TCONS_00025669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025669
Unique NameTCONS_00025669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025669 ID=TCONS_00025669|Name=TCONS_00025669|organism=Clytia hemisphaerica|type=transcript|length=933bp
AAATTAGCTGGGATCGGGATTGTCGGTTATCGGTGACTCTCAATCTTCGA
ATAACTTTATTTTTTAGCAAGAAGCTTCATATTATCCACggtataaaaaa
acattttataaaagatcaTCAATAAAAATGCATAAGTGTGAGGTTTGGTC
GGAGCCGTATCACACATATTTTCAACTAGCCTGTTTCGTTGGAGCTTTAA
CATATTTTTGCCCTAACAATTTAAAGGGGTTGATTGCGCTACGTTTGTTG
TTAGGGATGTCTGGTTTCTTGTTTTGCTTGTGGACAGGAACGATCATTTG
TGCGATAGATTCTTTCATCTATAATTTTATATTCGCTTTTGTGAATTTTG
GACACGTGGCTTATCTCTGCTATCAGATGCGCCCCGTTAAGTTCAAGGAA
GACGACCATGAAACATTATACAAAGCCGTCTTCGAACAGTTGGCCATCAA
ACGTTATCAATATAAACCGTTGGTGCAATGGGCGACAACTGTACGACTTT
CCAAGGGTGAATTTTATTCAGTGGAAAATGAAACACGTGGTGAGAAGATC
TCTATTATGTTGATTGGAAGATCTTggaaatttacaaaaaaggaATAAAA
CATGCCATTGTGAAGAAGAATGGGAAAGTTTTGCACAAGATCAAACCTTA
CGAGTTTTTGGATTCACCAGAATGGGTTCAAAGTACACAAGGGATTTTCG
CAGCTCCTGTCACTTTTGAGGTTTCAATCCAGTCTGAAGGTTGTACAATC
ATCTCGTGGAAACGCACAGATCTCATCCGAACCTTACGAAAACAACCTCT
CGTTAAAAACAAATTCAACTCCATCATTGGTCAAGATGTAGCAATGAAAC
TATTCAAAAGCAACAAACTTTTTGACCGCAATGACGAGAATAATAATGAA
TGCACGAGAGTTGATGTAAGACACTTGATGTAT
Run BLAST on NCBI

protein sequence of TCONS_00025669-protein

>TCONS_00025669-protein ID=TCONS_00025669-protein|Name=TCONS_00025669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MHKCEVWSEPYHTYFQLACFVGALTYFCPNNLKGLIALRLLLGMSGFLFC
LWTGTIICAIDSFIYNFIFAFVNFGHVAYLCYQMRPVKFKEDDHETLYKA
VFEQLAIKRYQYKPLVQWATTVRLSKGEFYSVENETRGEKISIMLIGRSW
KFTKKE
Run BLAST on NCBI

transcript from alignment at sc0000542:62849..66958+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025669 ID=TCONS_00025669|Name=TCONS_00025669|organism=Clytia hemisphaerica|type=transcript|length=4110bp|location=Sequence derived from alignment at sc0000542:62849..66958+ (Clytia hemisphaerica)
AAATTAGCTGGGATCGGGATTGTCGGTTATCGGTGACTCTCAATCTTCGA
ATAACTTTATTTTTTAGCAAGAAGCTTCATATTATCCACggtataaaaaa
acattttataaaagatcaTCAATAAAAATGCATAAGTGTGAGGTTTGGTC
GGAGCCGTATCACACATATTTTCAACTAGCCTGTTTCGTTGGAGCTTTAA
CATATTTTTGCCCTAACAATTTAAAGGGGTTGATTGCGCTACGTTTGTTG
TTAGGGATGTCTGGTTTCTTGTTTTGCTTGTGGACAGGAACGATCATTTG
TGCGATAGATTCTTTCATCTATAATTTTATATTCGCTTTTGTGAATTTTG
GACACGTGGCTTATCTCTGCTATCAGATGCGCCCCGTTAAGGTGAGTagg
tcttttcataaattattttaagtTCAACAACcgcctcgttttgaaatcat
tgccAAGGTGAACCTCGCAAACATATATATGCCCTATAGGAATCAATTAg
cttatcaaaattttgaaacgaGACATGTGGTTTATCTCTGCTATCAAATG
CGCCCAATTAAAGTAAGTAGCCACATATCTCATTCCTTTGCACACTAGAA
GGGCCTACTGGGTGAATGCATTCAAACAAACTACTGAGAGCCCCTTTAGG
TAATATAGAGCTCATAGATAATTATGACTTGGGTagttcaagaaattttt
ttttgtgaattgggctattccagaagaagaaaatttactCCCCATGTTGA
GGAGGTCATTTTTGGAAGGCAAAACCCCGTCGATTTTTGCCAACATATTC
acgaccccctggatttttaagccaattttttaGCTACCGCCTtggatttt
tgctgaaaattcaGGGACCCCCTtgattatttatatattttcattgaCCC
GCCCAATGGATTTACTTTGTTTTTAAGGGGTACCCCCCTGGAATTTCCAA
CTTTCCAGACCCCCCCCCTGGATGTCACACCTTCCTCAACATTCTGCAAT
