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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025397 ID=TCONS_00025397|Name=TCONS_00025397|organism=Clytia hemisphaerica|type=transcript|length=1306bp
CTTATGACATTTGAAAGCTTAGACTCCAGGTTGGGTAATATAACAATCCA
GAAGGATCAAGTATTTCAAGTGAACGCGCTCTAATAACAATTAGACCACA
CGCAATACCAGGATAAAGGTACATCAAAGacaTCGTCTACAAATGATGGC
ACCATTAGAAAAACGACATTACACTTCCTTTCTCATCAAAGATATTATTG
ATAATGTTGAAGAAGATGGGGCACAGGTTGGCACTGATACTCAAAACGAA
GAATTTGATGACGACGACGAATCGCTGACATCAACACAATCCGAAGAATT
CGATGAACATCAAACAAATAGCAGCAATAGTATGACCACAGATGAAAGTT
CATCATACAACAATGNAATCGCTGACATCAGCACAATCCGAAGAATTCGA
TGAACATCAAACAAATAGCAGCAATAGTATGACCACAGATGAAAGTTCAT
CATACAACAATGAAGAGGATTCACCAACAGCTTCGGTTAATTCAAACAAC
AATAACATGGATATCAAACGTAAATATCCAAGAGAGAGAACAACATTCAC
CATTGCTCAACTCAAATTCTTAGAAGAACTATTCtgtgtcaaaaaatatt
taacacTAATCGAACGCAGTAAAGTTGCACTGCATTTAGAGTTGAGCGAA
CGTCAAGTTAAAACTTGGTTTCAAAACCGACGCACTAAATACCGACGTCA
AAAAACAGTAAATTCGCCCGTTTTATCATTATCGGTTGAAAATAATCCGT
TTCTCAAATTATCGGATCACTCAGCCGCGTCACATTTTGTTGACATGGTT
TTACACAGAGAACCGGTTAGTCCAACAAATTTAATTGATCCATCAGCCGT
ATTTCCAGCTCAGCAACAAAACTATAAGCCCTTAGCCATGAACACTTATC
CAAACAGGCTGACAAGTCCAACTTTTCATTATGAACAAGATTTAATGACA
AATCTACAATCTGGAGTTAGAAATATGACTTCCAGGCTTACTACACCACC
GTCGCCACCTGTTTCGAGCTACGAGCACGGGCTAGCGAACAAGTATCGTA
GAAGAGGATCAGAGCCTGCTCGGTTGCCGTCAGTTTATGATGCAAATTTA
TCGTTGTGTTTTTCAAGGAGTTGTGTTTCTTCATTATGTTACAATCACAA
ATACACTTCAAATACACCAGTGAAAGAACCGtgaatacttttttttacta
cTATAGTCATATCATTATTATTTGAGTTTATAATTTTTCTGACCTTAAGG
AGGGAAGTTAAAATCTTCCATTTTGGCGCAAATACGAGTCTTAATTAATA
GAGCCA Run BLAST on NCBI transcript from alignment at sc0000533:122863..127108- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025397 ID=TCONS_00025397|Name=TCONS_00025397|organism=Clytia hemisphaerica|type=transcript|length=4246bp|location=Sequence derived from alignment at sc0000533:122863..127108- (Clytia hemisphaerica)
CTTATGACATTTGAAAGCTTAGACTCCAGGTTGGGTAATATAACAATCCA
GAAGGATCAAGTATTTCAAGTGAACGCGCTCTAATAACAATTAGACCACA
CGCAATACCAGGATAAAGGTACATCAAAGGTAAGTTATAATTATTTTCAG
GATGCATCCTGATGTTTTTTATTTTTTTCNCCCCTTTAGCGTTTTTTCAA
CGCTCAAAAAACGTATCATATCTTGTCAACAGGGGAAATTTCAATTCTGA
AAAATGACCTGTTAGATTCTGTGACGAACATGGAAAAATATCTCATTTGG
TTTTCTACGCCGTGAACACCTTATAACAGTATTCATAAGCTCCATTTTAA
AATCTTTTTAAATTTCAGAAACCTTTCGGCTTTGAAAGTTCATTATTAGT
TTCATTTATATTTATAACCATATAATAACCATATAAAACGCCCTGAAACC
TTTAGTCATCATTGAGAATTATCTGGCACCCAGATGCATCTTCGTTTTCA
GGGATCGATGGGTCCAAACGAAATATTTTTAGTTTTACGCGTAAAAGTTA
GTTGAACCCGATTGGGGTTGCGGTACATCAAAAGCCGACTATCATTCTTC
TCCGATGGGAAATTGGCCTGTTCCTTAAAGTTTTAGCGTAAAATAAAATT
TCAAAGGATATTTTTAATGATAATGCGATTACTATTATTGCCTCTGGGAT
