TCONS_00025403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025403
Unique NameTCONS_00025403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025403 ID=TCONS_00025403|Name=TCONS_00025403|organism=Clytia hemisphaerica|type=transcript|length=2559bp
gttcttatttttctcttAAATCGTGCCACATATGCTTATGTTTTAAGTTC
TTTATGTATTTCATTGCTTAAAGACCGTCATTTTATCAGCCCATTTGGAA
ACTTGAGCCTTTTTTAATTGCAAAGTAGAATTCAAATAGATCAATCAAAT
CTCAAACAATTATGACCTTACAACTCTCGATTTTCATTATCATAAGGAAG
CTAATCCATTTATTAGATTATATGTTTGAAAAGATTTTAGTTTAGATGAA
ATGACCTTTTCTTTGACAATTAGTCCACTTTGACAGGTTTTTGGTGGGGC
TTCTATGACACTTTCATTTTTCGCTAATTCTTTCTCTAAAAAGAATTAAT
GTGTAGGAATTCGGACTGTTTCAAGCGTATATTATGGGGCAAAAGGAGTG
ATAAACCAAAGGTTAGCCTTACATCAAAATACTCAGGAAAATCCCAGTTA
TTAGAACATCCTGGAACatcttttgaacattttcatgCTTTAAACCGAAT
AAAAAAGGTTAAACATGTAGAAAACATATAACatgattttttgtttaatt
ctTGAACAATGCATAAAATCGCCTCATAAAATGAGCCTCATCTACCCTCT
TATACTTAGGCTCATGAACGACTTGAGGCTAAAATTGGCAAAAGTgctaa
aaaaaagaattctacTAGTTCAATTATTGTTAGTCCTTGCAAAAACGttg
ttatttttttagtttttatctttttaacatGTCTTTTGCAAACCTGAGAC
TTGATTTCTCTCCTGAAGTTTGAGGTATAAAATTACTATCCCTAGCGGAC
TTCTGTATTTCTATTAAAATCAACATAGTTTCTTATTTAATGTGAATGTT
GTATACACAGATgacattatcaaaatattagaTTGATACAaaccaaagat
tttttttataaactcaCAAAGCAAACACCTTGAACAGACTTGCTATTACA
GaaagaatatcaaattttgtTGGCTACATTTTggatacaattttttttgt
tgctgGCACAAGAGATGGGATGCTCAAGCTCGGTCAAAGTCAAACCTACA
ACGAAGGGAAATGACAAAGACACTCAATCGAACGGTAATCACATACGTGG
AGATCGTCTCTCCATCGTAGACGCTCGTAAACGGAGAGAAGAAGAAAGTA
GAAGTCGTTTGCGTAGACTCAGTGAACTTGCACCAGAGGAAGTTAATAAA
GTGAGAAGAAACTCCTCAAGACAATCAACGCCAAATGTGAATTCCGTACC
TGAAGAAGGCACCCCATCTCCAAAAGATCACATTTTGTGCGAGCAAAATA
CAACGCCACAAAACATCgtcaaaaagaaaacgaaacGTAAGAAAAAACAC
ACACCCGTACAAGAACTTGAGaatgaaaacgaaaacgaaagtgaaagtga
aagaacTTATAATGAATATTCTCCAAACAAGACTTCCAACCAAAAACTGG
AGTATGATCAGAACCTCGTTGAAATCCTCAGACTGTCCACAGACTCAgaa
gatttggaaaaagaaaaccAGATATTAGAGGATATGAATAAACAATCACG
GGatcaaaacaataaattaaaCGCGAGTCTTGATAGTACACATTTGAGAT
CGAACGCTAATTTCCTTGTTAATGATATCATGTCGAAAGCTATGTTACAA
GTTAAAAACGATGAAACGGAAGATAAAAACGATGAAAACCGCTCACCTCA
AACTACAGCCGATTTACCGAAACATTCTAGTACCCTAAAAGACGAACAAC
GGATAAATACTCGCAATGAACCACAGCCTCCGGTTTATTTACCGGGCAGT
GCGACCAATGACGATGAGAATAGTGCAAGTGTGGTCGTGGACGAACGTGC
