TCONS_00025393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025393
Unique NameTCONS_00025393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1151

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025393 ID=TCONS_00025393|Name=TCONS_00025393|organism=Clytia hemisphaerica|type=transcript|length=1151bp
GTATCAATCTACGACGAGGTGTTGAGCTAAATGGTCAATCTCAAGAATGC
AGTTGTATTGGAAATTTACTTTCTTGACTTTAAGTCTCCGCATCGTCATT
GTAGCATCTGAGAAGGATTATCGGGAAGAAATTCAGAGCAATTTAACACC
CAAGTCTCACACACTGATAGAAAAAGATACCACAGAATATCTATCTCAAT
CAGAAGCAGACGGAATCGCCAGAGGACCATGTTTTGGAGTCACCAAACTT
CGCAACCTGACAAATATAAAAGACATACGTTTTCGTAAACGATGTCGACG
ATTCTTAAAACGTTGTTTTTCGGTTAAAAAGTGGATTGATATTAAAAAGA
GGTTCAGAAACAAAAACTTGCAGCAGCAATGCAGGAAAATGTTGAGagga
aggaaagaaaaaaacaatgcaaaacctgtcaaaatatcaaaatcaaatgt
ATCTAGCACCTCGATGACAAAATTAACAGGTCGTACAGATTCCATTACAA
CCATACAAACCTCAAAGCCAGAATCGATATCGGTCACATCAACGGCAGCT
GTACCAACATCCACTCCTAAATCCATCGAGATGGCTTCAATCGAAGTGTC
CATAGCAACAATACCTCCACCAAGAGCCATAGCAACCGATCTTTTTGCTG
AAGGGCAGCGAACAGTAaatcaatgttattttttgGCACATGATGAGCAG
GGCACGTTATGTGTTACAGAAAACAATTGCATTACATACACCTATCCAAT
CTTTGAATTACACTGCGTGTAAATAAACACATGTATGTTAAACTGTTTAC
GGCGAGGGGTAAAATATATAATGCGAACGATTGTATAATAATAAAGATTG
TTACCAGGAGTATATTTCACTGGAGCGAAATCATAGATTGCCAAGATGGG
agatttataaaaaagtttcgacATTTCCTGAAATTTGAATGTCAAACTCA
AATTTAGATACTTcaataacaattttattttggaaagtAATTCAGCATTT
AACTTTATCAATAACTGTTTTTAGAAAAGGGCTGGGGTCAATTACCACCC
TTGAGAGTCCATGGCAACCGCCATCAATTCTAAATTGAATGTTATTTGAT
GAGTTTTCAAACTGAATTGTTTCTTTGGTAAACAGTTTcgatatttagaa
t
Run BLAST on NCBI

transcript from alignment at sc0000533:97105..100524-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025393 ID=TCONS_00025393|Name=TCONS_00025393|organism=Clytia hemisphaerica|type=transcript|length=3420bp|location=Sequence derived from alignment at sc0000533:97105..100524- (Clytia hemisphaerica)
GTATCAATCTACGACGAGGTGTTGAGCTAAATGGTCAATCTCAAGAATGC
AGTTGTATTGGAAATTTACTTTCTTGACTTTAAGTCTCCGCATCGTCATT
GTAGCATCTGAGAAGGATTATCGGGAAGAAATTCAGAGCAATTTAACACC
CAAGTCTCACACACTGATAGAAAAAGATACCACAGAATATCTATCTCAAT
CAGAAGCAGACGGAATCGCCAGAGGACCATGTTTTGGAGTCACCAAACTT
CGCAACCTGACAAATATAAAAGACATACGTTTTCGTAAACGATGTCGACG
ATTCTTAAAACGTTGTTTTTCGGTTAAAAAGTGGATTGATATTAAAAAGA
GGTTCAGAAACAAAAACTTGCAGCAGCAATGCAGGAAAATGTTGAGAGGA
AGGAAAGAAAAAAACAATGCAAAACCTGTCAAAATATCAAAATCAAATGT
ATCTAGCACCTCGATGACAAAATTAACAGGTCGTACAGATTCCATTACAA
