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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025482 ID=TCONS_00025482|Name=TCONS_00025482|organism=Clytia hemisphaerica|type=transcript|length=671bp
AGAGCGAAGAGGATTTTTGGTTGGGATTGACAACTCTCAACCTCATGACG
CGATCAAAAGAAAATGAGTTGACGATTGGTGTTCAATGGAAAAATGGTAA
TTGGTTGGGTAAAGAATTGGGTGAATTTAACGTGGATAGTGAAGACCAGG
ACTTTGCGATGACAGCAAAAAATGAACGTTTGCCAAACTTTGACGAGTTC
GACAGTGACATTACAGTCAACATGGCTTCGCGAAGTAAATTTGTCACTTT
TGATAAGGACGCATCACAAGGTAAGTGCATGTCGAAAAATATGTTTGACG
GCCAAGGGACGGCAGGGTGGATGAAAAAAAATGGCTGGTGTAGTAATTCA
AATTGGATGTTGTATACCAACGCCAAACAACCGATGCGGCGCACTTCAAG
CGGTCAGAATCAAATATATATCGGCTCCTTTATGATGTTTCGAGAAATAG
ACTAAACAGCCCAGCTGACACAcgctgtttcaacgtttatctgacgttca
caacatccatataacgttagatggacattgaaacaacgttgtgtgccagc
tgggagccAGCATTGACCTTACTTGGCTACTTTTTCACCTACctgaaagg
aagaaattttggcgggaatttaatttggcggatggccgaaaaagtttttt
agagggaatttaatttggcgg Run BLAST on NCBI transcript from alignment at sc0000536:51173..55251- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025482 ID=TCONS_00025482|Name=TCONS_00025482|organism=Clytia hemisphaerica|type=transcript|length=4079bp|location=Sequence derived from alignment at sc0000536:51173..55251- (Clytia hemisphaerica)
AGAGCGAAGAGGATTTTTGGTTGGGATTGACAACTCTCAACCTCATGACG
CGATCAAAAGAAAATGAGTTGACGATTGGTGTTCAATGGAAAAATGGTAA
TTGGTTGGGTAAGAATCAGGACTTGAACAAAAATTTGTTTTTACTTAAGG
AGCTTTAAACTATATTTTGTGACGCTGTTTGATGTTCATTTTATAACACT
GCAATGGCTTCCCGTTCACCAATTTAAAGAAAAAATCTGATTAAAGATGG
CAGATATAGATTTTTCTTTAAGGTTTATAAAGGTCAGCCTGAAAACCTAG
GCTTCACATATTGGAAAATAATGCAATGTCGAATAGACGTTAGTGCATAA
AACAAAATCCATGAAAAAAGAAAAAGACGAATAGAAAAAGCTGTGCCGTC
TGGTATGTCCTAGTATGAGACTCTGTACCAGAGTGTATCTCACGTTTATC
GCTTCGTAGTACACTCTGTGCGCAATGTCTGTTTGATAAAAAAAACTCCC
GTACGGAGACCTCTGCGATGAAGTATGATTTATAGATAGCAACATTTCAC
TCCTAATTGTCCCGTAGATACTGGTTGTGTGTACAAACAAGCCTGAAATA
AGCTCGATTGAAAATCGACTGAAGAGTGAATAGAAATTTTTGATTTTGAA
ACTCAGGTAAAGAATTGGGTGAATTTAACGTGGATAGTGAAGACCAGGAC
TTTGCGATGACAGCAAAAAATGAACGTTTGCCAAACTTTGACGAGTTCGA
CAGTGACATTACAGTCAACATGGCTTCGCGAAGTAAATTTGTCACTTTTG
ATAAGGACGCATCACAAGGTATTATTTTATTGGCGAAAAATTTCATCGGG
GAAAAATATTCGTTAATACTGTAGCACAACGCTATGCAAACGTCATAATT
ATTACTTTTAACATTTGACCGAAATTCAATCCCACAATCCTTTTCATCTT
GATTTGTAATGCGTGCAAGTTATTACTATTGTATTGTCAATAACTGTAAT
