TCONS_00025426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025426
Unique NameTCONS_00025426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length897

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025426 ID=TCONS_00025426|Name=TCONS_00025426|organism=Clytia hemisphaerica|type=transcript|length=897bp
AGGCATTGTATTTTAATAAGATTTGACCATATTTGGAAAGTGGTCCGTCT
TTCTAAAAGGATGGTCGGCGCATTTGTTTAACCTGTTCCTCGTATTCGTG
GTTTTCTATCACACGCCTAGTTCAGGATCAACACAGCAGTCAATCCACTG
GAAGGGAAGGTACACTAACCTACACCCACATCTTAAACTTCATACCTCTA
ACAAGTTAAAATACCAAAAACAACATGAGCTGGGACGGATACATTGACAA
CTTACTCGGACATTGCGTAGGACAGTGTGACGCAGCTTGTATTATTGGAA
AGGATGGTTCTAAATGGACAACTGATGGTCATGCTAGCGCTTTAAAAATC
ACTGCACAGGAAGCAGCTACCGTTGGGCGAGCCTTTACATCAGGTGATAT
GACACCTTTCCAAGCCAGTGGTATTGTGATTGCAGGTGttaaatatcaat
ttttgagaGGGGATGATATCTTGGCTTTAGGCAAAAAGAAAGATAATGGA
GCTGTTACATTGCAATGTTCAAAGACGGCCGTAGTTATTGGACACACGAA
AGAAGGAGGTACACAGGGAAACACTAATAAAGGAGTTGCAGTCATTGCTG
AATATTTAGAGAGTCTTGGCATGTAGAATACacgttaaatatttttttgt
tgggcTCCTAATTCAGTAGCATATGCTTTTACATTCAATTGTTTGGTCTG
TTGACTGGAATGACATTTCCAAATGACTAAAATCTGTAATTAGCTATTTA
TACTGGTGGAATTCTGATGCTGCTTCTTTTCATACACAATATCTTGCTTG
ATCTTTGTATAATTAATTTTTACATTGTCTTTTCACATTTTTGTGACATA
GAATATTATTATAGAATTTTAAATACTTGGAATAAATCTATTAtttg
Run BLAST on NCBI

transcript from alignment at sc0000535:116743..122322-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025426 ID=TCONS_00025426|Name=TCONS_00025426|organism=Clytia hemisphaerica|type=transcript|length=5580bp|location=Sequence derived from alignment at sc0000535:116743..122322- (Clytia hemisphaerica)
AGGCATTGTATTTTAATAAGATTTGACCATATTTGGAAAGTGGTCCGTCT
TTCTAAAAGGATGGTCGGCGCATTTGTTTAACCTGTTCCTCGTATTCGTG
GTTTTCTATCACACGCCTAGTTCAGGATCAACACAGCAGTCAATCCACTG
GAAGGGAAGGTACACTAACCTACACCCACATCTTAAACTTCATACCTCTA
ACAAGTTAAAATACCGTAAGTTGTTTGCGTTCAGGACATGTTTTAAATTT
ATTTTTTGAAATACTCTTCTTACATGGACAAATGTTAATTTATCATTTAA
TTTTATCGTTGTGGTTCAAAATGCAGTGTTTGGTACTATCAAAACCCATC
ACATCATAATACAATCTTCTAACGTTCTTTGGTCAATCCTAATGCTCTCA
CTAACCTACTCTAGACATTTAGAAAAATCAAATAATACGACTGAAATGAG
CTTACAATTATTTGGATGGGTGTGTTGAGATAGACAAATGCAGTGAGATG
AACATAGTCTTAACCCAGTTTTGATAATGCTGCCGACTTTCCTTCAGTTT
