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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025399 ID=TCONS_00025399|Name=TCONS_00025399|organism=Clytia hemisphaerica|type=transcript|length=546bp
CACGCAATACCAGGATAAAGGTACATCAAAGacaTCGTCTACAAATGATG
GCACCATTAGAAAAACGACATTACACTTCCTTTCTCATCAAAGATATTAT
TGATAATGTTGAAGAAGATGGGGCACAGGTTGGCACTGATACTCAAAACG
AAGAATTTGATGACGACGACGAATCGCTGACATCAGCACAATCCGAAGAA
TTCGATGAACATCAAACAAATAGCAGCAATAGTATGACCACAGATGAAAG
TTCATCATACAACAATGAAGAGGATTCACCAACAGCTTCGGTTAATTCAA
ACAACAATAACATGGATATCAAACGTAAATATCCAAGAGAGAGAACAACA
TTCACCATTGCTCAACTCAAATTCTTAGAAGAACTATTCtgtgtcaaaaa
atatttaacacTAATCGAACGCAGTAAAGTTGCACTGCATTTAGAGTTGA
GCGAACGTCAAGTTAAAACTTGGTTTCAAAACCGACGCACTAAATACCGA
CGTCAAAAGACAGTAAATTCGCCCGTTTTATCATTATCGGTTGAAA Run BLAST on NCBI transcript from alignment at sc0000533:124053..127010- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025399 ID=TCONS_00025399|Name=TCONS_00025399|organism=Clytia hemisphaerica|type=transcript|length=2958bp|location=Sequence derived from alignment at sc0000533:124053..127010- (Clytia hemisphaerica)
CACGCAATACCAGGATAAAGGTACATCAAAGGTAAGTTATAATTATTTTC
AGGATGCATCCTGATGTTTTTTATTTTTTTCNCCCCTTTAGCGTTTTTTC
AACGCTCAAAAAACGTATCATATCTTGTCAACAGGGGAAATTTCAATTCT
GAAAAATGACCTGTTAGATTCTGTGACGAACATGGAAAAATATCTCATTT
GGTTTTCTACGCCGTGAACACCTTATAACAGTATTCATAAGCTCCATTTT
AAAATCTTTTTAAATTTCAGAAACCTTTCGGCTTTGAAAGTTCATTATTA
GTTTCATTTATATTTATAACCATATAATAACCATATAAAACGCCCTGAAA
CCTTTAGTCATCATTGAGAATTATCTGGCACCCAGATGCATCTTCGTTTT
CAGGGATCGATGGGTCCAAACGAAATATTTTTAGTTTTACGCGTAAAAGT
TAGTTGAACCCGATTGGGGTTGCGGTACATCAAAAGCCGACTATCATTCT
TCTCCGATGGGAAATTGGCCTGTTCCTTAAAGTTTTAGCGTAAAATAAAA
TTTCAAAGGATATTTTTAATGATAATGCGATTACTATTATTGCCTCTGGG
ATTCCCAAACCATATTTAAATTAACCTTGTTGAAGACGAACCCAAACATT
CCCAGCGTGCACAAAATATCAAAATGAGGAATGTGCCGCTGCTCAGGGTA
CCTTTTTCACCTCCATGAGTCCAAGGTTGGGTCGTAAAAACAACAAAATA
GTAAAAATTTGTCCCTTTTAGGGTACATTTTTGGAGGACTTTGGATAAAA
AAATTTTGAGAACATTGAGAACATTTTGGAATTTTATTCCCATTCAGGGT
CACTTTTTTCTCAAACTTTGGCAAAATTTTCAAAAAGAAAGTCCCGTGTA
GGGTCAATTTTCAAACCTCAGTAGCACACCTCCGTCGGTCAGCACGGGTA
GTATCCCCTCCCCAGGGACTTTGCTATCAATAGACTAATTGTAGAGGGCA
GCAACCAAGGTTGAAACTCAATACATTCGTCTATGTTACCTTTAAAAACT
ATATTAAGATCATCATAGGAACTTTTTAAGAGTTTTCGTTTTATTGTTTA
AAATAAAACTTGGCTTAATGAGTTGTTAGATGGATTTGACCAAAGTATTT
CTAGCAGGTCGTAGACACAAAACTCAAACTTTTAACACATTGATTTTTCA
TTTCGTCAATATAGCGACACAACATAAGAATAGACTCTTTCATTTTTTAT
TGTATCTTTTTAGTCAGTGCTTTGTCTCTTTGTCAATGATAGATTTCTTA
TGACATTTGAAAGCTTAGACTCCAGGTTGGGTAATATAACAATCCAGAAG
GATCAAGTATTTCAAGTGAACGCGCTCTAATAACAATTAGACCACACGCA
ATACCAGGATAAAGGTACATCAAAGGTAAGTTATAATTATTTTCAGGATG
CATCCTGATGTTTTTTATTTTTTTCCAAGTAGGTATGCAAATACTCAGGA
CCCTACTTGTCACCAAATTTCTTGAAGGTCTTCGGCAAAAGATATTTCAT
TTGCAACCAACTGTACCTTAGGTTAGAAGATGCTATCGTCCGTTTACTGA
TCAGTAAACGCAAGAAAGTATGTGCGCAGAGTCAGGGCGTCAGAGTGGTT
