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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025422 ID=TCONS_00025422|Name=TCONS_00025422|organism=Clytia hemisphaerica|type=transcript|length=2514bp
CTCACCTACTGAAGGTCTGGACGATATTCTAAGTGTTAAGACCTTTATGG
TGAAGATCCAACGTATTTTTTGGTTACGCTAAACCAATTTTGAGAGTTGG
AACCTTTATGGCAAAGATCCAGTGTAAATTTTGGTTATCGAGCAGTCTAT
TCTTGAAGATAACTGGATCAAGCTATAGTNATCCAGTGTAAATTTTGGTT
ATCGAGCAGTCTATTCTTGAAGATAACTGGATAAAGCTATAGTTGATCAG
TCATATTGTCTGAGCTTGCTGTCTTTAGGTTGTCCTTATAGCTGGTACGA
GAACCGTCAATTTGAGAAGAAAAATCATCCGGAGCTTCTTTGATTATATC
TGATACACGATTGGACACATTACTTCAGACTGatttatgtCAAAATGGTA
TACAACACGACAACGACCCAATCATGGACAAATACTACCAACAATTCCAC
CAACTTAACAACAATCAAACATTTAATCGAATGCAACAACAACACATCAA
TAAACTGTTCTCAAAGTGACCCACATCCAGCTGCTTCATACAGCGATGGA
CTTTTACCAGAATATTTTCCAACACGCTATCTCATTGGTTTTCATTGTGC
GTACATAATTTTATGGTTAATTGGTTTCCTAGGCAACGGCCTAACATGTT
ACGTCATTATTCAGCGTAAATCAATGAGGCGCGCTATCCACCTCTACACA
TTCAATTTAGCCGTGGCCGATCTTTTGATTTTAAGCGCCTACGTACCAAG
TCAAATGTTGATCATGCAAGACCAGTTCCGTTGGAGATTAGGAAAATCGA
TTTGTAAAATCAATTATGCCATTTTACCGGTAGCCCTGCACGCGTCTGTT
GGAACTTTACTAGCAATTACTATCGATCGGTGCCGTGGGCTTGTCACTCC
GTTCTCATGGCGTTCAGATTCGTTACGGAAAGCTAAAATCTCGATACCAA
TAATATGGGTTTTGTCTTTGGTCTTATCTTCACCTTTATTTGAAGTCTCA
GAGATGGTCGTTATGCCTTCAGGTGAAGCTTACTGTGGCGAATTGTGGCC
AACGCCCAAATCAATGCATtggttctggtctgtaaatttcaCACTTGTCT
TTGCTATACCTCTTATCGTCATAGTAACGACACAAATCATAATGATATAT
GTGGTTGCTAGGGAAACAGCCAATAAGAAACAGAATCAAAGAATGGTTAC
TATGGTAATCGctcttgttgttgtttttaccGTCTGTACTGGATttcaac
atatttattttttcatcggTACTTTTGGTAACATAGCTATGAATCTTGAA
ACACAAACTCTCTTATATGCTCTTTCGAACTACGTTGTTTCTCTACAGGC
AGCTTTGAACCCAATCATCTACGGGACCCTCCGCCGTGACTTTAAGAAAG
CTTTCTTGCATAGCTTAGTAGTTTTACTCATTAAATTTAAACTCCACAAA
GACGTTTTGAATGACAATGGGAAAGAGAGTTTCGCCAATCGCGTATTGAC
AAGTTATTTTTCCGAATCGCACTCCAGGTCGACTGGGAGTCGAAAAATGA
GACAAGTCAGTCAaatgtttaaaaagaaacttgaagaaaatgaaaaacag
gaTCANACAAGTTATTTTTCCGAATCGCACTCCAGGTCGACTGGGAGTCG
AAAAATGAGACAAGTCAGTCAaatgtttaaaaagaaacttgaaGAGAATG
AAAAACAGGATCAAATTGAATTCTATACCGATTCGCCGTATTGTGCACGT
CGCCTATTTGAAGATTCTCCCTTCGCCGGGCGTAGAGAATTCGCAGACGC