TTTCTTGGACCTTATCTGATTCTTTTCTCCAAGTTGGCTCACTTAGAATT
TATTTTTTGAAGATTTTATTTTCAAAACAAAGGGGCTCATTGAGAAATTG
TGAATTACTCTACAGTAATCGTAGAAATTTAGCGAGACTAATTTTAGCGT
TTTAGCGAGTTTTCCCTATTTTCGCTAAAATAAATCTTGCTAAAACACGC
CAATAAAATGCTAAAATTTATCCGTGTGAAATTTCTGGTTGTATTGCCTT
GATACATTTTTATCAATAGGAAGGGCTTTAGTGCAAAGAAATGCTAGAAA
ATGAATTCAGTCAATAATGCAATACAATTATTCGCTAAACTTTATCCACG
CAAAATTTTTTGACATCGTGATTCATTAGCTAAAATCCGAAACAAATCTA
GATTTTCTTGACTCGCCAATGAACGCCAAAATTAGTCTTGCTAAAATGTT
GATGATTAAAGATCATACAGCAAGAGACGCTCCTAAAATTAATTTATACT
TCTCTGATTTTTAAAGATATCAGATATTTTCAGATATTTAATGCAGATTC
CTTCAATTGTTCTGAGCAATTTAATTCTAAATCTTTGACTTTAGCAAGAA
AACAATAAAACTTTGTAGGGACTGTATAGCGGAGGTAACTTATCAAGGCC
TTTTTTTAAAATAGATTGTCACACTTGCTTTCCCTCGCTATTCAATGAGT
TGTGTAATAAGGTACTGTAGGAAGTATTTCCACAAAACTTAAACACAACT
TATTTTTTTGGCAAATTCTTTCATGAAGATCTTTCAGTCGAGGATTATGC
CCTAAATAAGAGAATACCCAAGTTAGAGGATTACCTTATTTAGGAGATTT
TCAGTCTCTTATTTAAGAGAACGTTACCTAAACTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAATTCTGTACGTTTCACAAATTTACTTCAG
AGCAGACTATTTGCGCAATATGAAAATAAGATCACGTGAAAGATCACGTT
TCCGTGATTCCAATGACCCAAATATCAAATTAAAATACCTTTTCATTCTT
TTTCAAACTTCGAAAAACCATAAATAGCCTCATTTGCATGTGTTGACGTA
ATTTTTAAAATAATGAAGAAACACCCTCAACCTTCAAAACGCGTTTTTTC
TCAAACCCCCCTTATTTAGGAGAGACAAGAGCGACTCACTTTCTGTTTGA
CCCGCGTTCTGACCGCGCTTAAACGCGATTCTTAAATATGGCCCGATCTA
TATTATTACTTTTCACAAAAGTCTCATGATGTAGATCCGCCTTTAGATTG
ATAGACCCTAACCATCCTAGGTCCACAAAACAAAAGCAGAACTCAACCAA
ATTTTGCTAGAAAGGAGAAAAAAATGTGCTGAGTCGATCTATGAAGTTCA
AAACTTGCGCAAAATGATGAGAAGGCCAAAAATTAACGAAGAAAGAAAAG
TCTCCTAGTTAAGAGAAAAATCTCCTACCTAAGAGACCTTCTCTTAAATA
GAGTATATCTCTTATATAGGGCATAATCCTCGACTGTCTTTCAAATACTT
TGGACACCACTTTTTTTCTGGCCTGCATCTTTTGTAAATAATATCAGAAA
CATGCAATTCAAGGACATTCAATCATAGTCCTTATAAGAACACTGGTCTG
GAAGCTTAGCGTTTTAACTTTTTGTCAGCCTTTTCCTTTGTTATTATCAA
AGGATGAAAATCAATTTGCTCAGTCAGTCGAGGATTATGCCCTAAATAAG
AGAATACCCAAGTTAGAGGATTACCTTATTTAGGAGATTTTCCGTCTCTG
TACGTTTCACAAATTTACTTCAGAGCAGACTATTTGCGCAATATGGAAAT
AAGATCACATGAAAGATCACGTTTCCGTGATTCCGACGACACAAAAACCA
AAATAAAATACCTTTACATTCTTTTTCAAACTTCGAAAAACCATAAATAG
CCTCCATTTGCATGTGTTGACGTAATTTTTAAAATAATGAAGAAACACCC
TCGACCTTCAAAACGCGTTTTTTCTCAAACCCCCTTATTTAGGAGAGACA
AGAGCGACTCACTTTCTGTTTGACCCGCGTTTTGACCGCGTTTAAACGCG
