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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025483 ID=TCONS_00025483|Name=TCONS_00025483|organism=Clytia hemisphaerica|type=transcript|length=485bp
AGAGCGAAGAGGATTTTTGGTTGGGATTGACAACTCTCAACCTCATGACG
CGATCAAAAGAAAATGAGTTGACGATTGGTGTTCAATGGAAAAATGGTAA
TTGGTTGGGTAAAGAATTGGGTGAATTTAACGTGGATAGTGAAGACCAGG
ACTTTGCGATGACAGCAAAAAATGAACGTTTGCCAAACTTTGACGAGTTC
GACAGTGACATTACAGTCAACATGGCTTCGCGAAGTAAATTTGTCACTTT
TGATAAGGACGCATCACAAGGTAAGTGCATGTCGAAAAATATGTTTGACG
GCCAAGGGACGGCAGGGTGGATGAAAAAAAATGGCTGGTGTAGTAATTCA
GATTGGATGTTGTATACCAACGCCAAACAACCGATGCGGCGCACTTCAAG
CGGTCAGAATCAAATATATATCGGCTCCTTTATGATGTTTCGAGAAATAG
ACTAAACAGCCCAGCTGacaaacaacgttgtttca Run BLAST on NCBI protein sequence of TCONS_00025483-protein >TCONS_00025483-protein ID=TCONS_00025483-protein|Name=TCONS_00025483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
SEEDFWLGLTTLNLMTRSKENELTIGVQWKNGNWLGKELGEFNVDSEDQD
FAMTAKNERLPNFDEFDSDITVNMASRSKFVTFDKDASQGKCMSKNMFDG
QGTAGWMKKNGWCSNSDWMLYTNAKQPMRRTSSGQNQIYIGSFMMFREID Run BLAST on NCBI transcript from alignment at sc0000536:52117..55251- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025483 ID=TCONS_00025483|Name=TCONS_00025483|organism=Clytia hemisphaerica|type=transcript|length=3135bp|location=Sequence derived from alignment at sc0000536:52117..55251- (Clytia hemisphaerica)
AGAGCGAAGAGGATTTTTGGTTGGGATTGACAACTCTCAACCTCATGACG
CGATCAAAAGAAAATGAGTTGACGATTGGTGTTCAATGGAAAAATGGTAA
TTGGTTGGGTAAGAATCAGGACTTGAACAAAAATTTGTTTTTACTTAAGG
AGCTTTAAACTATATTTTGTGACGCTGTTTGATGTTCATTTTATAACACT
GCAATGGCTTCCCGTTCACCAATTTAAAGAAAAAATCTGATTAAAGATGG
CAGATATAGATTTTTCTTTAAGGTTTATAAAGGTCAGCCTGAAAACCTAG
GCTTCACATATTGGAAAATAATGCAATGTCGAATAGACGTTAGTGCATAA
AACAAAATCCATGAAAAAAGAAAAAGACGAATAGAAAAAGCTGTGCCGTC
TGGTATGTCCTAGTATGAGACTCTGTACCAGAGTGTATCTCACGTTTATC
GCTTCGTAGTACACTCTGTGCGCAATGTCTGTTTGATAAAAAAAACTCCC
GTACGGAGACCTCTGCGATGAAGTATGATTTATAGATAGCAACATTTCAC
TCCTAATTGTCCCGTAGATACTGGTTGTGTGTACAAACAAGCCTGAAATA
AGCTCGATTGAAAATCGACTGAAGAGTGAATAGAAATTTTTGATTTTGAA
ACTCAGGTAAAGAATTGGGTGAATTTAACGTGGATAGTGAAGACCAGGAC
TTTGCGATGACAGCAAAAAATGAACGTTTGCCAAACTTTGACGAGTTCGA
CAGTGACATTACAGTCAACATGGCTTCGCGAAGTAAATTTGTCACTTTTG
ATAAGGACGCATCACAAGGTATTATTTTATTGGCGAAAAATTTCATCGGG
GAAAAATATTCGTTAATACTGTAGCACAACGCTATGCAAACGTCATAATT
ATTACTTTTAACATTTGACCGAAATTCAATCCCACAATCCTTTTCATCTT
GATTTGTAATGCGTGCAAGTTATTACTATTGTATTGTCAATAACTGTAAT
TGACTTGCAAAAGCAATTAATGCAAAGGATGATGGGATTAAAACTCGGAC
AAACAATAATTTTGATGTCTATTTTTAGAATCACTGCGGTATGCTATTGG
TTAAAATTTCCGTAACTTTTCCCCGAGGATATTTTTCCCGAAAAGATATT