TCCCAAACCATATTTAAATTAACCTTGTTGAAGACGAACCCAAACATTCC
CAGCGTGCACAAAATATCAAAATGAGGAATGTGCCGCTGCTCAGGGTACC
TTTTTCACCTCCATGAGTCCAAGGTTGGGTCGTAAAAACAACAAAATAGT
AAAAATTTGTCCCTTTTAGGGTACATTTTTGGAGGACTTTGGATAAAAAA
ATTTTGAGAACATTGAGAACATTTTGGAATTTTATTCCCATTCAGGGTCA
CTTTTTTCTCAAACTTTGGCAAAATTTTCAAAAAGAAAGTCCCGTGTAGG
GTCAATTTTCAAACCTCAGTAGCACACCTCCGTCGGTCAGCACGGGTAGT
ATCCCCTCCCCAGGGACTTTGCTATCAATAGACTAATTGTAGAGGGCAGC
AACCAAGGTTGAAACTCAATACATTCGTCTATGTTACCTTTAAAAACTAT
ATTAAGATCATCATAGGAACTTTTTAAGAGTTTTCGTTTTATTGTTTAAA
ATAAAACTTGGCTTAATGAGTTGTTAGATGGATTTGACCAAAGTATTTCT
AGCAGGTCGTAGACACAAAACTCAAACTTTTAACACATTGATTTTTCATT
TCGTCAATATAGCGACACAACATAAGAATAGACTCTTTCATTTTTTATTG
TATCTTTTTAGTCAGTGCTTTGTCTCTTTGTCAATGATAGATTTCTTATG
ACATTTGAAAGCTTAGACTCCAGGTTGGGTAATATAACAATCCAGAAGGA
TCAAGTATTTCAAGTGAACGCGCTCTAATAACAATTAGACCACACGCAAT
ACCAGGATAAAGGTACATCAAAGGTAAGTTATAATTATTTTCAGGATGCA
TCCTGATGTTTTTTATTTTTTTCCAAGTAGGTATGCAAATACTCAGGACC
CTACTTGTCACCAAATTTCTTGAAGGTCTTCGGCAAAAGATATTTCATTT
GCAACCAACTGTACCTTAGGTTAGAAGATGCTATCGTCCGTTTACTGATC
AGTAAACGCAAGAAAGTATGTGCGCAGAGTCAGGGCGTCAGAGTGGTTTA
CGGGAAAAATAGTGGCGGTAGAGTTTTGGAACACCCTGTAAACACCTCCA
TCACTGTTTACTCTGCCCCGAACTAAACTCGTTTTCAAATTTATCCCGCT
TCTAACTGAATTATCCCCTTTTTCAGTGATAATGTGCAGACGATAGGATC
GTCTACCCTAGGTATTAGTCTTTGAAAGTTTTTCACTCTTCTGTTTTCCT
ACATAACTAAAGTTTAGCAGTAAGGACATTCTACTCATTCTTTTACAATA
GCCCGATACTTCAAATAGTCGATCGCTTCCTCATTCTACTTTTTTTTCGC
TGCAAGATTTGATAAGTACAGTTGACTCTTTCTAGTTCGATCTTCGAGGG
ATACCAAAAATTCGAACTAGAGAGAGATTATTTTACGTGGCTTGCCCTTT
GACGGGAACTTAGAATCAGTTTGAATTAGAGAAAGATTCGAATAATAGAA
GTTCAAATTAGTGAGAGTTCACAGTAAACTCATGAAAACTTTTTTTATTT
TCAAGACATCGTCTACAAATGATGGCACCATTAGAAAAACGACATTACAC
TTCCTTTCTCATCAAAGATATTATTGATAATGTTGAAGAAGATGGGGCAC
AGGTTGGCACTGATACTCAAAACGAAGGTAAATGCTTTTCTTCTAACTCT
ATATCCAAAGAGATTCCATGACTTTTTTGACCAAGATTCCAATCATGACA
ACCTGTCTTCTTCATAATTTTGTACATATAATTCATATCTTGCCAGAGTC
CAGAATGCTTGTACAAATTTGTGCTCTCCTTTATACTATCTCTAGCTTTC
TTCTTTTTGACACACAAAAAAGTTTCACTGTCTATCAAGAAAATTTGAGC
TTTGCTTTTTTTAAATATCGTCCAAGGTGAATCTTAACTCTCTAATTTTT
TTACGGGGTATAGAATTTGATGACGACGACGAATCGCTGACATCAGCACA
ATCCGAAGAATTCGATGAACATCAAACAAATAGCAGCAATAGTATGACCA
CAGATGAAAGTTCATCATACAACAATGAAGAGGATTCACCAACAGCTTCG
GTTAATTCAAACAACAATAACATGGATATCAAACGTAAATATCCAAGAGA
GAGAACAACATTCACCATTGCTCAACTCAAATTCTTAGAAGAACTATTCT
GTGTCAAAAAATATTTAACACTAATCGAACGCAGTAAAGTTGCACTGCAT
TTAGAGTTGAGCGAACGTCAAGTTAAAACTTGGTTTCAAAACCGACGCAC
TAAATACCGACGTCAAAAGACAGTAAATTCGCCCGTTTTATCATTATCGG
TTGAAAATAATCCGTTTNACTAGCGTTCTTCTTTTTGACACACAAAAAAG
TTTCACTGTCTATCAAGCAAATTTGAGCTTTGCTTTTTTTAAATATCGTC
CAAGGTGAATCTTAACTCTCTAATTTTTTTACGGGGTATAGAATTTGATG