AAGGACTGTCGTTGATCAAATTTTAAGTAACGCTTTATTTGTCGTCAAAA
ATGAGAATACGTGAAAGTTGGGATGTATTTTTTGAATCTATGTTTTGGAG
AATGCGGAGAGGGtcaagatctttttcttggctTTTTAGCAATATCTTGA
ATGGCTGTGACATGGAAAGATTTAACGAGATTTACTTTTTCCTCGCGCTT
TTAAACCTTCATAGTATAGCAGTTTCAATCAGTTAAAAAGAAAGTTTAGG
CAGAAGACAAAATCGAGAATGTTAATATAAAAAAATGGTGGATATGACAA
ATAAATTCTCAATTGTTTATCTTTTAGACCGGCGGAGAACTAGTTTCTCT
TGTTTCAACCTTTACAAGCAAGCAGTATAGTggctttttgttttattttc
ctcCTTATATGACCCCTTCGAACTTCCAGAGGAAATGTTTTCTAAAAGCC
TTGAAGGGGGTAGGTCATCTTGTCATCTTTAGAAAGTCTATTTTTAAATT
TCCtggtttttcttctgatttaGTTTCTAGAAATGGTTGATGTGTTTTCG
AAATTGGaatattttatgctgacgtAGGCATAagcatctttttgaaaata
ttatttgcaAGAATTACTTCCAGGAAACATCTCCAAAAGTATTCGAGGTT
TATTTGATTCCCTTGACTAGAtattgagtttgaaattttcgctGACTCAG
CAAATAACG
Run BLAST on NCBI

transcript from alignment at sc0000533:196538..202104-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025403 ID=TCONS_00025403|Name=TCONS_00025403|organism=Clytia hemisphaerica|type=transcript|length=5567bp|location=Sequence derived from alignment at sc0000533:196538..202104- (Clytia hemisphaerica)
GTTCTTATTTTTCTCTTAAATCGTGCCACATATGCTTATGTTTTAAGTTC
TTTATGTATTTCATTGCTTAAAGACCGTCATTTTATCAGCCCATTTGGAA
ACTTGAGCCTTTTTTAATTGCAAAGTAGAATTCAAATAGATCAATCAAAT
CTCAAACAATTATGACCTTACAACTCTCGATTTTCATTATCATAAGGAAG
CTAATCCATTTATTAGATTATATGTTTGAAAAGATTTTAGTTTAGATGAA
ATGACCTTTTCTTTGACAATTAGTCCACTTTGACAGGTTTTTGGTGGGGC
TTCTATGACACTTTCATTTTTCGCTAATTCTTTCTCTAAAAAGAATTAAT
GTGTAGGAATTCGGACTGTTTCAAGCGTATATTATGGGGCAAAAGGAGTG
ATAAACCAAAGGTTAGCCTTACATCAAAATACTCAGGAAAATCCCAGTTA
TTAGAACATCCTGGAACATCTTTTGAACATTTTCATGCTTTAAACCGAAT
AAAAAAGGTTAAACATGTAGAAAACATATAACATGATTTTTTGTTTAATT
CTTGAACAATGCATAAAATCGCCTCATAAAATGAGCCTCATCTACCCTCT
TATACTTAGGCTCATGAACGACTTGAGGCTAAAATTGGCAAAAGTGCTAA
AAAAAAGAATTCTACTAGTTCAATTATTGTTAGTCCTTGCAAAAACGTTG
TTATTTTTTTAGTTTTTATCTTTTTAACATGTCTTTTGCAAACCTGAGAC
TTGATTTCTCTCCTGAAGTTTGAGGTATAAAATTACTATCCCTAGCGGAC
TTCTGTATTTCTATTAAAATCAACATAGTTTCTTATTTAATGTGAATGTT
GTATACACAGATGACATTATCAAAATATTAGATTGATACAAACCAAAGAT
TTTTTTTATAAACTCACAAAGCAAACACCTTGAACAGACTTGCTATTACA
GAAAGAATATCAAATTTTGTTGGCTACATTTTGGATACAATTTTTTTTGT
TGCTGGCACAAGAGATGGGATGCTCAAGCTCGGTCAAAGTCAAACCTACA