ATTCTATTATCACAATTACTTCTTTTAAGTTCAAGGAAGACGACCATGAA
ACATTATACAAAGCCGTCTTCGAACAGTTGGCCATCAAACGTTATCAATA
TAAACCGTTGGTGCAATGGGCGACAACTGTACGACTTTCCAAGGGTGAAT
TTTATTCAGTGGAAAATGAAACACGTGGTGAGAAGATCTCTATTATGTTG
ATTGGAAGGTAAGTTTGGCACAATGTTATTTCGATGTCAAACTACTCTCA
GGTGtcctaataaacgcccctcccccCGCGTTAGtacatttttcaatatt
tttccaaCTCCCCGGAACTTCTTAGGACCCCCACAAACtattattgattt
ttgaagatattttcaggtGTCAAAAGAAGAGTcctttattttgctctaaa
tagccagGTTTTCATTGTATAATTACCTTTTTTTTGGGCGGGAGGGGGGT
ATTTAGAGGTACAAATTCCAATGCCCTCGTTTAttagaatttaaagattt
tctaaCCCTCCTCCCACTTTTTTTCCGACCTCCGCTCCGTTTATTAGACA
CCTGAGAGTTTAGTTCATAGCATCAATTTTACCTTAGATGAACGCTTATT
CAAAGTGGTCAAGGCAAGGTATTTTTTTTGTCTAAGACAGAGAATAGATT
TTATACAGCAAATTAGTAcatattcttgaaaattttggtgaattatgcaa
GGTTTTGAAACGGAAAAGTCTTTTCAAATACTTCGCTGTAGCTCTAATGA
ATATATTCAAAACTCAAGACTTGTTATTTTAGATCTTggaaatttacaaa
aaaggaATAAAACAGTAAGAGCCCGAGCGcacacttttctttttattaaa
cacccctttctcacggTCCCGGTGGAACCTCTTCCTACAATGCGGGtgaa
aatttttatcgaaataCCAATGGGGAAAAAAATTCGTTTGTTCTGAGGTA
AAAAAATCCAGCGCGGATGATTTTTGAGTGCAATTCTTTCAAATTTGGAT
GAGAACAAAGTGAATCTTCTTGTGGGGCTGATGAACTTGTGTGGTATTTT
TctcaccggggacaaaatttggcCTAAATTTCCAATGGAGCAGGGGtgcc
agcgggtctgtgacaaagGGGTGTAAATTAGgtgaaagaaattaaatttg
ctGTTCTTCAGGTTTCTACCAAAAATTATGGGTCGGTTGGTTGGTATTCG
GGATtgaattttattcaaaagtactcgaaatatttttactcATATAATGT
TGTCGAACACACCACTTTAGGAGTTCTCTtacaaaatgcaatttttcctc
GTATCTGtagaaatttaattttagttttttttttcaaaacttccagttaa
atcagggtcggtcgggcctgTAGAGCAACAAATTTAGTTTATTTTGCCTA
AGGCTGGAAACTTTTCATTTCCTATCTCcccaacgtttatttaacgtcca
tataacgttagatgaacgttgaaacagcgttgtgtgtcagctgggtcgca
aaaaaaaaggaaacgtGTACTAGAGTCAGatgcaaaaattcaaattattg
cCTAAAACCATAAACATACTAAAACCCACTCTGATAAATGGTTTATAAGG
TACTATATTTGGGTTCTgcgaaaaaatttaacaaaaatgtcCCATCTTTT
GATCTAAGGTCACAAGGCGCTCATAGATTAATTTTCTAATTAAGTTTCTC
CTGTTAATGTGGATGATCTAAGGTCACAAGGTGGTCATATAATTTCTAAT
TAAATTTGTCTTGCTAATCTGGAAATTCGATTACAATTGTACATTACATG
GAATATTGACATCTCTCTCAAATAAAATTCTAAAAGGTTACAGCAAAAAA
CCGGTTCCTCTAACCAGTGAGTGGTAATAACTGATAGCTGAGAGTAACAG
ATTTTCAAGCTAAGAGCTGTGTGTGCAAGAAAGAAAACTGGTATACTACT
GGTTGGGTGTAAGTAATGTATGAGATGTCAGAGAAATATTAACATCGCtc
tcaaaaattcaaacaaaaaaccTGTTCTGGTAGCCAGTGAGTGAAAAGAC
TGCTGataataataaattttcaaGATGGAACTGCTTGACAGGGCAAAAAC
TGGTACCTTACCGGTTGTCTGTAAGTAAAATATGAGATGTAATAAATAAG
AATTCAAATGGAAACAAGTCTTACTGGTGCATGTGAAAGGCGTGCAAAAG
GTATTCCttcttttaaagaaattatGAAAGGATTCCAAGTACTTGTTTTA
CTGGTATGTCAGGTAGGTTGAAAGatcaatggaaaattgttttgagAGAA
CAAAACCTGGGAATATTCTAATAAGTttaaatgggaaaaaatataaaaat
aatttctacAGTTGTCcctctctaatttgatcttgAAGGGACATTTGACT
AGAATTTCTTTCTAGTtgtcaaattattttaaagattcattattctcaaa
aattttcttttctacagTGCCATTGTGAAGAAGAATGGGAAAGTTTTGCA
CAAGATCAAACCTTACGAGTTTTTGGATTCACCAGAATGGGTTCAAAGTA
CACAAGGGATTTTCGCAGCTCCTGTCACTTTTGAGGTTACATTAACCTAC
TTCAAGTTATTACTGTAAAagtcaaacaataaaaaacatgccttgtccag
ggggtaaagttgCTCTGCTTGGGGGTAATTCTCTTGTTTGAGGGTGATTG
TCCATgaggtcaactgatgcttgtccagggggttagacctgctctccggg
ggtcaaaagtcacaatgtccggtgggtaaatatccaaaaaatgtcatatc
CTCCACCCaccatattcaaattttctggaaaagcccattccaCGCGAGGA
