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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025506 ID=TCONS_00025506|Name=TCONS_00025506|organism=Clytia hemisphaerica|type=transcript|length=2037bp
ATTTTTATTGAtggttatttttttttcatgggATCGAGTTTCGTTAAATA
TTTTGTCTGCTCGTAAAAAATGTTGCAAGGAAAAGCCATCTGAACAAACG
AAGATACTTACCACCAAATCATCGAAATATTAATTCCTTTTACGTTTATG
AACATGTCAGTCAGtataaaagaaattgaattACCAAACCAACTGGAGGG
TTGACAGTTGACAAAGGAAGATGGAGGATCGTCAAACAGAATGGAAAGCC
AAACGAAAACGAACCTATATCGCTTTCTGTGTCGTCACATTTGGCTTAGG
ACTAGAGTACTCATTAGTCTTTCCTAGCCTGTGGTTTTACATTAATAACA
TTATCCAGGCTGACTACCCTAAATTGTTTTATGGTAGCGCACTCTCTGCT
TATCCACTTGCGAGCATCATTGGAGCTTTCACTATCGGCAGATACGTCGA
TCGAACTCGAAAAGCAAAACAAGTTCTCATTTTATTATTGATCTGTGAAA
TCTTTGGCAATCTGCTTTATTCCTTGTATTTTTCACCATGGTGTCCATTT
TTCGGACGTTTACTATCTGGATTTGGTGATGTCTGCAATATGATTATAAC
AGGAGAAATTGCTCGATCCTACCCCAAGAACGAGATCACCAAAAAGCTTT
CACTGGTTGTCATGACATTTTCATGCGGTTTCATCATCGCACCGGGAGCA
AACATTCTCTTCGGAGATGTCAGGTTTTCCGTATTTAATTTTTGGATAAC
ATACGGAAACATTCCGGGATTGTTAATGGCTTTCGTTTTCACTATTGTTT
TAAGTGTGGTCACTTTTCTTGTCCATGATATTTCACGTGAGTTTGACCTC
AAACAAAACCAAGAGAATAGTCAAAGTTACGAAGATCGGGAAATGAAAAA
CTTTGATGAGATAAGTGATAGCGAAAAAAGCAGTTTGATTGTAGAAGACA
TAGAACCAAGTTCGATGGATAGTAAGGAAGAAATGAACCATTTACAAACA
TTGGGTCTCATACTAAAGCAACCAGATTTATTACTCCTACTTTCATTCAC
TTTTGTTGCTTCCTATATTCTTTTCGGATTTGACACATTATTATCACTTA
TCGGCTCACGGTACTTTGGTTTCAGTGTCAAGGTAACAAGCCTCATTTTC
ATTATAGATGGAGGCATTTATTTTGTTGTACTCTGGTTGCTTGGATACGC
TTCTAAAAGATGCACCGACTATCACGCTATTGTGATGTCATTCTCAATTC
TATTTGCTGGATTAGCAGCAATTTTCGTGCTCGCTTTACAAGAAGTCACA
AATGTGGTTCTGAAGTATAGCCTCCTGATTGTTTACTTACTAGCGTTCAG
CTCAACATGGACTATCGAGGAAGTATTATCACGGTCATTATTTTCGAAAC
TGGTTCCATCATGGTGTCAAAATTACGCTGAAGGCGTCCGCCGCTCTGTC
AGCTCGGCCGCTTTCATAATCTCAGGTGTGACGTCATCAGGTCTGTTTGA
CAACCTACAATATTTGAGTTTGGCGTTGCTATTGGTTTCATTTACGTTGC
TGGTACTTttcatttcaagaaaaaaagttcTCGTTAACCCAACGTCTTTG
TTTTGAGGTATCTTGCAAGGTAGACTAACAAACTAGTCTGCTAATTAatt
catgtcagagggcgggaacataaaggcggcgggcgtttgcttgaatagga
gctgcgtaggagaacgagaaAAAGTTGgcgagaggctgctgattaacagc
tttcagcccttgccgccgacgaaacttcttcctacgcttacttAACTCCT
ACAcccacttttcccgcgtgataccgttccagcccgactggcgtgtcAGT
CTACTTGCAAGGCTTTAACTGAACCGGAATTTTATGCAATATCTAACGGG
AAATttgtcataaaattttattcttGTCTATTCAGTTATTTACATACTTT
CATGATATGTATAGCTagtgaattttatttttggtagGTAGTGATTTTCA