TGACTTGCAAAAGCAATTAATGCAAAGGATGATGGGATTAAAACTCGGAC
AAACAATAATTTTGATGTCTATTTTTAGAATCACTGCGGTATGCTATTGG
TTAAAATTTCCGTAACTTTTCCCCGAGGATATTTTTCCCGAAAAGATATT
GGAATTTAGTTCTCAACCCCTGAATCAAAAACAGCATAAAACGGACTGGG
TTTGAGTTTAACGGAGTTTTCCCTCACGGACGATTGCCGGGCCGTACGGA
AATTTCAGGCAGTCAAATTGGCCGTGGTCAATCTCTACCGGCCGAAGAAC
AGGCCTGCAAAATATCTAAAGCTAGGCACCAAAATTAGTGACACAGCACC
CGATTAGATTTTGCTTCAAGTTCGTTATGCAGTGCACTGGGTTCACGCAC
TGTGATAGACGTCTGTTTTTTTTTAGGTTTTCTTTCTTGTGCGGCCCACT
TTTCGGTTTCTTCCGTTCGCTTGCCAGTGTCTCTTCAGTGCATCTTTTTT
GGGTTCCATTTTCATTTTTGATGTAGTGCAATTTATAACAAGCGTGCTTA
TAGAAAGCCATTACATTAGCACCCCTGTATCCCTCATTTACCCAAAAGGA
TAAAATGAAGAAATTGATGAAAGCTTAGTTTGGCAGAGGGGGATTTTGGA
GCCACTAAAATGGGTGAACTATAGTATTAAATGTACGAAAAGAGACTGTT
TTACAGATTGTAATTGTTTTGTTTTGTCAAATTTAACTGGAAATTAATCA
ACCTCGTCTCCCGTGTATCCCAGGCTTTATTCACCTTACTAATTGACGCT
GGAGAATACCCTGGTGTAGGATGAACTACAAAACATGTACAAAACAACCA
CTGGGCGAAATAAGAGATTTCCAATCCTGGAAATATCTTGAAAATATGAT
ATTTCCATATACTTTTGTAAATATGGAAATATGACTTTTCTATATTTCCA
AAGTTGTGGAAATATCATATTTCATGATATTTCCAATTTTTGGAATTATC
GGCGATCCAAAAAATATCTGCAATCTGATTGGTTAAAAAAAGTACAATAT
ATCTTGTATTTTGCATGTAAAATATAAATTGAAAATTGGAAATATGATAT
GTAATAGTTATCGGACAGTTGCTCGTACAATATGGAAATATGATATTACA
TATCATATTTCCAATTTTTGGAAATATCATATTTTCAAGATATTTCCAAG
ATTATTATTATTATTATTAATTTATTTGGTAAAGAAGGTCAATACAAACT
AGCAGACAGTGAGAAACCACTGATGTGGACCTACTATAAATCTAAGATAA
AATATACTATTATTATTGTTTAAATAAGTTAAAATATAAAATGATTTAGA
ACATTAGAGGCCGAGACCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACG
TACATTGAGAAACATTGAGGTCCAAGTATCGATCCCTGAGGAACGCCGTA
TTCAACAGAGGATTTGGTCGATGTAACTCCATTCACTTTGGTGATTTGGG
ATCTTTCTTTGAGGTAGCTCATCATGAATTCGAGGAAATTCCCCGACACC
CCACATGCAGATATTGGAAATCTCTTATTTCGCCCAGTGAACATGTCATA
AAAATTCTGACGTTACAAAGTTTAACAGCAATAAAATGGTTTCAAATCCA
AGAACTAATGTAATCCGACCTTTAGCTTTTGAATTACGTAACTTTTTTGC
ATTCGAAAAACAGATAACCCCAGGATATTATCTGGCGCTACCAATATAAG
CATCAAGAAGCTGATAATACGCAGGGAACGAGGTCGGGCTTATTTTGCCG
GATGGCCAATTTTTCAGATTTTATAAAAAGGATTATCTGAATTTAGTTTA
AAATATGATTTATTTTACAGGTAAGTGCATGTCGAAAAATATGTTTGACG
GCCAAGGGACGGCAGGGTGGATGAAAAAAAATGGCTGGTGTAGTAATTCA
GATTGGATGTTGTATACCAACGCCAAACAACCGATGCGGCGCACTTCAAG
CGGTCAGAATCAAATATATATCGGCTCCTTTATGATGTTTCGAGAAATAG
ACTAAACAGCCCAGCTGACAAACAACGTTGTTTCAACNGCCGAGACCAAA
ATCTTAGTGTCCTCAAAATTTTGAAAAATTTAATTTATTGAGATTTAAGT
ATTAACTTAGATTTTGTTAGGATGCATGAATAGGTTGATAGATACTAGAG