ACGAAGGGAAATGGTAAGTTGTGTCAATTGATTTGTTTCTCATTTTTTAT
CTGTTTTTATAAGCTCTCCAGAAAAAATCTGCTAATGGGGAATAGAGGAT
ATATTAATAAATTATCTGCCCAACTTTGACAATAACAATTTTCCCCAAAG
ACATATAGTATGGCAGTTTGTTTTTCGGTACCCCTGGACAATTTATCTGT
ATAAAAGTTGAGTAAAAAAGGGTATTTTATATTCGCATTTTTATCGATAT
TTTGCCACTGAGTTATTATACATAGTTTTTGACCAAACTGCTATACTGTA
TGTATCTGGAATCACTAATTCTTAGGCTGTAAAATTTTCATTTGAATTAC
ACTTGACGACGACTGTTAATTTTTCTAAATATTAAGCTTCATAAATTGGG
AAATTACCACTAATCTTTTTCCTTAGGGAAATCCTAATACACGTTTTTCT
TTATGAGAACAAATTATATATAAGAAAATTAGGCTTCGATTGCCAAAATG
CTAAGAACAAGTTAAGAACATTTTAAGGCTTTGGGACTCAAAGATACCCG
ACTTTTTAGGAAAATGGACAAACATCTCACAAAATGGGTAGAATAAGAAC
ATGTTAAGAACATCTTTAGGCTTGAAACTCAAAAAGTTAAGAACATCGAA
AGGCTTTAAAGATTTTGGATGTTCTTATAAAAAAACGTGTATCTGAATTT
CACCAAAATCATTACTAGTATCAAGTAAAAGAAAACACAAGTGTGTTTAA
AGTGTCTACTTTTGAAATCAGACCTTACCGTGACCCCTAAAAATAGTTAT
TTTGAGCGGTAACCATGGAAACGGTCGTCTCTTTCATGTAACAAGATATT
TATATATATATTTGCTCTAGTTCAAGAAACTTCATCATAAACAATGACTA
TTAGAGAGTTTATTCCCCCGCAAATTTTGCTTATAAATTATCATTTCTAA
TTATGGAATTTCGTAATATCCTAACGCTTATTATAGATTTGTTGTCTATT
TGTCAAAAAATTGAGTAATTCTTCTTTTCACATCCAATTCTCGCTTATTT
TTGATAATTGCATTGTTCCTTTATGATTAATGATTTTATAAACTAATGAC
GTCACAGGAAGACTTGGTTCCAATATCCCTGCTAACCATGCAACTTGTAA
ACTTATCAAAGCAAAGTATTATAGTAAAATGATTAGTATGTTGCAGAATA
ACCAGTTAAAGAATCTTGACGTAGAGTGCATATTTCTTTACCCTTTAGTC
TTACTCCTACACGTTTTTTTTATAAAAACATCCAAAATTTTTGAAGCCTT
CGGATGTCCTTAACTTTTTAAGTTCCAAGCCTAATAATGTTCTTAACATG
TTCTTGGTTTTCACCATTTTTTGAGCAATTTCGTCCATTTTCCTAGGAAA
TTGGGTGTTTGATTGGGACTCAAAAAGCCTTAAAATGTACTTAACTTGTT
CTTAACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGCTTGTTTTTA
TAAAAAAAAACGTGTAGTCTTAACTCTTACTCTTTTACACGGCATTACGA
GTGGTTGACCTTGTTTCTGTGACCTTTTTTGATTTATGATGCGGGAATTT
TGCAATATAATTTGCTAGCTTGGGAAAAAGCCATTTTGAGTCACAATTTG
ACTTCTCAGCCACCTAAATCACAAACCTACGTATACTGGTCGATAAATAA
CGTTAAATAAATAATGATAATGAAAGGAAAAAACCCTACTGCTTTGGTTG
GATTAAAAAAGTCATCAACTGGAAATTACGTTCTGTAATAATGGACTCCT
CAACCGTGCATTTTCTCATGTTATTTTTCGTGTAATGCTAAGCCTGCACA
AATGCTAATTCCTTACATGCTGCTTATTTAAACCCAGCTAATTGTTTTCC
CTTCCATTCTGTGGTTTGTTTGACGTCAGTAAAAGATATCGGTGAATGTT
TTTCTTTTTCTTTTTTCCCATGAGTCATGTCTGAGACTGACTGAAAATTG
ATGCACAAACCTTCAAATTAACCGAATTCTAACAGTACAATCTTTGGCTT