TTTATTAAATATGGCCCGATCTATATTCGATCGAAATTCTCATGATGTAG
ATCGGCCTTTAGATTGATAGACCCTTACCATCCTAGGTCCACGAAACAAA
AGCAGAACTCAGCCAAATTTTGCTAGAAGGGAGAAAAAAACATGCTGAGT
CGATCTATGAAGTTTAAAACTTGCGCAAAATGATGAGAAGGCCAAAAATT
AACGAAGAAAGAAAAGTCTCCTAGAAATCTCCTAGTTAAGAGACCTTCTC
TTAAATAGAGTATATCTCTTATTTAGGGCATAATCCTTGACTGTCTATTT
TTGATCACATTAATAAGTACTCCTCTTGAGATTGGATTAAGATTTAATCA
CATGATTAAAAAGTGAGCAAAAGAAACTAATTTTTCAATGCAAGTTCAAG
TAAGAAACATTGAAAGAAACAAAAGGCTTCCAGACAAGGTTTTTTATACG
CACTATGATCTAATTCACACTCGATGGCTCATTTTAACTGGCTTCAATAG
TTTAGACAAATATTCTTTGTGGATTGACTTTACTAAATTAAAGTACTAAT
CTCTTAATTGTAATAAGAGCTGCGACTTACAAACACTTTCAAATACCAAT
TACTTTTAATAAAACCTCCGGGCATTTTATTGATTTTACAAGAAAGAAGT
TTTATTAAATAATCTTTGCCAAAGGTTGCTTAATAAAGTGGATGAGAATC
TTGTTTTGTGCTTTGTTTTCTTTCAATTCGTTCAAACTTTCATTTTAATG
TAAAAATGGGTTAAAATTCAGTTTGTAAACTGGAAAAAAAAAGTTTCAAA
TAGTCTCCCCTCCTAGAGGAAAGGTAGATATTTAAAGGAGGGGTGTTATT
TGAAGTAACACGGTAATTCCGAATTAATTAAACCAAGATTATTAATAATG
CCTCACACTAATTTGTCTCAACCAGTAGAAGCAGAAATTTAACAATTGCA
CTTTTTGTCCATATCTAACCTGTGCACTTCACAAGGAAAGTCATTTGTCA
TGCCACCATATCATAAACAACCATCTGGAAACAGTGTCAAATCATTAATG
ATCCATGCTTAGCAAAGGTAAATTCAATTTCAAATTTCATATTGATGTTC
TGAAATCAACTGTGTTATCACTCATTGTTTAACCTGTATTCATGTTTATA
GGCTTCAACATTTTTCAAATGGACATCAAGCTAGAGATGGTCTATTAGAG
ATAAAAAGAATGCTAAGTTGAAAGGGTTGAATATTCATATTTTACAATGG
ACAGGGTTGTTCAGCTCTGCATCTCTTGTTATTTTACTTCTTTCAGGGCT
ACCAAAGATGAGTTGGGACGCATATGTAGCTAGTGTTGTTGGCTATTGTG
GTGGGGCAGCTGACAAAGCATGTATTATTGGGTTAGATGGTTCTAAGTGG
ACATCAGATGCTCCAGAAGGTGCCTTACCAATTAGTGCTGATGAGGCTGG
TGTCATTGCTAGGGCTATTAATAACGAAGACAACAGTTCTTTTCAAGCCA
GCGGTATTGTCATCGGTAGTGTAAAATATCAATTCCTGCGAGGGGATGAA
GGTGTTTATTTGGGAAAAAAGAAAGACAATGGTGCAGTCACATTACAAAA
AACCAATCAAGCTATAATCATTGGACACACAAAAGAGGGTGCCTCACAAG
GAAGTACAAACCAAGGTGTTGGGAAAATGGCAGACTATTTTATCAGTATT
GGTTACTGAATTTGTAAAACATTATTTTAAAATTCTATTTTATAAAAAGA
GTATCTTGTAAACATTTATTTTTTGAGCAGAAAGAATTTATAAATGAATA
TTGCTTTAAACATACTTGGTGTAATATACCATATAATTATACCATTGTTA
AAGTAAACAAAATTAATCTCTAAAGATTACAAGTTATATATATGTTACTT
TATTACAAAGTAAGTGAAATGTTAGACCTAATTTAGTTTTCAACTTTTAT
TCAGCCAAATAGCCAAAGTCATTGTTATTGTATAGCTAAGTGGTTACACA
CCATATTGGGTTTGGATAATCTGCTGTAATGTATAACCTTAACTGACATC
AATAATCCAAAATATGGGTGCAAATCTATAAACTGTCTTAACCTAAATGC