CCCGTACGTTGGAAGTGGATTTCATGAAGACTCGCCTTATGTTGGGCGTA
GATACAACGAGAAGCCGCCCTATGTTGGACACAGTATTTATCCTGATTCA
CCCTGCGTCGGGCGTCAGTTTTATGGAGATAACAATAAAAATCTTTATCC
GCCCGATATTCAAATTCATCCGGACTCACCCGATATCGGGAAACTTGATA
CTCCAGATTCGGATGTATCAGAGGACAATTTTAACTGCGATTCGCCTCGA
GTATCGAAAGACTTTTCAATCGCAACACGTAAAATCTCATTACTTTCCAT
CCCTCGTCGTAAGGAAAGTCTATTACCCAGACCGGACGAAGTCCAATTGT
TATCATATAAAGAACTAGCAACGCCCACTCGTACGCCTCTCTTGATGACG
TTACACCGCAATTTAGCAGAGAAATATGGGAACGGTAATATTGATACGGG
CTACGTATCGGCTTCGGATGACGACTTACACTCGTTAGACGACACAAAGA
CGGTTTCGAATGAAACGTTATCTGTTGAAAGTTTAGCAAGATTAAGGGAA
GCCGAAGAAACTGTCTTgtgattttcatgttttttatgtttttcaaattt
ttattttatttaccacatctaaacaatgaaaaataatcatcttataaata
attttACTGTCAGCCTCTCTTATTGTTTTACGATTTTTGAATTCACTGAA
AAGTTGTgtaccta Run BLAST on NCBI protein sequence of TCONS_00025422-protein >TCONS_00025422-protein ID=TCONS_00025422-protein|Name=TCONS_00025422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp
MVYNTTTTQSWTNTTNNSTNLTTIKHLIECNNNTSINCSQSDPHPAASYS
DGLLPEYFPTRYLIGFHCAYIILWLIGFLGNGLTCYVIIQRKSMRRAIHL
YTFNLAVADLLILSAYVPSQMLIMQDQFRWRLGKSICKINYAILPVALHA
SVGTLLAITIDRCRGLVTPFSWRSDSLRKAKISIPIIWVLSLVLSSPLFE
VSEMVVMPSGEAYCGELWPTPKSMHWFWSVNFTLVFAIPLIVIVTTQIIM
IYVVARETANKKQNQRMVTMVIALVVVFTVCTGFQHIYFFIGTFGNIAMN
LETQTLLYALSNYVVSLQAALNPIIYGTLRRDFKKAFLHSLVVLLIKFKL
HKDVLNDNGKESFANRVLTSYFSESHSRSTGSRKMRQVSQMFKKKLEENE
KQDXTSYFSESHSRSTGSRKMRQVSQMFKKKLEENEKQDQIEFYTDSPYC
ARRLFEDSPFAGRREFADAPYVGSGFHEDSPYVGRRYNEKPPYVGHSIYP
DSPCVGRQFYGDNNKNLYPPDIQIHPDSPDIGKLDTPDSDVSEDNFNCDS
PRVSKDFSIATRKISLLSIPRRKESLLPRPDEVQLLSYKELATPTRTPLL
MTLHRNLAEKYGNGNIDTGYVSASDDDLHSLDDTKTVSNETLSVESLARL
REAEETVL Run BLAST on NCBI transcript from alignment at sc0000535:186038..192254+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025422 ID=TCONS_00025422|Name=TCONS_00025422|organism=Clytia hemisphaerica|type=transcript|length=6217bp|location=Sequence derived from alignment at sc0000535:186038..192254+ (Clytia hemisphaerica)
CTCACCTACTGAAGGTCTGGACGATATTCTAAGTGTTAAGACCTTTATGG
TGAAGATCCAACGTATTTTTTGGTTACGCTAAACCAATTTTGAGAGTTGG
AACCTTTATGGCAAAGATCCAGTGTAAATTTTGGTTATCGAGCAGTCTAT
TCTTGAAGATAACTGGATCAAGCTATAGTNATCCAGTGTAAATTTTGGTT