TAGTTACTTCTTGTATCTTTCACGTTAAATACTTTAATATTTTACTTTAG
CTAAAATGAAATCCAAGTACAGTTCAGTCTTCATAACTCGAACCTCTACA
ACTCGAATGTCTCCTTATCTCTTGTTCCCTCACTTAGTATTGTCTAATAT
AAACCGTCACCTCCATAACTCGAAATTTCGATAATTGGAACAAATTTGTG
TTCCCCGTGCGTGTATTCGAGATATGGAGGCTCAGTTTTACCGTTATTAT
TCTTAAATAAATAAAACTCATTTCAATTCGTAGATTTCCAATTCCCTTAA
AGCTTATAGTCAATTATTAAAGAATTTTCCCAAAATTGGTATAACCTTTG
TCGATGATGATATGAGTGATATCAGTGATAATAAACATCCACCAGTTCCT
ACTCCTATGTATTTCAATCATTCTTTCTTTACTTCTTTTAGACAAAGACA
CTCAATCGAACGGTAATCACATACGTGGAGATCGTCTCTCCATCGTAGAC
GCTCGTAAACGGAGAGAAGAAGAAAGTAGAAGTCGTTTGCGTAGACTCAG
TGAACTTGCACCAGAGGAAGTTAATAAAGTGAGAAGAAACTCCTCAAGAC
AATCAAGTAAGTTAACCTTTCATTACCTTTCTGATGACTCCGATGAGAAA
AATGGGTTGTTTGGTAAAAGTTTGGTAGTTTTATTATTACCAGGGAACGG
ATACTGAAATAGTAAAAAATTCCTTATCATAAATTTGAAGTCACTTCTCT
ACCATCCCCAATTTTATCAAATTAAGAAGTTCAAAAAGTACATCTTATTT
AAACGTCAGTAACCGACAAATAAACCTATGAAAGTTACGCCTATTTAACT
GCTAAGTTCCTTGTCTTAATTGTGTCTTTAATGTATCTTAATATCAAAAC
CTCAAAGTGGTTTTCTCACAACCTAAAATAGTTCATTACTCTTTTACACG
GGGTTTTACGCATATACAGTTAAAACCGTATATAGTTATAACCGCTTCCG
GAAGCAAGTAAAAGTAACTTTCATGTTTTCAATGAATTTAAAGTTTTGCC
TTAATCGTCAGCTCTATTTGCCCTTTATTTTGGTTAGAATCATTTTCCAC
TACGGCATTGTTTACGTGCAGAGTTTCTCTTTTTAGCGCCAAATGTGAAT
TCCGTACCTGAAGAAGGCACCCCATCTCCAAAAGATCACATTTTGTGCGA
GCAAAATACAACGCCACAAAACATCGTCAAAAAGAAAACGAAACGTAAGA
AAAAACACACACCCGTACAAGAACTTGAGAATGAAAACGAAAACGAAAGT
GAAAGTGAAAGAACTTATAATGAATATTCTCCAAACAAGACTTCCAACCA
AAAACTGGAGTATGATCAGAACCTCGTTGAAATCCTCAGACTGTCCACAG
ACTCAGAAGATTTGGAAAAAGAAAACCAGATATTAGAGGATATGAATAAA
CAATCACGGGATCAAAACAATAAATTAAACGCGAGTCTTGATAGTACACA
TTTGAGATCGAACGCTAATTTCCTTGTTAATGATATCATGTCGAAAGCTA
TGTTACAAGTTAAAAACGATGAAACGGAAGATAAAAACGATGAAAACCGC
TCACCTCAAACTACAGCCGATTTACCGAAACATTCTAGTACCCTAAAAGA
CGAACAACGGATAAATACTCGCAATGAACCACAGCCTCCGGTTTATTTAC
CGGGCAGTGCGACCAATGACGATGAGAATAGTGCAAGTGTGGTCGTGGAC
GAACGTGCAAGGACTGTCGTTGATCAAATTTTAAGTAACGCTTTATTTGT
CGTCAAAAATGAGAATACGTGAAAGTTGGGATGTATTTTTTGAATCTATG
TTTTGGAGAATGCGGAGAGGGTCAAGATCTTTTTCTTGGCTTTTTAGCAA
TATCTTGAATGGCTGTGACATGGAAAGATTTAACGAGATTTACTTTTTCC
TCGCGCTTTTAAACCTTCATAGTATAGCAGTTTCAATCAGTTAAAAAGAA
AGTTTAGGCAGAAGACAAAATCGAGAATGTTAATATAAAAAAATGGTGGA
TATGACAAATAAATTCTCAATTGTTTATCTTTTAGACCGGCGGAGAACTA