ATCACAATTGAATTAATCATGTAATTTTTTTTTAAATTTATTCTTCAGAA
AAACAACATGAGCTGGGACGGATACATTGACAACTTACTCGGACATTGCG
TAGGACAGTGTGACGCAGCTTGTATTATTGGAAAGGATGGTTCTAAATGG
ACAACTGATGGTCATGCTAGCGCTTTAAAAATCACTGCACAGGAAGCAGC
TACCGTTGGGCGAGCCTTTACATCAGGTGATATGACACCTTTCCAAGCCA
GTGGTATTGTGATTGCAGGTGTTAAATATCAATTTTTGAGAGGGGATGAT
ATCTTGGCTTTAGGCAAAAAGAAAGATAATGGAGCTGTTACATTGCAATG
TTCAAAGACGGCCGTAGTTATTGGACACACGAAAGAAGGAGGTACACAGG
GAAACACTAATAAAGGAGTTGCAGTCATTGCTGAATATTTAGAGAGTCTT
GGCATGTAGAATACACGTTAAATATTTTTTTGTTGGGCTCCTAATTCAGT
AGCATATGCTTTTACATTCAATTGTTTGGTCTGTTGACTGGAATGACATT
TCCAAATGACTAAAATCTGTAATTAGCTATTTATACTGGTGGAATTCTGA
TGCTGCTTCTTTTCATACACAATATCTTGCTTGATCTTTGTATAATTAAT
TTTTACATTGTCTTTTCACATTTTTGTGACATAGAATATTATTATAGAAT
TTTAAATACTTGGAATAAATCTATTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014279XLOC_014279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025426-exon-sc0000535-1575043694:122108..122322TCONS_00025426-exon-sc0000535-1575043694:122108..122322Clytia hemisphaericaexon
TCONS_00025426-exon-sc0000535-1575043694:116743..117424TCONS_00025426-exon-sc0000535-1575043694:116743..117424Clytia hemisphaericaexon
TCONS_00025426-exon-sc0000535-1510915933:122108..122322TCONS_00025426-exon-sc0000535-1510915933:122108..122322Clytia hemisphaericaexon
TCONS_00025426-exon-sc0000535-1510915933:116743..117424TCONS_00025426-exon-sc0000535-1510915933:116743..117424Clytia hemisphaericaexon
TCONS_00025426-exon-sc0000535-1491911889:122108..122322TCONS_00025426-exon-sc0000535-1491911889:122108..122322Clytia hemisphaericaexon
TCONS_00025426-exon-sc0000535-1491911889:116743..117424TCONS_00025426-exon-sc0000535-1491911889:116743..117424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000535supercontigsc0000535:116743..122322 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3656.6	3835.09	3752.07	4084.18	1052.19	755.419	794.006	827.781	1051.18	882.724	1124.37	830.397	1151.43	934.923	1644.89	1554.94	1216.38	1119.64	1753.32	1502.09	1727.72	1683.47	2932.2	2575.12	625.914	655.928	1895.52	1805.9	3790.77	3612.01
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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