GGAATTTAGTTCTCAACCCCTGAATCAAAAACAGCATAAAACGGACTGGG
TTTGAGTTTAACGGAGTTTTCCCTCACGGACGATTGCCGGGCCGTACGGA
AATTTCAGGCAGTCAAATTGGCCGTGGTCAATCTCTACCGGCCGAAGAAC
AGGCCTGCAAAATATCTAAAGCTAGGCACCAAAATTAGTGACACAGCACC
CGATTAGATTTTGCTTCAAGTTCGTTATGCAGTGCACTGGGTTCACGCAC
TGTGATAGACGTCTGTTTTTTTTTAGGTTTTCTTTCTTGTGCGGCCCACT
TTTCGGTTTCTTCCGTTCGCTTGCCAGTGTCTCTTCAGTGCATCTTTTTT
GGGTTCCATTTTCATTTTTGATGTAGTGCAATTTATAACAAGCGTGCTTA
TAGAAAGCCATTACATTAGCACCCCTGTATCCCTCATTTACCCAAAAGGA
TAAAATGAAGAAATTGATGAAAGCTTAGTTTGGCAGAGGGGGATTTTGGA
GCCACTAAAATGGGTGAACTATAGTATTAAATGTACGAAAAGAGACTGTT
TTACAGATTGTAATTGTTTTGTTTTGTCAAATTTAACTGGAAATTAATCA
ACCTCGTCTCCCGTGTATCCCAGGCTTTATTCACCTTACTAATTGACGCT
GGAGAATACCCTGGTGTAGGATGAACTACAAAACATGTACAAAACAACCA
CTGGGCGAAATAAGAGATTTCCAATCCTGGAAATATCTTGAAAATATGAT
ATTTCCATATACTTTTGTAAATATGGAAATATGACTTTTCTATATTTCCA
AAGTTGTGGAAATATCATATTTCATGATATTTCCAATTTTTGGAATTATC
GGCGATCCAAAAAATATCTGCAATCTGATTGGTTAAAAAAAGTACAATAT
ATCTTGTATTTTGCATGTAAAATATAAATTGAAAATTGGAAATATGATAT
GTAATAGTTATCGGACAGTTGCTCGTACAATATGGAAATATGATATTACA
TATCATATTTCCAATTTTTGGAAATATCATATTTTCAAGATATTTCCAAG
ATTATTATTATTATTATTAATTTATTTGGTAAAGAAGGTCAATACAAACT
AGCAGACAGTGAGAAACCACTGATGTGGACCTACTATAAATCTAAGATAA
AATATACTATTATTATTGTTTAAATAAGTTAAAATATAAAATGATTTAGA
ACATTAGAGGCCGAGACCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACG
TACATTGAGAAACATTGAGGTCCAAGTATCGATCCCTGAGGAACGCCGTA
TTCAACAGAGGATTTGGTCGATGTAACTCCATTCACTTTGGTGATTTGGG
ATCTTTCTTTGAGGTAGCTCATCATGAATTCGAGGAAATTCCCCGACACC
CCACATGCAGATATTGGAAATCTCTTATTTCGCCCAGTGAACATGTCATA
AAAATTCTGACGTTACAAAGTTTAACAGCAATAAAATGGTTTCAAATCCA
AGAACTAATGTAATCCGACCTTTAGCTTTTGAATTACGTAACTTTTTTGC
ATTCGAAAAACAGATAACCCCAGGATATTATCTGGCGCTACCAATATAAG
CATCAAGAAGCTGATAATACGCAGGGAACGAGGTCGGGCTTATTTTGCCG
GATGGCCAATTTTTCAGATTTTATAAAAAGGATTATCTGAATTTAGTTTA
AAATATGATTTATTTTACAGGTAAGTGCATGTCGAAAAATATGTTTGACG
GCCAAGGGACGGCAGGGTGGATGAAAAAAAATGGCTGGTGTAGTAATTCA
GATTGGATGTTGTATACCAACGCCAAACAACCGATGCGGCGCACTTCAAG
CGGTCAGAATCAAATATATATCGGCTCCTTTATGATGTTTCGAGAAATAG
ACTAAACAGCCCAGCTGACAAACAACGTTGTTTCA Coding sequence (CDS) from alignment at sc0000536:52117..55251- >TCONS_00025483 ID=TCONS_00025483|Name=TCONS_00025483|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000536:52117..55251- (Clytia hemisphaerica)
GTAAGTGCATGTCGAAAAATATGTTTGACGGCCAAGGGACGGCAGGGTGG
ATGAAAAAAAATGGCTGGTGTAGTAATTCAGATTGGATGTTGTATACCAA
CGCCAAACAACCGATGCGGCGCACTTCAAGCGGTCAGAATCAAATATATA
TCGGCTCCTTTATGATGTTTCGAGAAATAGACTAAGTAAAGAATTGGGTG
AATTTAACGTGGATAGTGAAGACCAGGACTTTGCGATGACAGCAAAAAAT
GAACGTTTGCCAAACTTTGACGAGTTCGACAGTGACATTACAGTCAACAT