ATCGAGCAGTCTATTCTTGAAGATAACTGGATAAAGCTATAGTTGATCAG
TCATATTGTCTGAGCTTGCTGTCTTTAGGTTGTCCTTATAGCTGGTACGA
GAACCGTCAATTTGAGAAGAAAAATCATCCGGAGCTTCTTTGATTATATC
TGATACACGATTGGACACATTACTTCAGACTGGTAAGTCTTTACTTCcta
atttttcatttcagcaGCTAAAAggagaattaatttttttgaatgtatGC
TATAATGTCAAATGTTAATTTTGGCTTCAAGAGTGATGTATATATTGTGG
CTTCGAGATTGAGTGAATCTTATGTGATCTAGTTTAGTGTGTTACGCAGT
CTTAGCCTCCAATCTAACCTCCATAACTCCAACaccaagaaggggggggg
ggtcagccATCGTTCTAGAAGGCAATAGCTTTGATATTCTATTTCTGCCG
TGCAAACTTGTCAGAAAACCGACAGTAAGAGAGCTTAGGAGTtggtatta
aaaaaaacaactgcAATTACTACGCTTTGATAAACGTTAGACACTCTGGT
ATATAATAGGTAAAGATATTCATTTATTGTCATATATTTTCACCTTACAT
GTCACGTAACAACAGTTTATTAGCACGATTAAGGAGGAGTACTTTGGCGT
TACACTGGCCATATTTATCAGTTTACGTCAACTTAATCCTTAGATTGCTA
TCTCCCTAAGATGGTACATATTGTTCAGATTTAAGTGGGATTTGTACGGA
CAATGAAGTTTGAAGATCTTAATTTCCATTTAAGAATATATCCTGCTAAT
ACTAAGATCAATAGACTTAATTTGAAGGGCTTAGATCCATAGTTATAAGC
AGAACGGTGAAGTAGATTTGTGATCTAATTCAGTGGTTGAGAGTTGATTG
TTGGCTCTTCCTCTTGGAGGTTATGTTTAAGGATAAGTTTAACAggattt
tcttcgagttacttTTTGAAACCAAATTTGTGCATTATCGAGAGTATTAT
AACACATATTCTTGCATCAAAGtggtttgatttgatttgattagaCATTA
GACGTTTTTAAGATCGGTAATTCggtaattttcttcaaattcgaTTCAAG
ATCTAGCTCTAGGTAAATTGTTTTAGTTTGCAGCTAAGTGGTCTTGGTAG
AGTCAAGGCTCACACTTGAATTTCAGTTactaatataatatgagaagtGG
TTAAGTTAGGCTCCATACTTCCCAAAAAGAAGTTAAATATATTATCAATG
AGATGGCATCATTTAGAAATGAGTATTGTCCAACAGGAAAGTATACCTTA
TTTCAGAGGTCATAATAGTGAAAAGGAGAACAATGATTGCTATACAAATA
TGGCTTCAACTCAAGGATTTATTGTGTTGTTAAGTATTCAGCGATTCGGT
CACATTTGCCTTTTTTTAGAATAGGAAAATGGTTTATGTAAAGCCCTTCA
ATAGAAGATTTGCCAAAACCAAGAGCCAACTCAATAGTATTTTCAAGAAG
AAGTTAAGAAGGCCAATGTAGAATTGTAGAAACTTTTTAATTCATTTATT
ACCTAGTTTATgcatgtatcggaggatatcgagggcgacggtaagtgaaa
tcgatactaaacaaagtcgatagttgatgtacggctctatgtttcctttg
ctcacctaaacagacgacgatattttggtgtttttaccgtcatcgagcaa
agtggacggtgattttggagacatgtcaactttgctttataccgtccccc
tcgatttatctcgaatacataaacttgctatcGTAAATTAACCTTGAGTA
ACATTAGTGAAATTTTGGGGTCAGTTTTCGTTGATTGCATTATAGTGAGG
TTTCATATGCCTGAAAAGATGGAGAAATCATCAAAGGAAAAGatgctttt
ttaatttttgttattattcaacaaatgaatgaaattttacCACCTTTGCG
TGTCATAAAAGTTTTAATTTAATTTGGAGTTTTAATCTTTATGGATCANA
