TCONS_00025677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025677
Unique NameTCONS_00025677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025677 ID=TCONS_00025677|Name=TCONS_00025677|organism=Clytia hemisphaerica|type=transcript|length=787bp
aggtaATGTAAAAACACAGAATCTCCACGGTTATGCGGTCAGGAATGCAG
AACTTGGAATGTTCAAACGCGAACGATGGACTGGCGATTCTAATAGACGT
GATTCGTacagatttgaaatttttaacctCCAAGAGAATGGTAAATATAT
GAGGTATTTTGGCAACTTTGATGTTTGCAAGAAAGCCGTAGTTGACGATC
TTCCTATTCTTGGTGATAATTACTTGAAGTTCTACCAGAAGGTCGATATG
GTTCAACTACCATGTGGCACAATCGAAGAGACCTGGAAACTACAAGATGG
TCGAATCAAATATGGAGATGAACTGTCAAAGCTCATTCAAGTTGTTCAAA
GAGTCAAGacgaCCCTGGACGCCACATCTCCTCAACATaagGATGAAGAA
GGTAATGAAGTCTTGATACCCACTGTCCTAACAATCGACAACGAATTCAA
AGATGGCTCCAGCAACAAACAGATGTGGCGTTCGCATTGGGTTGACCTTA
TCAAAGTTCCAAAATCCTTCTTCGATCTTCCGAAACATTGTTAGGGAATA
TAAAGGGAGGAACATCGAGACAACTCctgttttgaatttaaacactCTTC
TGTgattaatacaccttttcgactgtcttcgcgcggtcaggcgcgtgcca
cttaattatttaattatccccctaaactcaatccaatcattttttgaaac
atttttctattgcctctatgtgcgaaaaaaggactgggacggttttagta
aAGCGGACAGagaatgcccgcgcggcaattggcggct
Run BLAST on NCBI

protein sequence of TCONS_00025677-protein

>TCONS_00025677-protein ID=TCONS_00025677-protein|Name=TCONS_00025677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
GNVKTQNLHGYAVRNAELGMFKRERWTGDSNRRDSYRFEIFNLQENGKYM
RYFGNFDVCKKAVVDDLPILGDNYLKFYQKVDMVQLPCGTIEETWKLQDG
RIKYGDELSKLIQVVQRVKTTLDATSPQHKDEEGNEVLIPTVLTIDNEFK
DGSSNKQMWRSHWVDLIKVPKSFFDLPKHC
Run BLAST on NCBI

transcript from alignment at sc0000542:44005..47748-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025677 ID=TCONS_00025677|Name=TCONS_00025677|organism=Clytia hemisphaerica|type=transcript|length=3744bp|location=Sequence derived from alignment at sc0000542:44005..47748- (Clytia hemisphaerica)
AGGTAATGTAAAAACACAGAATCTCCACGGTTATGCGGTCAGGAATGCAG
AACTTGGAATGTTCAAACGCGAACGATGGACTGGCGATTCTAATAGACGT
GATTCGTACAGATTTGAAATTTTTAACCTCCAAGAGAATGGTAAATATAT
GAGGGTAAGTAAGTCAAATAGCTTACAATTGAATCGGGGAATGAGAGATG
TTTCGAATTATAGAGTGTAGTTTAAGAGGGTCTCTCCTTGACGGGGAATG
AGAGATGGTTCGAATTATAGAGTGTAGTTTAAGAGGGTCTCTCCTTGACG
GAGAATGAGAGATGTTTCGAATTATAGAGTGTAGTTTAAGAGGGTCCCTT
TTTGACGGGGACTGAGAGATGTTTCGAATTATAGAGTGAAGTTTAAGAGG
GTCTCTCCTTGACGGGGTATGAGAGATGTTTCGAATTATAGAGTGTAGTT
TAAGAGGGTCTCTCCTTGACAAGGACTGAGAGGTGATTCGAATTATAGAG
TGTAGTTTAAGAGGGTCTCTCCTTGACAAGGACTGAGAGATGTTTCGAAT
TATAGAGTGTAGTTTAAGAGGGGTTCTCCTTGACGGGGAATGAGAGATGT
TTCGAATTATAGAGTGTAGTTTAAGAGGGTCTCTCCTTGACGGGGAATGA
GAGATGGTTCGAATTATAGAGTGTAGTTTAAGAGGGTCTCTCCTTGACAA
GGACTGAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGTGTAGTTTAAGAGGGTCCCTCCTTGACGGGGACTGAGAGA
TGATTCGAATTATAGAGTGTAGTTTAAGAGGGTCCCTCCTTGACGGGGAC
TGAGAGATGTTTCGAATTATAGAGTGTAGTTTAAGAGGGTCCCTCCTTGA
CGGGGACTGAGAGATGTTTCAAATTATAGAGTGTAGTTTAAGAGGGTCCC
TCCTTGACGGGGACTGAGAGATGTTTCAAATTATAGAGTGTAGTTTAAGA
GGGTCCCTCCTTGACGGGGACTGAGAGATGTTTCAAATTATAGAGTGTAG
TTTAAGAGGGTCCCTCCTTGACGGGGACTGAGAGATGATTCGAATTATAG
AGTGTAGTTTAAGAGGGTCCCTCCTTGACGGGGACTGAGAGATGTTTCGA
CTTATAGAGTGTAGTTTAAGAGGGTCCCTCCTTGACGGGGACTGAGACAT
GTTTCGAATTATAGAGTGTAGTTTAAGAGGGTCTCTCCTTGACGGGGACT
GAGAGATGGTTCGAATTATAGAGTGTAGTTTAAGAGGGCCTCTCCTTGAC
GGGGACTGAGAGATGTTTCGAATTATAGAGTGTAGTTTAAGAGGGTCTCT
CCTTGACGGGGACTGAGAGATGGTTCGACTTATAGAGTGTAGTTTAAGAG
GGTCCCTCCTTGACGGGGACTGAGAGATGTTTCGAATTATAGAGTGTAGT
TTAAGAGGGTCTCTCCTTGACGGGGACTGAGAGATGATTCGAATTATAGA
GTGTAGTTTAAGAGGGTCTCTCCTTGACGGGGAATGAGAGATGTTTCGAA
TTATAGAGTGTAGTTTAAGAGGGTTTCTCCTTGACGGGGACTGAGAGATG
GTTCGAATTATAGAGTGTAGTTTAAGAGGGTCCCTCCTTGACGGGGACTG
AGAGATGGTTCGAATTGGTCACAATTGAGTGCATTTTCAAGCAATCTAGA
GCTCAAATTTTCAAAATTCCCCCCCTCGCGGTGTCATTAAACTTCAGCCC
CCCCCCCATTTTAAAAAGGCTTCCTACGGCACTGGTTGAGCTACGGGTCC
ATGTTGAACCCGAGGACTCAATCGCGCCTGTGTAGAGCTGGAAGTGAATT
CTTGTCTACTGACTGGACAGAGACGGTGCATTGGGTGAAATCAATTTCCA
CATTGCTAGTGTATTGGAATCGACCAACTACTACGCTAATGGAAGCTTGG
GCATGCAACCAGAGATATTAATTATGAATTTTGCAAATTGCAAAACACAA
TTTTACATTGTGTAATATTTTTCCTTTCCAGTATTTTGGCAACTTTGATG
TTTGCAAGAAAGCCGTAGTTGACGATCTTCCTATTCTTGGTGATAATTAC
TTGAAGTTCTACCAGAAGGTCGATATGGTTCAACTACCATGTGGCACAAT
CGAAGAGACCTGGAAACTACAAGATGGTCGAATCAAATATGGAGATGAAC
TGTCAAAGCTCATTCAAGTTGTTCAAAGAGTCAAGGTAAGATTTTGTACT
TTATGTTAAAGTTTTATGTTAAAAATCGCATTGCTTAGTGTTTTTTTCGC
TGAATTGAGCTAACTGAATTGGGCCATTCCAGAATTTGTACCCCCTTTGT
TGAGGAGATCTATTTTTAAACAGGTGATCCCCCCATGGATTTTTTTCCAA
TTTTTCTGGACCACCTTGGATTTTTTCTCCCAATTATTTAGACCATTTTT
TCAATTTTCAATCTGATTTTACTGACCGTACCACCCTGGATTTTTTTTTA
TTTTCCAGACGACCCTGGACGCCACATCTCCTCAACATAAGGTACAGACT
ATTTCTAAAATAGCCCATTGTAGCTTGTGATAAACATGGCCCCCGGCGTG
CGAATGGAATTGAGGGGGCCAAAAAAATATGTCGCCCACCATGGTTGGGC
GACGAAGAAAATTTTCGACTGTTCACCCTTATTTCACCCCTCTAAACGGT
ATATGTAAAATCTTTTAAAGTATAAAAAATTACTTTGCAAAATATTGGGG
GGGCCATGATAAAATAACGCATACCCCCCCCCCTCCCCTGTACGCAAGCA
TACGTTTTTAAGAAGACCCCCCTTCCCCCGTAGCGGTAGAAGCAATCTAA
TGTCACTTTACAAAAAAAGTGCTCTGAGCTTTTTCCAACACAGAAAGTGC
ATTTTTTGGGTCACCGATAAACCAGTTATCAGACATTTGCTCGTACAATA
TGGAAATATTTCACTCGTTCCGGATTTTTTCTTTTAATTATTACTTTTAG
GTTCCAAATAAACGGGGGGTTGGAAAATTTTCGAGATTTTAATAAGCGGG
AGGGAGCTAATTGCTAGTTGAAAATTGTACTTCTGAAAACCCAAAATAAG
GTAAATATAGGCTAAAATCAGGCTATTATGGGCAAATAAGGGGCCTTCTC