CACGTGCGTTTTAGTTTGGAAATAAGCTAACTGCTCTCTATTTTTAGGTT
TCAATCCAGTCTGAAGGTTGTACAATCATCTCGTGGAAACGCACAGATCT
CATCCGAACCTTACGAAAACAACCTCTCGTTAAAAACAAATTCAACTCCA
TCATTGGTCAAGATGTAGCAATGAAACTATTCAAAAGCAACAAACTTTTT
GACCGCAATGACGAGAATAATAATGAATGCACGAGAGTTGATGTAAGACA
CTTGATGTAT

Coding sequence (CDS) from alignment at sc0000542:62849..66958+

>TCONS_00025669 ID=TCONS_00025669|Name=TCONS_00025669|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000542:62849..66958+ (Clytia hemisphaerica)
ATGCATAAGTGTGAGGTTTGGTCGGAGCCGTATCACACATATTTTCAACT
AGCCTGTTTCGTTGGAGCTTTAACATATTTTTGCCCTAACAATTTAAAGG
GGTTGATTGCGCTACGTTTGTTGTTAGGGATGTCTGGTTTCTTGTTTTGC
TTGTGGACAGGAACGATCATTTGTGCGATAGATTCTTTCATCTATAATTT
TATATTCGCTTTTGTGAATTTTGGACACGTGGCTTATCTCTGCTATCAGA
TGCGCCCCGTTAAGTTCAAGGAAGACGACCATGAAACATTATACAAAGCC
GTCTTCGAACAGTTGGCCATCAAACGTTATCAATATAAACCGTTGGTGCA
ATGGGCGACAACTGTACGACTTTCCAAGGGTGAATTTTATTCAGTGGAAA
ATGAAACACGTGGTGAGAAGATCTCTATTATGTTGATTGGAAGATCTTgg
aaatttacaaaaaaggaATAAATGCATAAGTGTGAGGTTTGGTCGGAGCC
GTATCACACATATTTTCAACTAGCCTGTTTCGTTGGAGCTTTAACATATT
TTTGCCCTAACAATTTAAAGGGGTTGATTGCGCTACGTTTGTTGTTAGGG
ATGTCTGGTTTCTTGTTTTGCTTGTGGACAGGAACGATCATTTGTGCGAT
AGATTCTTTCATCTATAATTTTATATTCGCTTTTGTGAATTTTGGACACG
TGGCTTATCTCTGCTATCAGATGCGCCCCGTTAAGTTCAAGGAAGACGAC
CATGAAACATTATACAAAGCCGTCTTCGAACAGTTGGCCATCAAACGTTA
TCAATATAAACCGTTGGTGCAATGGGCGACAACTGTACGACTTTCCAAGG
GTGAATTTTATTCAGTGGAAAATGAAACACGTGGTGAGAAGATCTCTATT
ATGTTGATTGGAAGATCTTggaaatttacaaaaaaggaATAAATGCATAA
GTGTGAGGTTTGGTCGGAGCCGTATCACACATATTTTCAACTAGCCTGTT
TCGTTGGAGCTTTAACATATTTTTGCCCTAACAATTTAAAGGGGTTGATT
GCGCTACGTTTGTTGTTAGGGATGTCTGGTTTCTTGTTTTGCTTGTGGAC
AGGAACGATCATTTGTGCGATAGATTCTTTCATCTATAATTTTATATTCG
CTTTTGTGAATTTTGGACACGTGGCTTATCTCTGCTATCAGATGCGCCCC
GTTAAGTTCAAGGAAGACGACCATGAAACATTATACAAAGCCGTCTTCGA
ACAGTTGGCCATCAAACGTTATCAATATAAACCGTTGGTGCAATGGGCGA
CAACTGTACGACTTTCCAAGGGTGAATTTTATTCAGTGGAAAATGAAACA
CGTGGTGAGAAGATCTCTATTATGTTGATTGGAAGATCTTggaaatttac
aaaaaaggaATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014410XLOC_014410Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025669-proteinTCONS_00025669-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025669-exon-sc0000542-1491911889:62849..63239TCONS_00025669-exon-sc0000542-1491911889:62849..63239Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1510915933:62849..63239TCONS_00025669-exon-sc0000542-1510915933:62849..63239Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1575043694:62849..63239TCONS_00025669-exon-sc0000542-1575043694:62849..63239Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1491911889:63878..64056TCONS_00025669-exon-sc0000542-1491911889:63878..64056Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1510915933:63878..64056TCONS_00025669-exon-sc0000542-1510915933:63878..64056Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1575043694:63878..64056TCONS_00025669-exon-sc0000542-1575043694:63878..64056Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1491