CCTTTGTGTGTCATAAAAGTTTTAATTTAATTTGGAGTTTTAATCTTTAT
GGATCACCAATTTGAATACTGGTATTAGAATTCTACATCATAGAAGAATT
AAGTAAAACGTAAACATTGAACTTTTGTGAGTATTGATAGTTAGTGCCCT
GCTAAGGTAGGTATAATGCTGTATAAGTAGAGTGTGTTAGTGTTAGCCTT
GTGAGCTAACAAAATGTTGTTCTGGGGGTGTGATAAATGTAAGAATTTGT
AACTACGGCTTTCTTATGTCTTTACTCTATGAACTCCGATATACTCTCTA
TCCAATATATTCCCTAGATCAAATTATCTTTAGGACCTGATAGCTATATC
AACAACCTTGCGCATAATGATGCCCAAGGTGTGTTGATATTCGCTAGCAT
AGCTAACAGTTAGTGATTTGGTGATTTGACTTGGCAGATTTTCCAATCTA
AAGGTCtgcttagactacacaatatattggtgaACAATATTCAACAATAT
AGTTTGCgtaccgtaatgtacgaagtaaacaacaagttccctattttgaa
aaagaattttctttctatAAACAATCCCCtttatattgttggaatattgc
aaatcgagctgacactATATTGCGGACATCTTATCAATATATCAATATGT
TACCGACACTCAGCAATATACTAtcatatattgtgtagtgtatgtaacCC
TTATCTGTTTCTAAATAATATTAAAGTGTTTTAACGCATGAATATCGTTT
TTGCTAGTACTTCATTTTTAAGAAGATTTAAACCACAAACAAGACTGACT
cgaggtttgcgaggtgacgggtatgtccgagccgaaaatcgaaaatcgac
cctttaaGAGACTggttttgggaccctttgagagactttttcctaaattt
tggtccattttttccaaattttggtttgattttcactaaattttggtcaa
aattcttggaaatcgtgaccctttgagagagaaatttttgatttttttga
ttttgggaccctttcagagactaacttttgaatttgtacccctttgagag
acttttgaggaatgagaaaaggtacccttatgacttgcacatacccggca
cccatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTCGAG
GATGAGTTCCTAAGTTTCATTTCACACATTACTGCCCGAGGAATGAGAAG
GTGAAGCAATTATCTCTCTTGggcatcttctttttgaaacCAATTCGTTC
ATTCTTAATCTGAGTCCCAAGGTTGCTAACAGTGACGATGAGCTATTGGC
AAGCCACCATCTAAGCGGCTCGATTCACAAATTTAGAAAGAAGCCATAGA
agttaaatttttaattatttcttgcttttttttagatttatgtCAAAATG
GTATACAACACGACAACGACCCAATCATGGACAAATACTACCAACAATTC
CACCAACTTAACAACAATCAAACATTTAATCGAATGCAACAACAACACAT
CAATAAACTGTTCTCAAAGTGACCCACATCCAGCTGCTTCATACAGCGAT
GGACTTTTACCAGAATATTTTCCAACACGCTATCTCATTGGTTTTCATTG
TGCGTACATAATTTTATGGTTAATTGGTTTCCTAGGCAACGGCCTAACAT
GTTACGTCATTATTCAGCGTAAATCAATGAGGCGCGCTATCCACCTCTAC
ACATTCAATTTAGCCGTGGCCGATCTTTTGATTTTAAGCGCCTACGTACC
AAGTCAAATGTTGATCATGCAAGACCAGTTCCGTTGGAGATTAGGAAAAT
CGATTTGTAAAATCAATTATGCCATTTTACCGGTAGCCCTGCACGCGTCT
GTTGGAACTTTACTAGCAATTACTATCGATCGGTGCCGTGGGCTTGTCAC
TCCGTTCTCATGGCGTTCAGATTCGTTACGGAAAGCTAAAATCTCGATAC
CAATAATATGGGTTTTGTCTTTGGTCTTATCTTCACCTTTATTTGAAGTC