GGCTTCGCGAAGTAAATTTGTCACTTTTGATAAGGACGCATCACAAGAGC
GAAGAGGATTTTTGGTTGGGATTGACAACTCTCAACCTCATGACGCGATC
AAAAGAAAATGAGTTGACGATTGGTGTTCAATGGAAAAATGGTAATTGGT
TGGGTAAGTGCATGTCGAAAAATATGTTTGACGGCCAAGGGACGGCAGGG
TGGATGAAAAAAAATGGCTGGTGTAGTAATTCAGATTGGATGTTGTATAC
CAACGCCAAACAACCGATGCGGCGCACTTCAAGCGGTCAGAATCAAATAT
ATATCGGCTCCTTTATGATGTTTCGAGAAATAGACTAAGTAAAGAATTGG
GTGAATTTAACGTGGATAGTGAAGACCAGGACTTTGCGATGACAGCAAAA
AATGAACGTTTGCCAAACTTTGACGAGTTCGACAGTGACATTACAGTCAA
CATGGCTTCGCGAAGTAAATTTGTCACTTTTGATAAGGACGCATCACAAG
AGCGAAGAGGATTTTTGGTTGGGATTGACAACTCTCAACCTCATGACGCG
ATCAAAAGAAAATGAGTTGACGATTGGTGTTCAATGGAAAAATGGTAATT
GGTTGGGTAAGTGCATGTCGAAAAATATGTTTGACGGCCAAGGGACGGCA
GGGTGGATGAAAAAAAATGGCTGGTGTAGTAATTCAGATTGGATGTTGTA
TACCAACGCCAAACAACCGATGCGGCGCACTTCAAGCGGTCAGAATCAAA
TATATATCGGCTCCTTTATGATGTTTCGAGAAATAGACTAAGTAAAGAAT
TGGGTGAATTTAACGTGGATAGTGAAGACCAGGACTTTGCGATGACAGCA
AAAAATGAACGTTTGCCAAACTTTGACGAGTTCGACAGTGACATTACAGT
CAACATGGCTTCGCGAAGTAAATTTGTCACTTTTGATAAGGACGCATCAC
AAGAGCGAAGAGGATTTTTGGTTGGGATTGACAACTCTCAACCTCATGAC
GCGATCAAAAGAAAATGAGTTGACGATTGGTGTTCAATGGAAAAATGGTA
ATTGGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025483-exon-sc0000536-1575043694:55144..55251 | TCONS_00025483-exon-sc0000536-1575043694:55144..55251 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1575043694:54434..54595 | TCONS_00025483-exon-sc0000536-1575043694:54434..54595 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1575043694:52117..52331 | TCONS_00025483-exon-sc0000536-1575043694:52117..52331 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1510915933:55144..55251 | TCONS_00025483-exon-sc0000536-1510915933:55144..55251 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1510915933:54434..54595 | TCONS_00025483-exon-sc0000536-1510915933:54434..54595 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1510915933:52117..52331 | TCONS_00025483-exon-sc0000536-1510915933:52117..52331 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1491911889:55144..55251 | TCONS_00025483-exon-sc0000536-1491911889:55144..55251 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1491911889:54434..54595 | TCONS_00025483-exon-sc0000536-1491911889:54434..54595 | Clytia hemisphaerica | exon |
| TCONS_00025483-exon-sc0000536-1491911889:52117..52331 | TCONS_00025483-exon-sc0000536-1491911889:52117..52331 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000536 | supercontig | sc0000536:52117..55251 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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