AAATTTGTGAGAATTTTAAATGTAGGTTTGACTGCAGGATCCATTCTGTG
TAGTTTAAAATAAAAATTAAAAAAATTCTATGTATATATAATGTATAAGA
TATATAAACTGAGATAAAATATTAATAGTATAGATAATTTTCCGGGTCAC
GAGCCCTGGATGTCGAATTGTAGCCAAAGTTAATTTTGGGTATAACTTTT
GATTCAAGTAATGCCTTTTTGAAAGTGGCTAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTTA
TTTTGCCGGATGGCCAATTTTTCAGATTTTATAAAAAGGATTATCTGAAT
TTAGTTTAAAATATGATTTATTTTACAGGTAAGTGCATGTCGAAAAATAT
GTTTGACGGCCAAGGGACGGCAGGGTGGATGAAAAAAAATGGCTGGTGTA
GTAATTCAAATTGGATGTTGTATACCAACGCCAAACAACCGATGCGGCGC
ACTTCAAGCGGTCAGAATCAAATATATATCGGCTCCTTTATGATGTTTCG
AGAAATAGACTAAACAGCCCAGCTGACACACGCTGTTTCAACGTTTATCT
GACGTTCACAACATCCATATAACGTTAGATGGACATTGAAACAACGTTGT
GTGCCAGCTGGGAGCCAGCATTGACCTTACTTGGCTACTTTTTCACCTAC
CTGAAAGGAAGAAATTTTGGCGGGAATTTAATTTGGCGGATGGCCGAAAA
AGTTTTTTAGAGGGAATTTAATTTGGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025482-exon-sc0000536-1575043694:55144..55251 | TCONS_00025482-exon-sc0000536-1575043694:55144..55251 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1575043694:54434..54595 | TCONS_00025482-exon-sc0000536-1575043694:54434..54595 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1575043694:51173..51573 | TCONS_00025482-exon-sc0000536-1575043694:51173..51573 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1510915933:55144..55251 | TCONS_00025482-exon-sc0000536-1510915933:55144..55251 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1510915933:54434..54595 | TCONS_00025482-exon-sc0000536-1510915933:54434..54595 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1510915933:51173..51573 | TCONS_00025482-exon-sc0000536-1510915933:51173..51573 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1491911889:55144..55251 | TCONS_00025482-exon-sc0000536-1491911889:55144..55251 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1491911889:54434..54595 | TCONS_00025482-exon-sc0000536-1491911889:54434..54595 | Clytia hemisphaerica | exon |
| TCONS_00025482-exon-sc0000536-1491911889:51173..51573 | TCONS_00025482-exon-sc0000536-1491911889:51173..51573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000536 | supercontig | sc0000536:51173..55251 - |
Blast
The following BLAST results are available for this feature:
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