
| TCONS_00025703-exon-sc0000543-1575043694:201054..201586 | TCONS_00025703-exon-sc0000543-1575043694:201054..201586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000543 | supercontig | sc0000543:193042..201586 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0004181 | metallocarboxypeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004181 |
metallocarboxypeptidase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00025703 vs. Swiss-Prot (Human)
Match: CBPO (Carboxypeptidase O OS=Homo sapiens GN=CPO PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.043e-49 Identity = 90/251 (35.86%), Postives = 150/251 (59.76%), Query Frame = 3
Query: 1035 LGETFEGREIYAFKFIRKNDNENKRKTMVIECGAHAREWVSVSTCVYIITRIARSSNTANTVSKY----DWVLIPVLNPDGYVYTWKNSTTRMWRKNRSFTEEQMKIYLEKKDDVCIGVDINRNFDSNWGGPGAPKTPCFTMYAGPKPFSENESKALVNFLTDNKDEVIAYISLHTFGQKWMTPFGHSKEKPTNLNEMERVALLSVEAIKKVSGLVYTVGSSHDIMYPNSGSSVDWASKTLSIPYTYLVEM 1775
LG T+E +Y K + + N +K + ++CG HAREW++ + C + + I ++ +++ K D+ ++PVLN DGY+YTW +T R+WRK+RS + C G D+NRNF+++W GA + + G P SE E+KA+ +F+ KD+++ ++++H++GQ +TP+G++K K +N EM +V + A+K G Y VGSS DI+Y +SGSS DWA + + IP++Y E+
Sbjct: 76 LGVTYETHPMYYLKISQPSGN--PKKIIWMDCGIHAREWIAPAFCQWFVKEILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTW--TTDRLWRKSRS----------PHNNGTCFGTDLNRNFNASWCSIGASRNCQDQTFCGTGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADILYASSGSSRDWA-RDIGIPFSYTFEL 311
The following BLAST results are available for this feature:
|
