TCONS_00025675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025675
Unique NameTCONS_00025675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025675 ID=TCONS_00025675|Name=TCONS_00025675|organism=Clytia hemisphaerica|type=transcript|length=858bp
TGATTAGAAATGGTTTTGTTACTCCGACTAAAGTAAAAGACTGGATTTTC
AAGTGCTTTTGAACTTGACACAATGATTCAATCGATGTCATTATTCAAAA
GAACAGACTAAAGTACATCTACAATGCATAAAGATGCTAAATGTGGTCTT
TAATATTGGTTGCGTTGTTAATTAaactttaagaaaaaacaaaatattac
cTTTCTgattatgttatctttttttagtAATTACTCAAAGTTTTCAGAAG
CATTGATAACAAAAGAATCAAAAGCAATGTCTAATAAAGTGTTTAAAACT
CCTGAGCAGCTCAAGACTCTGGAAAAATACTATTTAAACGGTATGACATC
TTATGGGAAAGACAATAAACACGGGTTGGAGTTGTTGGCTCAAGCTGTCG
AGGAAACTAATTTGTCCGAACAAATAGTGAAGGACTGGATTAGGAATAGA
AAGAAAGGACCTAGGGTGACAGAAAAAGTCAACATTCGAAAGCCCAGAGG
ATATGACTTTTTTAAGTCAGAATGGTTGAAGgTTAACGATGCAACGTTTA
GTGAAGCCAATTCGGCATGGAAAGAGTTGCCGGATGAggagaaaaatttt
tataaCGAAAAAGCCACTGATGCTGAAGAACCTGAGTTCAGCGCTATGCC
GTTGGAATGGCAAAGGAAAAAGATCAGGATGaccagaaaaaaaatcagta
acCTGGTTTGTCTGCTGAAGATAGGGCTTCAAAATCAGAGCGAAACGAAG
TTGCAAAGCTTTTGAACAAGAAGTTTAGCTCATTGAAAACAAGTCGAAAA
CGAGTCCCGTACAAGAGGATATGCAACGGTTCAGTGCAGGTTGTTGGCCT
GCCCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00025675-protein

>TCONS_00025675-protein ID=TCONS_00025675-protein|Name=TCONS_00025675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MLSFFSNYSKFSEALITKESKAMSNKVFKTPEQLKTLEKYYLNGMTSYGK
DNKHGLELLAQAVEETNLSEQIVKDWIRNRKKGPRVTEKVNIRKPRGYDF
FKSEWLKVNDATFSEANSAWKELPDEEKNFYNEKATDAEEPEFSAMPLEW
QRKKIRMTRKKISNLVCLLKIGLQNQSETKLQSF
Run BLAST on NCBI

transcript from alignment at sc0000542:157108..159357+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025675 ID=TCONS_00025675|Name=TCONS_00025675|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at sc0000542:157108..159357+ (Clytia hemisphaerica)
TGATTAGAAATGGTTTTGTTACTCCGACTAAAGTAAAAGACTGGATTTTC
AAGTGCTTTTGAACTTGACACAATGATTCAATCGATGTCATTATTCAAAA
GAACAGACTAAAGTACATCTACAATGCATAAAGATGCTAAATGTGGTCTT
TAATATTGGTTGCGTTGTTAATTAaactttaagaaaaaacaaaatattac
cTTTCTgattatgttatctttttttagtAATTACTCAAAGTTTTCAGAAG
CATTGATAACAAAAGAATCAAAAGCAATGTCTAATAAAGTGTTTAAAACT
CCTGAGCAGCTCAAGACTCTGGAAAAATACTATTTAAACGGTATGACATC
TTATGGGAAAGACAATAAACACGGGTTGGAGTTGTTGGCTCAAGCTGTCG
AGGAAACTAATTTGTCCGAACAAATAGTGAAGGTGAGGAGGACCTTATCC
CTTTTAATACTGGGAGTACATTTTTTTACCCCTATAAATTTTGATCTGGT
TGCACTTTTCTATGAAATTTAGCCCATACGATCCTTGTGTTATAAGAATA
TATTTGCTGAGTCAAAAATCCTTTTCTTATTTTAAGTAtttaaattacgg
tttaaacaaTATATTTGACATGAAAAACGAAATTGTACTGACAATGTGTC
AATTTTGATGACAGCTCattgtcagaaatgtcatcatactcaatgtgtga
aaactTTTAGGTGTCAAAATAGATTTTCAGGAAGTTTCATAAATATAGCA
GATAGCGTTATGGAAAGTTCGCTGAAGCTTAAAAGAGAGTTTATttaata
aatatataaataactttGATTCTTTTGTAGGACTGGATTAGGAATAGAAA
GAAAGGACCTAGGGTGACAGAAAAAGTCAACATTCGAAAGCCCAGAGGAT
ATGACTTTTTTAAGTCAGAATGGTTGAAGggtaatttttttaatactAGT
TATACTTATGACTTTGAACAATGCAATCTGAGACCAACTTTTCCTCTTTG
ATTTTAATTCCTCCCAATTAATATCCTTACCTGAAAACATTTAACCTGTT
TTTTACACATCCttcaataattattttaataAATTCTTATTCCTTGTACT
TGCTTTTTAATTTCAGTTAACGATGCAACGTTTAGTGAAGCCAATTCGGC
ATGGAAAGAGTTGCCGGATGAggagaaaaatttttataaCGAAAAAGCCA
CTGATGCTGAAGAACCTGAGTTCAGCGCTATGCCGTTGGAATGGCAAAGG
AAAAAGATCAGGATGaccagaaaaaaaatcagtaacCTGGTAATTcggaa