TTTaggtttaaaaattatattttggtaAAGAAATAAA Run BLAST on NCBI protein sequence of TCONS_00025506-protein >TCONS_00025506-protein ID=TCONS_00025506-protein|Name=TCONS_00025506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
MEDRQTEWKAKRKRTYIAFCVVTFGLGLEYSLVFPSLWFYINNIIQADYP
KLFYGSALSAYPLASIIGAFTIGRYVDRTRKAKQVLILLLICEIFGNLLY
SLYFSPWCPFFGRLLSGFGDVCNMIITGEIARSYPKNEITKKLSLVVMTF
SCGFIIAPGANILFGDVRFSVFNFWITYGNIPGLLMAFVFTIVLSVVTFL
VHDISREFDLKQNQENSQSYEDREMKNFDEISDSEKSSLIVEDIEPSSMD
SKEEMNHLQTLGLILKQPDLLLLLSFTFVASYILFGFDTLLSLIGSRYFG
FSVKVTSLIFIIDGGIYFVVLWLLGYASKRCTDYHAIVMSFSILFAGLAA
IFVLALQEVTNVVLKYSLLIVYLLAFSSTWTIEEVLSRSLFSKLVPSWCQ
NYAEGVRRSVSSAAFIISGVTSSGLFDNLQYLSLALLLVSFTLLVLFISR
KKVLVNPTSLF Run BLAST on NCBI transcript from alignment at sc0000538:60461..63343- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025506 ID=TCONS_00025506|Name=TCONS_00025506|organism=Clytia hemisphaerica|type=transcript|length=2883bp|location=Sequence derived from alignment at sc0000538:60461..63343- (Clytia hemisphaerica)
ATTTTTATTGATGGTTATTTTTTTTTCATGGGATCGAGTTTCGTTAAATA
TTTTGTCTGCTCGTAAAAAATGTTGCAAGGAAAAGCCATCTGAACAAACG
AAGATACTTACCACCAAATCATCGAAATATTAATTCCTTTTACGTTTATG
AACATGTCAGTCAGTATAAAAGAAATTGAATTACCAAACCAACTGGAGGT
GAGTTACCTTTACAATTTTCTGATAATTTTGGGTGACAGGAGGGATGGGG
CAGTGAGTTTACCAACTGACAGCGGTATATATGTCGAAAAATTCGGCTTT
TAAAACCGTACGCTTATCAAAAAAATCAGTGAAATTCGTACCCTTACAGT
GTATTTTTCTCAAATTTTCAACTCTTTCAGAGCTAAATTAAATAGTTAAA
ATCTTTGAGCAAGAATCTACAATTTTTCCTTGACTTGATAATGTTCACCC
TTACAGTGCATTTAACAAAATTCCACCCTTATAGTGCATTTCTGCTATCT
TGAAAAACATATCCTTAACCACCGTACATACCTGTCGGTCAATTTGCCTG
ACTGCATCCCCGGGTTTGACGATCAATGATGTACCAGATGCACCACAAAA
AAGTTTTTTTCTTTTCGACGACAACAAAAATAATTGTCTGTAAAAAAATA
TTCTGTAGAGCCCAAAAACAGAAACTCTAACAGCTTTATAATTTTATTTG
ATAATTTCCATAGTCGAATGTCTCAATCTGGACGTGGTACGCAATGTTAT
GCTAAATAAAAATTTATTAAGAATCAGTAGATTTTTTTCAAATTCAAAAG
TAAGAAAGGGTAAAAAATTCACATTCTTACATGATGCAATTCTTGGGATA
TCGTTTAATCATAATTTCGCCGTAGGTTGCAAAATATCTATTTTGCTTTT
AATTCTTTATTCTAAGACGTGAACATTATACACGATTATTCGAATTCCGA
TACCACGAAGCTGTGGGAAATGTCTTTTCCTCTTCCCGTTTAACTTCCGA
AAATATCTCATTAAGTAAGATTTCTTTCTGTTTTCATTCAACAGGGTTGA
CAGTTGACAAAGGAAGATGGAGGATCGTCAAACAGAATGGAAAGCCAAAC
GAAAACGAACCTATATCGCTTTCTGTGTCGTCACATTTGGCTTAGGACTA