TTTGACAGCTGAAAATATTCTTAAAAATTTTCGAAAAGTTAACAAGGGGG
GGGGGGGGTCGTTTATTTTGAACCTAAGATTACATATTTCATTAACAGGA
TGAAGAAGGTAATGAAGTCTTGATACCCACTGTCCTAACAATCGACAACG
AATTCAAAGATGGCTCCAGCAACAAACAGATGTGGCGTTCGCATTGGGTT
GACCTTATCAAAGTTCCAAAATCCTTCTTCGATCTTCCGAAACATTGTTA
GGGAATATAAAGGGAGGAACATCGAGACAACTCCTGTTTTGAATTTAAAC
ACTCTTCTGTGATTAATACACCTTTTCGACTGTCTTCGCGCGGTCAGGCG
CGTGCCACTTAATTATTTAATTATCCCCCTAAACTCAATCCAATCATTTT
TTGAAACATTTTTCTATTGCCTCTATGTGCGAAAAAAGGACTGGGACGGT
TTTAGTAAAGCGGACAGAGAATGCCCGCGCGGCAATTGGCGGCT

Coding sequence (CDS) from alignment at sc0000542:44005..47748-

>TCONS_00025677 ID=TCONS_00025677|Name=TCONS_00025677|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0000542:44005..47748- (Clytia hemisphaerica)
GATGAAGAAGGTAATGAAGTCTTGATACCCACTGTCCTAACAATCGACAA
CGAATTCAAAGATGGCTCCAGCAACAAACAGATGTGGCGTTCGCATTGGG
TTGACCTTATCAAAGTTCCAAAATCCTTCTTCGATCTTCCGAAACATTGT
TAGACGACCCTGGACGCCACATCTCCTCAACATAAGTATTTTGGCAACTT
TGATGTTTGCAAGAAAGCCGTAGTTGACGATCTTCCTATTCTTGGTGATA
ATTACTTGAAGTTCTACCAGAAGGTCGATATGGTTCAACTACCATGTGGC
ACAATCGAAGAGACCTGGAAACTACAAGATGGTCGAATCAAATATGGAGA
TGAACTGTCAAAGCTCATTCAAGTTGTTCAAAGAGTCAAGGGTAATGTAA
AAACACAGAATCTCCACGGTTATGCGGTCAGGAATGCAGAACTTGGAATG
TTCAAACGCGAACGATGGACTGGCGATTCTAATAGACGTGATTCGTACAG
ATTTGAAATTTTTAACCTCCAAGAGAATGGTAAATATATGAGGGATGAAG
AAGGTAATGAAGTCTTGATACCCACTGTCCTAACAATCGACAACGAATTC
AAAGATGGCTCCAGCAACAAACAGATGTGGCGTTCGCATTGGGTTGACCT
TATCAAAGTTCCAAAATCCTTCTTCGATCTTCCGAAACATTGTTAGACGA
CCCTGGACGCCACATCTCCTCAACATAAGTATTTTGGCAACTTTGATGTT
TGCAAGAAAGCCGTAGTTGACGATCTTCCTATTCTTGGTGATAATTACTT
GAAGTTCTACCAGAAGGTCGATATGGTTCAACTACCATGTGGCACAATCG
AAGAGACCTGGAAACTACAAGATGGTCGAATCAAATATGGAGATGAACTG
TCAAAGCTCATTCAAGTTGTTCAAAGAGTCAAGGGTAATGTAAAAACACA
GAATCTCCACGGTTATGCGGTCAGGAATGCAGAACTTGGAATGTTCAAAC
GCGAACGATGGACTGGCGATTCTAATAGACGTGATTCGTACAGATTTGAA
ATTTTTAACCTCCAAGAGAATGGTAAATATATGAGGGATGAAGAAGGTAA
TGAAGTCTTGATACCCACTGTCCTAACAATCGACAACGAATTCAAAGATG
GCTCCAGCAACAAACAGATGTGGCGTTCGCATTGGGTTGACCTTATCAAA
GTTCCAAAATCCTTCTTCGATCTTCCGAAACATTGTTAGACGACCCTGGA
CGCCACATCTCCTCAACATAAGTATTTTGGCAACTTTGATGTTTGCAAGA
AAGCCGTAGTTGACGATCTTCCTATTCTTGGTGATAATTACTTGAAGTTC
TACCAGAAGGTCGATATGGTTCAACTACCATGTGGCACAATCGAAGAGAC
CTGGAAACTACAAGATGGTCGAATCAAATATGGAGATGAACTGTCAAAGC
TCATTCAAGTTGTTCAAAGAGTCAAGGGTAATGTAAAAACACAGAATCTC
CACGGTTATGCGGTCAGGAATGCAGAACTTGGAATGTTCAAACGCGAACG
ATGGACTGGCGATTCTAATAGACGTGATTCGTACAGATTTGAAATTTTTA
ACCTCCAAGAGAATGGTAAATATATGAGGGATGAAGAAGGTAATGAAGTC
TTGATACCCACTGTCCTAACAATCGACAACGAATTCAAAGATGGCTCCAG