GTTTCTCTTGTTTCAACCTTTACAAGCAAGCAGTATAGTGGCTTTTTGTT
TTATTTTCCTCCTTATATGACCCCTTCGAACTTCCAGAGGAAATGTTTTC
TAAAAGCCTTGAAGGGGGTAGGTCATCTTGTCATCTTTAGAAAGTCTATT
TTTAAATTTCCTGGTTTTTCTTCTGATTTAGTTTCTAGAAATGGTTGATG
TGTTTTCGAAATTGGAATATTTTATGCTGACGTAGGCATAAGCATCTTTT
TGAAAATATTATTTGCAAGAATTACTTCCAGGAAACATCTCCAAAAGTAT
TCGAGGTTTATTTGATTCCCTTGACTAGATATTGAGTTTGAAATTTTCGC
TGACTCAGCAAATAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014267XLOC_014267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025403-exon-sc0000533-1575043694:201042..202104TCONS_00025403-exon-sc0000533-1575043694:201042..202104Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1575043694:198399..198563TCONS_00025403-exon-sc0000533-1575043694:198399..198563Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1575043694:196538..197868TCONS_00025403-exon-sc0000533-1575043694:196538..197868Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1510915933:201042..202104TCONS_00025403-exon-sc0000533-1510915933:201042..202104Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1510915933:198399..198563TCONS_00025403-exon-sc0000533-1510915933:198399..198563Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1510915933:196538..197868TCONS_00025403-exon-sc0000533-1510915933:196538..197868Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1491911889:201042..202104TCONS_00025403-exon-sc0000533-1491911889:201042..202104Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1491911889:198399..198563TCONS_00025403-exon-sc0000533-1491911889:198399..198563Clytia hemisphaericaexon
TCONS_00025403-exon-sc0000533-1491911889:196538..197868TCONS_00025403-exon-sc0000533-1491911889:196538..197868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:196538..202104 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103968	0.195922	0	0	0.144898	0.0377	1.03079	1.56027	1.62579	2.27045	1.83046	3.97897	6.86602	5.58517	4.47528	4.05825	0.379498	0.982658	4.64105	1.73463	0.616693	0.422298	0.821391	0.292165	0.434817	0.754617	0.443602	0.107295	0.835169	1.24475
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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