GAGTACTCATTAGTCTTTCCTAGCCTGTGGTTTTACATTAATAACATTAT
CCAGGCTGACTACCCTAAATTGTTTTATGGTAGCGCACTCTCTGCTTATC
CACTTGCGAGCATCATTGGAGCTTTCACTATCGGCAGATACGTCGATCGA
ACTCGAAAAGCAAAACAAGTTCTCATTTTATTATTGATCTGTGAAATCTT
TGGCAATCTGCTTTATTCCTTGTATTTTTCACCATGGTGTCCATTTTTCG
GACGTTTACTATCTGGATTTGGTGATGTCTGCAATATGATTATAACAGGA
GAAATTGCTCGATCCTACCCCAAGAACGAGATCACCAAAAAGCTTTCACT
GGTTGTCATGACATTTTCATGCGGTTTCATCATCGCACCGGGAGCAAACA
TTCTCTTCGGAGATGTCAGGTTTTCCGTATTTAATTTTTGGATAACATAC
GGAAACATTCCGGGATTGTTAATGGCTTTCGTTTTCACTATTGTTTTAAG
TGTGGTCACTTTTCTTGTCCATGATATTTCACGTGAGTTTGACCTCAAAC
AAAACCAAGAGAATAGTCAAAGTTACGAAGATCGGGAAATGAAAAACTTT
GATGAGATAAGTGATAGCGAAAAAAGCAGTTTGATTGTAGAAGACATAGA
ACCAAGTTCGATGGATAGTAAGGAAGAAATGAACCATTTACAAACATTGG
GTCTCATACTAAAGCAACCAGATTTATTACTCCTACTTTCATTCACTTTT
GTTGCTTCCTATATTCTTTTCGGATTTGACACATTATTATCACTTATCGG
CTCACGGTACTTTGGTTTCAGTGTCAAGGTAACAAGCCTCATTTTCATTA
TAGATGGAGGCATTTATTTTGTTGTACTCTGGTTGCTTGGATACGCTTCT
AAAAGATGCACCGACTATCACGCTATTGTGATGTCATTCTCAATTCTATT
TGCTGGATTAGCAGCAATTTTCGTGCTCGCTTTACAAGAAGTCACAAATG
TGGTTCTGAAGTATAGCCTCCTGATTGTTTACTTACTAGCGTTCAGCTCA
ACATGGACTATCGAGGAAGTATTATCACGGTCATTATTTTCGAAACTGGT
TCCATCATGGTGTCAAAATTACGCTGAAGGCGTCCGCCGCTCTGTCAGCT
CGGCCGCTTTCATAATCTCAGGTGTGACGTCATCAGGTCTGTTTGACAAC
CTACAATATTTGAGTTTGGCGTTGCTATTGGTTTCATTTACGTTGCTGGT
ACTTTTCATTTCAAGAAAAAAAGTTCTCGTTAACCCAACGTCTTTGTTTT
GAGGTATCTTGCAAGGTAGACTAACAAACTAGTCTGCTAATTAATTCATG
TCAGAGGGCGGGAACATAAAGGCGGCGGGCGTTTGCTTGAATAGGAGCTG
CGTAGGAGAACGAGAAAAAGTTGGCGAGAGGCTGCTGATTAACAGCTTTC
AGCCCTTGCCGCCGACGAAACTTCTTCCTACGCTTACTTAACTCCTACAC
CCACTTTTCCCGCGTGATACCGTTCCAGCCCGACTGGCGTGTCAGTCTAC
TTGCAAGGCTTTAACTGAACCGGAATTTTATGCAATATCTAACGGGAAAT
TTGTCATAAAATTTTATTCTTGTCTATTCAGTTATTTACATACTTTCATG
ATATGTATAGCTAGTGAATTTTATTTTTGGTAGGTAGTGATTTTCATTTA
GGTTTAAAAATTATATTTTGGTAAAGAAATAAA Coding sequence (CDS) from alignment at sc0000538:60461..63343- >TCONS_00025506 ID=TCONS_00025506|Name=TCONS_00025506|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000538:60461..63343- (Clytia hemisphaerica)
ATGGAGGATCGTCAAACAGAATGGAAAGCCAAACGAAAACGAACCTATAT
CGCTTTCTGTGTCGTCACATTTGGCTTAGGACTAGAGTACTCATTAGTCT
TTCCTAGCCTGTGGTTTTACATTAATAACATTATCCAGGCTGACTACCCT
AAATTGTTTTATGGTAGCGCACTCTCTGCTTATCCACTTGCGAGCATCAT
TGGAGCTTTCACTATCGGCAGATACGTCGATCGAACTCGAAAAGCAAAAC