TCAGAGATGGTCGTTATGCCTTCAGGTGAAGCTTACTGTGGCGAATTGTG
GCCAACGCCCAAATCAATGCATtggttctggtctgtaaatttcaCACTTG
TCTTTGCTATACCTCTTATCGTCATAGTAACGACACAAATCATAATGATA
TATGTGGTTGCTAGGGAAACAGCCAATAAGAAACAGAATCAAAGAATGGT
TACTATGGTAATCGctcttgttgttgtttttaccGTCTGTACTGGATttc
aacatatttattttttcatcggTACTTTTGGTAACATAGCTATGAATCTT
GAAACACAAACTCTCTTATATGCTCTTTCGAACTACGTTGTTTCTCTACA
GGCAGCTTTGAACCCAATCATCTACGGGACCCTCCGCCGTGACTTTAAGA
AAGCTTTCTTGCATAGCTTAGTAGTTTTACTCATTAAATTTAAACTCCAC
AAAGACGTTTTGAATGACAATGGGAAAGAGAGTTTCGCCAATCGCGTATT
GACAAGTTATTTTTCCGAATCGCACTCCAGGTCGACTGGGAGTCGAAAAA
TGAGACAAGTCAGTCAaatgtttaaaaagaaacttgaagaaaatgaaaaa
caggaTCANACAAGTTATTTTTCCGAATCGCACTCCAGGTCGACTGGGAG
TCGAAAAATGAGACAAGTCAGTCAaatgtttaaaaagaaacttgaaGAGA
ATGAAAAACAGGATCAAATTGAATTCTATACCGATTCGCCGTATTGTGCA
CGTCGCCTATTTGAAGATTCTCCCTTCGCCGGGCGTAGAGAATTCGCAGA
CGCCCCGTACGTTGGAAGTGGATTTCATGAAGACTCGCCTTATGTTGGGC
GTAGATACAACGAGAAGCCGCCCTATGTTGGACACAGTATTTATCCTGAT
TCACCCTGCGTCGGGCGTCAGTTTTATGGAGATAACAATAAAAATCTTTA
TCCGCCCGATATTCAAATTCATCCGGACTCACCCGATATCGGGAAACTTG
ATACTCCAGATTCGGATGTATCAGAGGACAATTTTAACTGCGATTCGCCT
CGAGTATCGAAAGACTTTTCAATCGCAACACGTAAAATCTCATTACTTTC
CATCCCTCGTCGTAAGGAAAGTCTATTACCCAGACCGGACGAAGTCCAAT
TGTTATCATATAAAGAACTAGCAACGCCCACTCGTACGCCTCTCTTGATG
ACGTTACACCGCAATTTAGCAGAGAAATATGGGAACGGTAATATTGATAC
GGGCTACGTATCGGCTTCGGATGACGACTTACACTCGTTAGACGACACAA
AGACGGTTTCGAATGAAACGTTATCTGTTGAAAGTTTAGCAAGATTAAGG
GAAGCCGAAGAAACTGTCTTgtgattttcatgttttttatgtttttcaaa
tttttattttatttaccacatctaaacaatgaaaaataatcatcttataa
ataattttACTGTCAGCCTCTCTTATTGTTTTACGATTTTTGAATTCACT
GAAAAGTTGTgtaccta Coding sequence (CDS) from alignment at sc0000535:186038..192254+ >TCONS_00025422 ID=TCONS_00025422|Name=TCONS_00025422|organism=Clytia hemisphaerica|type=CDS|length=1977bp|location=Sequence derived from alignment at sc0000535:186038..192254+ (Clytia hemisphaerica)
ATGGTATACAACACGACAACGACCCAATCATGGACAAATACTACCAACAA
TTCCACCAACTTAACAACAATCAAACATTTAATCGAATGCAACAACAACA
CATCAATAAACTGTTCTCAAAGTGACCCACATCCAGCTGCTTCATACAGC
GATGGACTTTTACCAGAATATTTTCCAACACGCTATCTCATTGGTTTTCA
TTGTGCGTACATAATTTTATGGTTAATTGGTTTCCTAGGCAACGGCCTAA
