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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025429 ID=TCONS_00025429|Name=TCONS_00025429|organism=Clytia hemisphaerica|type=transcript|length=5634bpRun BLAST on NCBI transcript from alignment at sc0000535:129703..147339- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025429 ID=TCONS_00025429|Name=TCONS_00025429|organism=Clytia hemisphaerica|type=transcript|length=17637bp|location=Sequence derived from alignment at sc0000535:129703..147339- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025429 vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 6.878e-93 Identity = 187/457 (40.92%), Postives = 264/457 (57.77%), Query Frame = 1
Query: 508 MGGGKTKDRVIINVGGLRHECYISTIQNFPDTRLYWIAE-TALKMADFDPEGNEFFFDRHPQCFTNILNYCRTGKLHCPNDVCGPLFEQELAFWGVDELMMEPCCWGTYTQHRDAHKNLSMFDDIHAQGXXXXXXXXXXXXXXXLMTSAPGRHKSKPYQQTVDHKS-------LWSQWLAFRPRLWAILEKPFSSVYAQVSAFISLVIILMSLTTFCAET---------------------VKYFEEEK--HIFGQLEYFYCAFFTLELLLRLWCCPSKKKYFKSAMTWIDIISTAQFYI-------SFIADTHAFDXXXXXXXXXXXXXXXXXKNLSGMQVIAQTLKASANELLLLCIIVFIPMVIFSTCVFYAEQ---------GQNNTKFPSIPETFWWAIITMTTVGYGDVTPDTLAGRIIGGLTACSGVLIVALPVSVIGSNFSLYYSYAQA 1737
MG G +R++INVGG RH+ Y ST++ P TRL W+AE A D+DP +EFFFDRHP F +ILNY RTGKLHCP DVCGPL+E+ELAFWG+DE +EPCCW TY QHRDA + L F G A D + D + S G + + ++ S W +W +PR+WA+ E P+SS YA+ AF SL IL+S+TTFC ET V+Y+ E + +E +FT E L+R+ CP+K ++ K+++ ID ++ FY+ S A L V R +R+ R+F+ ++ G++V+ TL+AS NE LLL I + + ++IF+T ++YAE+ +T F +IP FWWA++TMTT+GYGD+ P T +G ++G L A +GVL +A+PV VI +NF +YYS A A
Sbjct: 1 MGQGDESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSF------GGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRW---QPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448 The following BLAST results are available for this feature:
BLAST of TCONS_00025429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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