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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025475 ID=TCONS_00025475|Name=TCONS_00025475|organism=Clytia hemisphaerica|type=transcript|length=1532bpRun BLAST on NCBI transcript from alignment at sc0000536:221373..222904+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025475 ID=TCONS_00025475|Name=TCONS_00025475|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at sc0000536:221373..222904+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025475 vs. Swiss-Prot (Human)
Match: Z286A (Zinc finger protein 286A OS=Homo sapiens GN=ZNF286A PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.244e-31 Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 2
Query: 512 NSLIKEHQRTLHDKPFKCQECGKCFVTKSCLVRHQKTVHQGIKAFECQQCCKSFGNKTKLTLHQRTVHEGIKLFKCQECYKSFGH*STLTTHQRTVHEGIKAF*CQTCAKSFGQKTTLTFQQRTVHEGIKPYKCQE 919
++L+K+ + KP KC +CG+ F S L+RHQ+ VH G K + C +C KSF ++ LT HQRT H I LF+C EC K+F S+L THQR +H G + + C C K F + T L Q + +H G+KPY+C E
Sbjct: 228 SNLMKKQRTYKEKKPHKCNDCGELFTYHSVLIRHQR-VHTGEKPYTCNECGKSFSHRANLTKHQRT-HTRI-LFECSECKKTFTESSSLATHQR-IHVGERPYECNECGKGFNRSTHLV-QHQLIHTGVKPYECNE 358 HSP 2 Score: 42.743 bits (99), Expect = 2.244e-31 Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 925 QVFGHKTTLTSHQRTVHQGMKTFKCQECGKSLATKIYLKKPLNEQSMLKPFEC 1083
+ F H ++LT HQR VH G K ++C ECGK+ + +L + + KP+EC
Sbjct: 389 KAFSHCSSLTKHQR-VHTGEKPYECSECGKTFSQSTHLVQHQRIHTGEKPYEC 440 HSP 3 Score: 27.335 bits (59), Expect = 2.244e-31 Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 2
Query: 1091 GSFFDEKGSLRKHQRKVHDKIKPFQCHGCGQ-FLH 1192
G F + KHQR +H KP++C CG+ F+H
Sbjct: 444 GKTFSRSSNFAKHQR-IHIGKKPYKCSECGKAFIH 477 HSP 4 Score: 113.235 bits (282), Expect = 9.693e-27 Identity = 83/225 (36.89%), Postives = 115/225 (51.11%), Query Frame = 2
Query: 512 NSLIKEHQRT-LHDKPFKCQECGKCFVTKSCLVRHQKTVHQGIKAFECQQCCKSFGNKTKLTLHQRTVHEGIKLFKCQECYKSFGH*STLTTHQRTVHEGIKAF*CQTCAKSFGQKTTLTFQQRTVHEGIKPYKCQERCKFLDIKRP*LRIKELSIKV*RPXXXXXXXXXXXQKFI*RNP*MNSPCLSLLSVNYGSFFDEKGSLRKHQRKVHDKIKPFQCHGCGQ 1183
+S + HQR + ++P++C ECGK F + LV+HQ +H G+K +EC +C K+F + + L HQRT H G K +KCQEC K+F H S+LT HQR VH G K + C C K+F Q T L QR +H G KPY+C E K + + + I + P S C G F +L +HQR H KPF+C+ CG+
Sbjct: 310 SSSLATHQRIHVGERPYECNECGKGFNRSTHLVQHQ-LIHTGVKPYECNECDKAFIHSSALIKHQRT-HTGEKPYKCQECGKAFSHCSSLTKHQR-VHTGEKPYECSECGKTFSQSTHLVQHQR-IHTGEKPYECNECGKTFSRSSNFAKHQRIHIG--------------------KKPYKCSEC--------GKAFIHSSALIQHQR-THTGEKPFRCNECGK 501 HSP 5 Score: 102.449 bits (254), Expect = 5.305e-26 Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 2
Query: 521 IKEHQRTLHDKPFKCQECGKCFVTKSCLVRHQKTVHQGIKAFECQQCCKSFGNKTKLTLHQRTVHEGIKLFKCQECYKSFGH*STLTTHQRTVHEGIKAF*CQTCAKSFGQKTTLTFQQRTVHEGIKPYKCQE 919
+ +HQRT F+C EC K F S L HQ+ +H G + +EC +C K F T L HQ +H G+K ++C EC K+F H S L HQRT H G K + CQ C K+F ++LT QR VH G KPY+C E
Sbjct: 286 LTKHQRTHTRILFECSECKKTFTESSSLATHQR-IHVGERPYECNECGKGFNRSTHLVQHQ-LIHTGVKPYECNECDKAFIHSSALIKHQRT-HTGEKPYKCQECGKAFSHCSSLTKHQR-VHTGEKPYECSE 414 HSP 6 Score: 34.2686 bits (77), Expect = 5.305e-26 Identity = 18/53 (33.96%), Postives = 26/53 (49.06%), Query Frame = 1
Query: 925 QVFGHKTTLTSHQRTVHQGMKTFKCQECGKSLATKIYLKKPLNEQSMLKPFEC 1083
+ F T L HQR +H G K ++C ECGK+ + K KP++C
Sbjct: 417 KTFSQSTHLVQHQR-IHTGEKPYECNECGKTFSRSSNFAKHQRIHIGKKPYKC 468 HSP 7 Score: 106.301 bits (264), Expect = 2.523e-24 Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 2
Query: 506 IMNSLIKEHQRT-LHDKPFKCQECGKCFVTKSCLVRHQKTVHQGIKAFECQQCCKSFGNKTKLTLHQRTVHEGIKLFKCQECYKSFGH*STLTTHQRTVHEGIKAF*CQTCAKSFGQKTTLTFQQRTVHEGIKPYKCQE 919
I +S + +HQRT +KP+KCQECGK F S L +HQ+ VH G K +EC +C K+F T L HQR +H G K ++C EC K+F S HQR +H G K + C C K+F + L QRT H G KP++C E
Sbjct: 364 IHSSALIKHQRTHTGEKPYKCQECGKAFSHCSSLTKHQR-VHTGEKPYECSECGKTFSQSTHLVQHQR-IHTGEKPYECNECGKTFSRSSNFAKHQR-IHIGKKPYKCSECGKAFIHSSALIQHQRT-HTGEKPFRCNE 498 HSP 8 Score: 93.5893 bits (231), Expect = 3.612e-20 Identity = 58/131 (44.27%), Postives = 77/131 (58.78%), Query Frame = 2
Query: 515 SLIKEHQRT-LHDKPFKCQECGKCFVTKSCLVRHQKTVHQGIKAFECQQCCKSFGNKTKLTLHQRTVHEGIKLFKCQECYKSFGH*STLTTHQRTVHEGIKAF*CQTCAKSFGQKTTLTFQQRTVHEGIKP 904
S + +HQR +KP++C ECGK F + LV+HQ+ +H G K +EC +C K+F + HQR +H G K +KC EC K+F H S L HQRT H G K F C C KSF ++L QR VH +P
Sbjct: 395 SSLTKHQRVHTGEKPYECSECGKTFSQSTHLVQHQR-IHTGEKPYECNECGKTFSRSSNFAKHQR-IHIGKKPYKCSECGKAFIHSSALIQHQRT-HTGEKPFRCNECGKSFKCSSSLIRHQR-VHTEEQP 521 The following BLAST results are available for this feature:
BLAST of TCONS_00025475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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