ACGACGACGAATCGCTGACATCAACACAATCCGAAGAATTCGATGAACAT
CAAACAAATAGCAGCAATAGTATGACCACAGATGAAAGTTCATCATACAA
CAATGNAATCGCTGACATCAGCACAATCCGAAGAATTCGATGAACATCAA
ACAAATAGCAGCAATAGTATGACCACAGATGAAAGTTCATCATACAACAA
TGAAGAGGATTCACCAACAGCTTCGGTTAATTCAAACAACAATAACATGG
ATATCAAACGTAAATATCCAAGAGAGAGAACAACATTCACCATTGCTCAA
CTCAAATTCTTAGAAGAACTATTCTGTGTCAAAAAATATTTAACACTAAT
CGAACGCAGTAAAGTTGCACTGCATTTAGAGTTGAGCGAACGTCAAGTTA
AAACTTGGTTTCAAAACCGACGCACTAAATACCGACGTCAAAAAACAGTA
AATTCGCCCGTTTTATCATTATCGGTTGAAAATAATCCGTTTCTCAAATT
ATCGGATCACTCAGCCGCGTCACATTTTGTTGACATGGTTTTACACAGAG
AACCGGTTAGTCCAACAAATTTAATTGATCCATCAGCCGTATTTCCAGCT
CAGCAACAAAACTATAAGCCCTTAGCCATGAACACTTATCCAAACAGGCT
GACAAGTCCAACTTTTCATTATGAACAAGATTTAATGACAAATCTACAAT
CTGGAGTTAGAAATATGACTTCCAGGCTTACTACACCACCGTCGCCACCT
GTTTCGAGCTACGAGCACGGGCTAGCGAACAAGTATCGTAGAAGAGGATC
AGAGCCTGCTCGGTTGCCGTCAGTTTATGATGCAAATTTATCGTTGTGTT
TTTCAAGGAGTTGTGTTTCTTCATTATGTTACAATCACAAATACACTTCA
AATACACCAGTGAAAGAACCGTGAATACTTTTTTTTACTACTATAGTCAT
ATCATTATTATTTGAGTTTATAATTTTTCTGACCTTAAGGAGGGAAGTTA
AAATCTTCCATTTTGGCGCAAATACGAGTCTTAATTAATAGAGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025397-exon-sc0000533-1575043694:126980..127108 | TCONS_00025397-exon-sc0000533-1575043694:126980..127108 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1575043694:124732..124853 | TCONS_00025397-exon-sc0000533-1575043694:124732..124853 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1575043694:122863..123917 | TCONS_00025397-exon-sc0000533-1575043694:122863..123917 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1510915933:126980..127108 | TCONS_00025397-exon-sc0000533-1510915933:126980..127108 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1510915933:124732..124853 | TCONS_00025397-exon-sc0000533-1510915933:124732..124853 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1510915933:122863..123917 | TCONS_00025397-exon-sc0000533-1510915933:122863..123917 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1491911889:126980..127108 | TCONS_00025397-exon-sc0000533-1491911889:126980..127108 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1491911889:124732..124853 | TCONS_00025397-exon-sc0000533-1491911889:124732..124853 | Clytia hemisphaerica | exon |
| TCONS_00025397-exon-sc0000533-1491911889:122863..123917 | TCONS_00025397-exon-sc0000533-1491911889:122863..123917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000533 | supercontig | sc0000533:122863..127108 - |
Blast
The following BLAST results are available for this feature:
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