TACGGGAAAAATAGTGGCGGTAGAGTTTTGGAACACCCTGTAAACACCTC
CATCACTGTTTACTCTGCCCCGAACTAAACTCGTTTTCAAATTTATCCCG
CTTCTAACTGAATTATCCCCTTTTTCAGTGATAATGTGCAGACGATAGGA
TCGTCTACCCTAGGTATTAGTCTTTGAAAGTTTTTCACTCTTCTGTTTTC
CTACATAACTAAAGTTTAGCAGTAAGGACATTCTACTCATTCTTTTACAA
TAGCCCGATACTTCAAATAGTCGATCGCTTCCTCATTCTACTTTTTTTTC
GCTGCAAGATTTGATAAGTACAGTTGACTCTTTCTAGTTCGATCTTCGAG
GGATACCAAAAATTCGAACTAGAGAGAGATTATTTTACGTGGCTTGCCCT
TTGACGGGAACTTAGAATCAGTTTGAATTAGAGAAAGATTCGAATAATAG
AAGTTCAAATTAGTGAGAGTTCACAGTAAACTCATGAAAACTTTTTTTAT
TTTCAAGACATCGTCTACAAATGATGGCACCATTAGAAAAACGACATTAC
ACTTCCTTTCTCATCAAAGATATTATTGATAATGTTGAAGAAGATGGGGC
ACAGGTTGGCACTGATACTCAAAACGAAGGTAAATGCTTTTCTTCTAACT
CTATATCCAAAGAGATTCCATGACTTTTTTGACCAAGATTCCAATCATGA
CAACCTGTCTTCTTCATAATTTTGTACATATAATTCATATCTTGCCAGAG
TCCAGAATGCTTGTACAAATTTGTGCTCTCCTTTATACTATCTCTAGCTT
TCTTCTTTTTGACACACAAAAAAGTTTCACTGTCTATCAAGAAAATTTGA
GCTTTGCTTTTTTTAAATATCGTCCAAGGTGAATCTTAACTCTCTAATTT
TTTTACGGGGTATAGAATTTGATGACGACGACGAATCGCTGACATCAGCA
CAATCCGAAGAATTCGATGAACATCAAACAAATAGCAGCAATAGTATGAC
CACAGATGAAAGTTCATCATACAACAATGAAGAGGATTCACCAACAGCTT
CGGTTAATTCAAACAACAATAACATGGATATCAAACGTAAATATCCAAGA
GAGAGAACAACATTCACCATTGCTCAACTCAAATTCTTAGAAGAACTATT
CTGTGTCAAAAAATATTTAACACTAATCGAACGCAGTAAAGTTGCACTGC
ATTTAGAGTTGAGCGAACGTCAAGTTAAAACTTGGTTTCAAAACCGACGC
ACTAAATACCGACGTCAAAAGACAGTAAATTCGCCCGTTTTATCATTATC
GGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025399-exon-sc0000533-1575043694:126980..127010 | TCONS_00025399-exon-sc0000533-1575043694:126980..127010 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1575043694:124732..124853 | TCONS_00025399-exon-sc0000533-1575043694:124732..124853 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1575043694:124053..124445 | TCONS_00025399-exon-sc0000533-1575043694:124053..124445 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1510915933:126980..127010 | TCONS_00025399-exon-sc0000533-1510915933:126980..127010 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1510915933:124732..124853 | TCONS_00025399-exon-sc0000533-1510915933:124732..124853 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1510915933:124053..124445 | TCONS_00025399-exon-sc0000533-1510915933:124053..124445 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1491911889:126980..127010 | TCONS_00025399-exon-sc0000533-1491911889:126980..127010 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1491911889:124732..124853 | TCONS_00025399-exon-sc0000533-1491911889:124732..124853 | Clytia hemisphaerica | exon |
| TCONS_00025399-exon-sc0000533-1491911889:124053..124445 | TCONS_00025399-exon-sc0000533-1491911889:124053..124445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000533 | supercontig | sc0000533:124053..127010 - |
Blast
The following BLAST results are available for this feature:
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