ttttattttaaatagtTCTTCGTGAAACAAGCCCTCCAGACTTTAGGAGT
TTTGATGAGTTCTTGTAAAGCACCTTTTTTTCCTTTCGCTTGAAAGTACA
TCATTTACTGATATAAAAGATAgcttaactttttgttttgatgtacaTTT
TCAGTGCAAGAATTGGAGAGTTATGGTATAGAGACCTTGGTGTTGGAAGC
CGATACAGTTAGGACTAGAAGAAAAGCGAACCATATTATGACATATGGTA
GCGACGCGGCTTTGGATTTTTCCGACGGACATACGGATTTGGACTGGGAC
TTTGCATCTTTCATTAATGGTTTGTACCATTATACAAATCAATTGATTAT
TCATTACAGTATTACTAACACTTTTTTATATTCCAGCCTTGAACTCAGTT
TATTTCTTTGTAATGAATTacaattttctatatttttccaGGTTTGTCTG
CTGAAGATAGGGCTTCAAAATCAGAGCGAAACGAAGTTGCAAAGCTTTTG
AACAAGAAGTTTAGTAAGTTATNTCGGAATGATAAGAATGGGCAGCgtga
atttcaaatcaaatggaTAGGGTATGCGGAAAAAACTTGGGTGGATGAAG
GCTCACTTGACCAGCACGTGATTAATAACTATCTTAGTTCCTTGTAATTA
TGTTGTTAATATActaactttttactttttatgagTCTTCTTCATTTATC
GCTTTgtcatttttcatatttgtcACGTATACCAGGTGTCCTGAAAAAAG
TTACTGTGCTGAAATTTGCTATCATGTGAATAAATNAAAgctattttcaa
tgtttttttttcaaataggtTGAATTTATACTTGgattgatttttgtgat
ttcaaTAATAACATTTTAGGCTCATTGAAAACAAGTCGAAAACGAGTCCC
GTACAAGAGGATATGCAACGGTTCAGTGCAGGTTGTTGGCCTGCCCGAAG

Coding sequence (CDS) from alignment at sc0000542:157108..159357+

>TCONS_00025675 ID=TCONS_00025675|Name=TCONS_00025675|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at sc0000542:157108..159357+ (Clytia hemisphaerica)
atgttatctttttttagtAATTACTCAAAGTTTTCAGAAGCATTGATAAC
AAAAGAATCAAAAGCAATGTCTAATAAAGTGTTTAAAACTCCTGAGCAGC
TCAAGACTCTGGAAAAATACTATTTAAACGGTATGACATCTTATGGGAAA
GACAATAAACACGGGTTGGAGTTGTTGGCTCAAGCTGTCGAGGAAACTAA
TTTGTCCGAACAAATAGTGAAGGACTGGATTAGGAATAGAAAGAAAGGAC
CTAGGGTGACAGAAAAAGTCAACATTCGAAAGCCCAGAGGATATGACTTT
TTTAAGTCAGAATGGTTGAAGgTTAACGATGCAACGTTTAGTGAAGCCAA
TTCGGCATGGAAAGAGTTGCCGGATGAggagaaaaatttttataaCGAAA
AAGCCACTGATGCTGAAGAACCTGAGTTCAGCGCTATGCCGTTGGAATGG
CAAAGGAAAAAGATCAGGATGaccagaaaaaaaatcagtaacCTGGTTTG
TCTGCTGAAGATAGGGCTTCAAAATCAGAGCGAAACGAAGTTGCAAAGCT
TTTGAatgttatctttttttagtAATTACTCAAAGTTTTCAGAAGCATTG
ATAACAAAAGAATCAAAAGCAATGTCTAATAAAGTGTTTAAAACTCCTGA
GCAGCTCAAGACTCTGGAAAAATACTATTTAAACGGTATGACATCTTATG
GGAAAGACAATAAACACGGGTTGGAGTTGTTGGCTCAAGCTGTCGAGGAA
ACTAATTTGTCCGAACAAATAGTGAAGGACTGGATTAGGAATAGAAAGAA
AGGACCTAGGGTGACAGAAAAAGTCAACATTCGAAAGCCCAGAGGATATG
ACTTTTTTAAGTCAGAATGGTTGAAGgTTAACGATGCAACGTTTAGTGAA
GCCAATTCGGCATGGAAAGAGTTGCCGGATGAggagaaaaatttttataa
CGAAAAAGCCACTGATGCTGAAGAACCTGAGTTCAGCGCTATGCCGTTGG
AATGGCAAAGGAAAAAGATCAGGATGaccagaaaaaaaatcagtaacCTG
GTTTGTCTGCTGAAGATAGGGCTTCAAAATCAGAGCGAAACGAAGTTGCA
AAGCTTTTGAatgttatctttttttagtAATTACTCAAAGTTTTCAGAAG
CATTGATAACAAAAGAATCAAAAGCAATGTCTAATAAAGTGTTTAAAACT
CCTGAGCAGCTCAAGACTCTGGAAAAATACTATTTAAACGGTATGACATC
TTATGGGAAAGACAATAAACACGGGTTGGAGTTGTTGGCTCAAGCTGTCG
AGGAAACTAATTTGTCCGAACAAATAGTGAAGGACTGGATTAGGAATAGA
AAGAAAGGACCTAGGGTGACAGAAAAAGTCAACATTCGAAAGCCCAGAGG
ATATGACTTTTTTAAGTCAGAATGGTTGAAGgTTAACGATGCAACGTTTA
GTGAAGCCAATTCGGCATGGAAAGAGTTGCCGGATGAggagaaaaatttt
tataaCGAAAAAGCCACTGATGCTGAAGAACCTGAGTTCAGCGCTATGCC
GTTGGAATGGCAAAGGAAAAAGATCAGGATGaccagaaaaaaaatcagta
acCTGGTTTGTCTGCTGAAGATAGGGCTTCAAAATCAGAGCGAAACGAAG
TTGCAAAGCTTTTGAatgttatctttttttagtAATTACTCAAAGTTTTC
AGAAGCATTGATAACAAAAGAATCAAAAGCAATGTCTAATAAAGTGTTTA
AAACTCCTGAGCAGCTCAAGACTCTGGAAAAATACTATTTAAACGGTATG
ACATCTTATGGGAAAGACAATAAACACGGGTTGGAGTTGTTGGCTCAAGC