CATGTTACGTCATTATTCAGCGTAAATCAATGAGGCGCGCTATCCACCTC
TACACATTCAATTTAGCCGTGGCCGATCTTTTGATTTTAAGCGCCTACGT
ACCAAGTCAAATGTTGATCATGCAAGACCAGTTCCGTTGGAGATTAGGAA
AATCGATTTGTAAAATCAATTATGCCATTTTACCGGTAGCCCTGCACGCG
TCTGTTGGAACTTTACTAGCAATTACTATCGATCGGTGCCGTGGGCTTGT
CACTCCGTTCTCATGGCGTTCAGATTCGTTACGGAAAGCTAAAATCTCGA
TACCAATAATATGGGTTTTGTCTTTGGTCTTATCTTCACCTTTATTTGAA
GTCTCAGAGATGGTCGTTATGCCTTCAGGTGAAGCTTACTGTGGCGAATT
GTGGCCAACGCCCAAATCAATGCATtggttctggtctgtaaatttcaCAC
TTGTCTTTGCTATACCTCTTATCGTCATAGTAACGACACAAATCATAATG
ATATATGTGGTTGCTAGGGAAACAGCCAATAAGAAACAGAATCAAAGAAT
GGTTACTATGGTAATCGctcttgttgttgtttttaccGTCTGTACTGGAT
ttcaacatatttattttttcatcggTACTTTTGGTAACATAGCTATGAAT
CTTGAAACACAAACTCTCTTATATGCTCTTTCGAACTACGTTGTTTCTCT
ACAGGCAGCTTTGAACCCAATCATCTACGGGACCCTCCGCCGTGACTTTA
AGAAAGCTTTCTTGCATAGCTTAGTAGTTTTACTCATTAAATTTAAACTC
CACAAAGACGTTTTGAATGACAATGGGAAAGAGAGTTTCGCCAATCGCGT
ATTGACAAGTTATTTTTCCGAATCGCACTCCAGGTCGACTGGGAGTCGAA
AAATGAGACAAGTCAGTCAaatgtttaaaaagaaacttgaagaaaatgaa
aaacaggaTCANACAAGTTATTTTTCCGAATCGCACTCCAGGTCGACTGG
GAGTCGAAAAATGAGACAAGTCAGTCAaatgtttaaaaagaaacttgaaG
AGAATGAAAAACAGGATCAAATTGAATTCTATACCGATTCGCCGTATTGT
GCACGTCGCCTATTTGAAGATTCTCCCTTCGCCGGGCGTAGAGAATTCGC
AGACGCCCCGTACGTTGGAAGTGGATTTCATGAAGACTCGCCTTATGTTG
GGCGTAGATACAACGAGAAGCCGCCCTATGTTGGACACAGTATTTATCCT
GATTCACCCTGCGTCGGGCGTCAGTTTTATGGAGATAACAATAAAAATCT
TTATCCGCCCGATATTCAAATTCATCCGGACTCACCCGATATCGGGAAAC
TTGATACTCCAGATTCGGATGTATCAGAGGACAATTTTAACTGCGATTCG
CCTCGAGTATCGAAAGACTTTTCAATCGCAACACGTAAAATCTCATTACT
TTCCATCCCTCGTCGTAAGGAAAGTCTATTACCCAGACCGGACGAAGTCC
AATTGTTATCATATAAAGAACTAGCAACGCCCACTCGTACGCCTCTCTTG
ATGACGTTACACCGCAATTTAGCAGAGAAATATGGGAACGGTAATATTGA
TACGGGCTACGTATCGGCTTCGGATGACGACTTACACTCGTTAGACGACA
CAAAGACGGTTTCGAATGAAACGTTATCTGTTGAAAGTTTAGCAAGATTA
AGGGAAGCCGAAGAAACTGTCTTgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025422-exon-sc0000535-1491911889:186038..186419 | TCONS_00025422-exon-sc0000535-1491911889:186038..186419 | Clytia hemisphaerica | exon |
| TCONS_00025422-exon-sc0000535-1510915933:186038..186419 | TCONS_00025422-exon-sc0000535-1510915933:186038..186419 | Clytia hemisphaerica | exon |