911889:64631..64662TCONS_00025669-exon-sc0000542-1491911889:64631..64662Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1510915933:64631..64662TCONS_00025669-exon-sc0000542-1510915933:64631..64662Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1575043694:64631..64662TCONS_00025669-exon-sc0000542-1575043694:64631..64662Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1491911889:66316..66433TCONS_00025669-exon-sc0000542-1491911889:66316..66433Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1510915933:66316..66433TCONS_00025669-exon-sc0000542-1510915933:66316..66433Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1575043694:66316..66433TCONS_00025669-exon-sc0000542-1575043694:66316..66433Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1491911889:66746..66958TCONS_00025669-exon-sc0000542-1491911889:66746..66958Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1510915933:66746..66958TCONS_00025669-exon-sc0000542-1510915933:66746..66958Clytia hemisphaericaexon
TCONS_00025669-exon-sc0000542-1575043694:66746..66958TCONS_00025669-exon-sc0000542-1575043694:66746..66958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:62849..66958 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.402217	0.764561	0	0.217126	0.726907	0.469973	1.197	1.35654	0.755948	0.626141	0	0.47804	0.39108	0	0.334677	0.311967	0.772504	0.609897	0	0	0.28427	0.485299	3.42325	3.29171	3.62418	2.67274	20.7969	19.0818	0.414475	1.10827
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006916Popeye_prot
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00025669 vs. Swiss-Prot (Human)
Match: POPD3 (Popeye domain-containing protein 3 OS=Homo sapiens GN=POPDC3 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.061e-18
Identity = 31/88 (35.23%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:  610 VKKNGKVLHKIKPYEFLDSPEWVQ---STQGIFAAPVTFEVSIQSEGCTIISWKRTDLIRTLRKQPLVKNKFNSIIGQDVAMKLFKSN 864
            V  +G+ LH I P +FLDSPEW     + +GIF   +T E       C  +SW+R  L     +   +   F+ +IG D+A KL+  N
Sbjct:  165 VTVDGEFLHYIFPLQFLDSPEWDSLRPTEEGIFQVTLTAETD-----CRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALN 247

HSP 2 Score: 53.5286 bits (127), Expect = 1.061e-18
Identity = 29/104 (27.88%), Postives = 56/104 (53.85%), Query Frame = 2 
Query:  263 GFL-FCLWTGTIICAIDSFIYNFIFAFVNFGHVAYLCYQMRPVKFKEDDHETLYKAVFEQLAIKRYQYKPLVQWATTVRLSKGEFYSVENETRGEKISIMLIGR 571
            GFL   +W    +CA D F +NF+   + F    ++ YQ+R + F   + + LY ++F+ L I    ++ +   +  V L K   Y+++ +T  +K+S+++ GR
Sbjct:   60 GFLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAR-EFQVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGR 162
The following BLAST results are available for this feature:
BLAST of TCONS_00025669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POPD31.061e-1835.23Popeye domain-containing protein 3 OS=Homo sapiens... [more]
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