AAGTTCTCATTTTATTATTGATCTGTGAAATCTTTGGCAATCTGCTTTAT
TCCTTGTATTTTTCACCATGGTGTCCATTTTTCGGACGTTTACTATCTGG
ATTTGGTGATGTCTGCAATATGATTATAACAGGAGAAATTGCTCGATCCT
ACCCCAAGAACGAGATCACCAAAAAGCTTTCACTGGTTGTCATGACATTT
TCATGCGGTTTCATCATCGCACCGGGAGCAAACATTCTCTTCGGAGATGT
CAGGTTTTCCGTATTTAATTTTTGGATAACATACGGAAACATTCCGGGAT
TGTTAATGGCTTTCGTTTTCACTATTGTTTTAAGTGTGGTCACTTTTCTT
GTCCATGATATTTCACGTGAGTTTGACCTCAAACAAAACCAAGAGAATAG
TCAAAGTTACGAAGATCGGGAAATGAAAAACTTTGATGAGATAAGTGATA
GCGAAAAAAGCAGTTTGATTGTAGAAGACATAGAACCAAGTTCGATGGAT
AGTAAGGAAGAAATGAACCATTTACAAACATTGGGTCTCATACTAAAGCA
ACCAGATTTATTACTCCTACTTTCATTCACTTTTGTTGCTTCCTATATTC
TTTTCGGATTTGACACATTATTATCACTTATCGGCTCACGGTACTTTGGT
TTCAGTGTCAAGGTAACAAGCCTCATTTTCATTATAGATGGAGGCATTTA
TTTTGTTGTACTCTGGTTGCTTGGATACGCTTCTAAAAGATGCACCGACT
ATCACGCTATTGTGATGTCATTCTCAATTCTATTTGCTGGATTAGCAGCA
ATTTTCGTGCTCGCTTTACAAGAAGTCACAAATGTGGTTCTGAAGTATAG
CCTCCTGATTGTTTACTTACTAGCGTTCAGCTCAACATGGACTATCGAGG
AAGTATTATCACGGTCATTATTTTCGAAACTGGTTCCATCATGGTGTCAA
AATTACGCTGAAGGCGTCCGCCGCTCTGTCAGCTCGGCCGCTTTCATAAT
CTCAGGTGTGACGTCATCAGGTCTGTTTGACAACCTACAATATTTGAGTT
TGGCGTTGCTATTGGTTTCATTTACGTTGCTGGTACTTTTCATTTCAAGA
AAAAAAGTTCTCGTTAACCCAACGTCTTTGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025506-exon-sc0000538-1575043694:63146..63343 | TCONS_00025506-exon-sc0000538-1575043694:63146..63343 | Clytia hemisphaerica | exon |
| TCONS_00025506-exon-sc0000538-1575043694:60461..62299 | TCONS_00025506-exon-sc0000538-1575043694:60461..62299 | Clytia hemisphaerica | exon |
| TCONS_00025506-exon-sc0000538-1510915933:63146..63343 | TCONS_00025506-exon-sc0000538-1510915933:63146..63343 | Clytia hemisphaerica | exon |
| TCONS_00025506-exon-sc0000538-1510915933:60461..62299 | TCONS_00025506-exon-sc0000538-1510915933:60461..62299 | Clytia hemisphaerica | exon |
| TCONS_00025506-exon-sc0000538-1491911889:63146..63343 | TCONS_00025506-exon-sc0000538-1491911889:63146..63343 | Clytia hemisphaerica | exon |
| TCONS_00025506-exon-sc0000538-1491911889:60461..62299 | TCONS_00025506-exon-sc0000538-1491911889:60461..62299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000538 | supercontig | sc0000538:60461..63343 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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