| TCONS_00025422-exon-sc0000535-1575043694:186038..186419 | TCONS_00025422-exon-sc0000535-1575043694:186038..186419 | Clytia hemisphaerica | exon |
| TCONS_00025422-exon-sc0000535-1491911889:190123..192254 | TCONS_00025422-exon-sc0000535-1491911889:190123..192254 | Clytia hemisphaerica | exon |
| TCONS_00025422-exon-sc0000535-1510915933:190123..192254 | TCONS_00025422-exon-sc0000535-1510915933:190123..192254 | Clytia hemisphaerica | exon |
| TCONS_00025422-exon-sc0000535-1575043694:190123..192254 | TCONS_00025422-exon-sc0000535-1575043694:190123..192254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000535 | supercontig | sc0000535:186038..192254 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00025422 vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 2.500e-22 Identity = 84/397 (21.16%), Postives = 181/397 (45.59%), Query Frame = 2
Query: 557 PEYFPTRYLIGFHCAYIILWLIGFLGNGLTCYVIIQRKSMRRAIHLYTFNLAVADLLILSAYVPSQMLIMQDQFRWRLGKSICKINYAILPVALHASVGTLLAITIDRCRGLVTPF--SWRSDSLRKAKISIPIIWVLSLVLSSPLFEVSEMVV-----MPSGEAYCGELWPTPKSMHWFWSVNFTLVFAIPLIV--IVTTQI--------------IMIYVVARETAN-KKQNQRMVTMVIALVVVFTVCTGFQHIYFFIGTFGNIAMNLETQT--LLYALSNYVVSLQAALNPIIYGTLRRDFKKAFLHSLVVLLI----------------------KFKLHKDVLNDNGKESFANRVLTSYFSESHSRSTGSRKMRQVSQMFKKKLEENEKQD 1603
PE P R + ++++ + GN L YV+ + K+MR +++ +LA++DLLI +P ML W G ICK+ + A+ + T+ I ++R +GLV PF W+ + R+A + ++W++++++ SP++ V ++ + C E W +P + + ++F +PL+V I+ ++I ++ + +E + ++ +R V M++ +V +F VC H+ + + N + T +++A+ + + NPI+Y + +FKK L ++ ++ KF L ++ + + E+F++ + E ++ +K+++ +F+ +L EN D
Sbjct: 38 PE-LPGRAKLALVLTGVLIFALALFGNALVFYVVTRSKAMRTVTNIFICSLALSDLLITFFCIPVTML-QNISDNWLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTN-RRAFTMLGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQKIYTTFILVILFLLPLMVMLILYSKIGYELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIFAIVQIIGFSNSICNPIVYAFMNENFKKNVLSAVCYCIVNKTFSPAQRHGNSGITMMRKKAKFSLRENPVEETKGEAFSDGNIEVKLCE---QTEEKKKLKRHLALFRSELAENSPLD 428
The following BLAST results are available for this feature:
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