CAACAAACAGATGTGGCGTTCGCATTGGGTTGACCTTATCAAAGTTCCAA
AATCCTTCTTCGATCTTCCGAAACATTGTTAGACGACCCTGGACGCCACA
TCTCCTCAACATAAGTATTTTGGCAACTTTGATGTTTGCAAGAAAGCCGT
AGTTGACGATCTTCCTATTCTTGGTGATAATTACTTGAAGTTCTACCAGA
AGGTCGATATGGTTCAACTACCATGTGGCACAATCGAAGAGACCTGGAAA
CTACAAGATGGTCGAATCAAATATGGAGATGAACTGTCAAAGCTCATTCA
AGTTGTTCAAAGAGTCAAGGGTAATGTAAAAACACAGAATCTCCACGGTT
ATGCGGTCAGGAATGCAGAACTTGGAATGTTCAAACGCGAACGATGGACT
GGCGATTCTAATAGACGTGATTCGTACAGATTTGAAATTTTTAACCTCCA
AGAGAATGGTAAATATATGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014414XLOC_014414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025677-exon-sc0000542-1575043694:47595..47748TCONS_00025677-exon-sc0000542-1575043694:47595..47748Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1575043694:45414..45617TCONS_00025677-exon-sc0000542-1575043694:45414..45617Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1575043694:45108..45140TCONS_00025677-exon-sc0000542-1575043694:45108..45140Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1575043694:44005..44400TCONS_00025677-exon-sc0000542-1575043694:44005..44400Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1510915933:47595..47748TCONS_00025677-exon-sc0000542-1510915933:47595..47748Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1510915933:45414..45617TCONS_00025677-exon-sc0000542-1510915933:45414..45617Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1510915933:45108..45140TCONS_00025677-exon-sc0000542-1510915933:45108..45140Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1510915933:44005..44400TCONS_00025677-exon-sc0000542-1510915933:44005..44400Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1491911889:47595..47748TCONS_00025677-exon-sc0000542-1491911889:47595..47748Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1491911889:45414..45617TCONS_00025677-exon-sc0000542-1491911889:45414..45617Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1491911889:45108..45140TCONS_00025677-exon-sc0000542-1491911889:45108..45140Clytia hemisphaericaexon
TCONS_00025677-exon-sc0000542-1491911889:44005..44400TCONS_00025677-exon-sc0000542-1491911889:44005..44400Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025677-proteinTCONS_00025677-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:44005..47748 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.17471	0.914609	0	0	0	0	0	0	5.76924	10.0773	0	0	0.339315	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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