TCONS_00025686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025686
Unique NameTCONS_00025686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025686 ID=TCONS_00025686|Name=TCONS_00025686|organism=Clytia hemisphaerica|type=transcript|length=826bp
NNTTGATTTTGGttatatatttataaattttgttgttgatgtttttaaaa
tgagatgtctttagaaaaaaaacaatgaaagaaACATGCTCTGACAGTTC
CAGATGAAtacgtttttcaaaaatgtaatcaGTGCGTCGATTGGTTTCCT
GGTGAAAATATTTTACTGAAATTTGTTTTTCGCTGTAATGATGGTCTTTT
TTAAATTAGAATTGACACGTGCAAGAGTTCCGGTACAGTTCCGCTTATTC
TGCAGCGTCGTCATCATCATTACCGGACGTCCACAAAGTGAGATTGTCTC
GGAGAAGTTGCATGATGAGTGTGGAATCCTTGTATGAATCTTCTGGAAGA
TTATCCAACTCAGCGATCGCATCGTCGAATGCGGATTTCGCAAGTTGGCA
AGCTTTTGAAGAATCGGTCTTGATTTCGTAATGGAAGACTGAATAATTCA
AAGCTAATCCGAGGCGGATGGGGTTAGTCGACTTCAATTTCTGTTTCGAG
ATGTCCGTGGCTTTTCCGTAAGCTCCATCAGCTTCTTCGATAACGTTTCT
ACGCTCGTCTGAATCTGGTGCTCCTACTTCAGCCAAATATCTACAGCGAA
TCAAACAAAGATAATGTTAGGAAATGAGTCGAAAAATCGCTGTCTAAAgt
tataggccatttcacagtcgaaagggatcatgggtaatcgggactgattg
cgcctccataacgACTTCCTGTTGGCTAAACACAgcagtcgcgcggctga
ggtcgaaaaaagtggctagaaaatgattttcgtgatacacctcttagaac
taactttttttggtggaaactcgcga
Run BLAST on NCBI

transcript from alignment at sc0000542:4220..5045

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025686 ID=TCONS_00025686|Name=TCONS_00025686|organism=Clytia hemisphaerica|type=transcript|length=826bp|location=Sequence derived from alignment at sc0000542:4220..5045 (Clytia hemisphaerica)
tcgcgagtttccaccaaaaaaagttagttctaagaggtgtatcacgaaaa
tcattttctagccacttttttcgacctcagccgcgcgactgcTGTGTTTA
GCCAACAGGAAGTcgttatggaggcgcaatcagtcccgattacccatgat
ccctttcgactgtgaaatggcctataacTTTAGACAGCGATTTTTCGACT
CATTTCCTAACATTATCTTTGTTTGATTCGCTGTAGATATTTGGCTGAAG
TAGGAGCACCAGATTCAGACGAGCGTAGAAACGTTATCGAAGAAGCTGAT
GGAGCTTACGGAAAAGCCACGGACATCTCGAAACAGAAATTGAAGTCGAC
TAACCCCATCCGCCTCGGATTAGCTTTGAATTATTCAGTCTTCCATTACG
AAATCAAGACCGATTCTTCAAAAGCTTGCCAACTTGCGAAATCCGCATTC
GACGATGCGATCGCTGAGTTGGATAATCTTCCAGAAGATTCATACAAGGA
TTCCACACTCATCATGCAACTTCTCCGAGACAATCTCACTTTGTGGACGT
CCGGTAATGATGATGACGACGCTGCAGAATAAGCGGAACTGTACCGGAAC
TCTTGCACGTGTCAATTCTAATTTAAAAAAGACCATCATTACAGCGAAAA
ACAAATTTCAGTAAAATATTTTCACCAGGAAACCAATCGACGCACtgatt
acatttttgaaaaacgtaTTCATCTGGAACTGTCAGAGCATGTttctttc
attgttttttttctaaagacatctcattttaaaaacatcaacaacaaaat
ttataaatatataaCCAAAATCAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014419XLOC_014419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025686-exon-sc0000542-1491911889:4220..5045TCONS_00025686-exon-sc0000542-1491911889:4220..5045Clytia hemisphaericaexon
TCONS_00025686-exon-sc0000542-1510915933:4220..5045TCONS_00025686-exon-sc0000542-1510915933:4220..5045Clytia hemisphaericaexon
TCONS_00025686-exon-sc0000542-1575043694:4220..5045TCONS_00025686-exon-sc0000542-1575043694:4220..5045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:4220..5045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1206.14	1284.45	1516.51	1511.31	1066.2	792.952	1426.1	1471.08	1983.37	1685.65	2097.01	2425.28	2235.56	2311.01	1975.95	1918.66	1727.64	1932.04	2060.55	1883.87	2026.08	1968.12	1285.12	1410.55	1419.11	1430.6	1592.39	1712.08	1208.6	1167.18
Blast
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BLAST of TCONS_00025686 vs. Swiss-Prot (Human)
Match: 1433G (14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.523e-41
Identity = 71/106 (66.98%), Postives = 86/106 (81.13%), Query Frame = -1 
Query:  275 RYLAEVGAPDSDERRNVIEEADGAYGKATDISKQKLKSTNPIRLGLALNYSVFHYEIKTDSSKACQLAKSAFDDAIAELDNLPEDSYKDSTLIMQLLRDNLTLWTS 592
            RYLAEV     ++R  V+E ++ AY +A +ISK+ ++ T+PIRLGLALNYSVF+YEI+    +AC LAK+AFDDAIAELD L EDSYKDSTLIMQLLRDNLTLWTS
Sbjct:  132 RYLAEVAT--GEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTS 235
The following BLAST results are available for this feature:
BLAST of TCONS_00025686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
1433G1.523e-4166.9814-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1... [more]
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