TGTCGAGGAAACTAATTTGTCCGAACAAATAGTGAAGGACTGGATTAGGA
ATAGAAAGAAAGGACCTAGGGTGACAGAAAAAGTCAACATTCGAAAGCCC
AGAGGATATGACTTTTTTAAGTCAGAATGGTTGAAGgTTAACGATGCAAC
GTTTAGTGAAGCCAATTCGGCATGGAAAGAGTTGCCGGATGAggagaaaa
atttttataaCGAAAAAGCCACTGATGCTGAAGAACCTGAGTTCAGCGCT
ATGCCGTTGGAATGGCAAAGGAAAAAGATCAGGATGaccagaaaaaaaat
cagtaacCTGGTTTGTCTGCTGAAGATAGGGCTTCAAAATCAGAGCGAAA
CGAAGTTGCAAAGCTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014413XLOC_014413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025675-exon-sc0000542-1491911889:157108..157539TCONS_00025675-exon-sc0000542-1491911889:157108..157539Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1510915933:157108..157539TCONS_00025675-exon-sc0000542-1510915933:157108..157539Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1575043694:157108..157539TCONS_00025675-exon-sc0000542-1575043694:157108..157539Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1491911889:157938..158037TCONS_00025675-exon-sc0000542-1491911889:157938..158037Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1510915933:157938..158037TCONS_00025675-exon-sc0000542-1510915933:157938..158037Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1575043694:157938..158037TCONS_00025675-exon-sc0000542-1575043694:157938..158037Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1491911889:158224..158396TCONS_00025675-exon-sc0000542-1491911889:158224..158396Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1510915933:158224..158396TCONS_00025675-exon-sc0000542-1510915933:158224..158396Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1575043694:158224..158396TCONS_00025675-exon-sc0000542-1575043694:158224..158396Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1491911889:158849..158920TCONS_00025675-exon-sc0000542-1491911889:158849..158920Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1510915933:158849..158920TCONS_00025675-exon-sc0000542-1510915933:158849..158920Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1575043694:158849..158920TCONS_00025675-exon-sc0000542-1575043694:158849..158920Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1491911889:159277..159357TCONS_00025675-exon-sc0000542-1491911889:159277..159357Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1510915933:159277..159357TCONS_00025675-exon-sc0000542-1510915933:159277..159357Clytia hemisphaericaexon
TCONS_00025675-exon-sc0000542-1575043694:159277..159357TCONS_00025675-exon-sc0000542-1575043694:159277..159357Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025675-proteinTCONS_00025675-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:157108..159357 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.910967	0.964808	0.0754521	0.141136	2.81979	1.78283	1.57882	2.45966	1.9539	2.50681	2.2637	2.14977	1.19486	2.14631	1.18036	0.943547	1.80623	2.19048	1.24492	0.512738	2.00741	1.80765	0.862286	0.802882	1.57716	1.19927	0.277626	0.176501	0.208734	0.136525
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009071HMG_box_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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