CCATACAAACCTCAAAGCCAGAATCGATATCGGTCACATCAACGGCAGCT
GTACCAACATCCACTCCTAAATCCATCGAGATGGCTTCAATCGAAGTGTC
CATAGCAACAATACCTCCACCAAGAGCCATAGCAACCGATCTTTTTGCTG
AAGGGCAGCGAACAGTAAATCAATGTTATTTTTTGGCACATGATGAGCAG
GGCACGTTATGTGTTACAGAAAACAATTGCATTACATACTCCTATCCAAT
CTTTGAAATGCACTGCGTGTAGATAAACATATGTTAAACTGTATATGGTG
CGTGCTATAGGAGTAGGTGATTTATAGTAATATATAGAATGTTACAAGAA
TATATAATATCAATGGAATGGAAAAAAATATTGAAATTTAAGTATGGTGA
CCAAAGATTTCTTGAATTCCTCTAGGGTTGGGATTCTAGTAAAAAATAAG
ATCCTAGCTTGGCTAATATGTGAGAGTTCTACTGTAGTACGTCAAAATCT
GATAATTTCTAGGACATGCATAAAGTTAAAATTCGAAATCCCGGTATATG
GCATATGTTCCGATGTAGCCCACCGGTCATTTGCTAAAATAGTTCTCTCC
GAAATGAGAAATCTCTCAAATCTGTTTTTTTTATCATTACTGCTCCGACA
TGTTCAGTCCTGGGAAAAATTAGTTTTCTTAAATTCAAAATTCGAAATAT
TGGAAATAATCGGTGTAAATTAGGCATTGATTGACCGTCAAGTTGTCGAT
TCAAGATCGCGATCTCTCGAAAAATTATAATCTTTAAAATGATTCGCAAT
TTAAATAGAAAATTGAGATAATTATATTCTCTCAATTATTAAGTATTAAA
TATTGCTCCACAATTTATTGATTTTTTATTGTGTGAAAAGGGGAATATTT
CACGTGAGAAAATTTTAGTTGAGGTCATACTTTTCACATTGAATATTGCT
CTTCTTAATAGATAAATTAAAGTGAAAATCAGAACTTTCTTAGTTTTAAT
CAGTCAAAGGACATACTACGAGGAGCCGAACTGAAAGGTTGATCTCAAAA
ATGCAGTTCTATTGGAAATTTACTTTTTTAATCTTAATAATCGCCATTGT
AACGTCCGAGTCTAATCGTCCAATCGAAGTGTCCATGGCAACATTACCCC
CATCAAGAGCAAAAGCAATCGATCAAGCAATGACTGGAGACAAGCAACAA
CGAAAGATAGATGATTGTTATCTTTTGGCACATGATGAGCAGGGCACGTT
ATGTGTTATAGAAAACAATTGCATTACATACACCTATCCAATCTTTGAAT
TACACTGCGTGTAAATAAACATATGTTAAACTGTATATGGTGCGTGCTAT
AGGAGTAGGTGATTTATAGTAATATAGAATGTTACAAGAATATATAATAG
CAATGGAATGGAAAAAAAATATTGAAATTTAATTAAGTATGGTGACCAAA
GATTTCTTGAATTCCTCTAGGGTTGGGATTCTAGTAAAAAATAAGATCCT
AGCTTGGCTAATATGTGAGAGTTCTATTGTTGTACGTCAAAATCAGATAA
TTTCTAGGACATGCATAAAGTTAAAATTCGAAATCCCGGTATAAGGCATA
TGTTCCGATGTAGCCCACCGGTCATTTGCTAAAAATAATTCTCTCCGAAA
TATGAAATCTCTCAAATCTGTATTTTTTTATCATTACTGCTCCGACATGT
TCAGTCCTGGGAAAAATTAGTTTTCTTGAATTTAAAATTCGAAATATTGG
AAATAATCGGTGTAAATTAGGCATTGATTGACCGTCAAGTTGTCGATTCA
AGAATGCGGTCTCTCAAAAAATTATAATCTTTAAAATGATTCGCAATTTA
AATAGAAAATTGAGACAATTATATTCTCTCAATTATTAAGTATTAAATAC
ACCTTTTCGACCGTAGTCGCGCGGGCATTTTTTTGTCCGCTTTATCCCAC
TAGAACCGTCCCAGTCCTTTTTTCGCACCTATATACAATAGAAAAATGCG
TCAAAAAAGGACTGGGACGGTTTTAGTGGGATAAAGCGGACAAAAAATGC
CCGCGCGACTACGGTCGAAAAGGTGTATATTGCTCCACAATTTATTGATT
TTTTATTGTGTGAAAAGGGGAATATTTCACGTGAGAAAATTTTAGTTGAG
GTCATACTTTTCACATTGAATATTGCTCTTCTTAATAGATAAATTAAAAT
GAAAATCAGAACTTTCTTAGTTTTAATCAGTCAAAGGACATACTACGAGA
AGCCGAACTGAAAGGTTGATCTCAAAAATGCAGTTCTATTGGAAATTTAC
TTTTTTAATCTTAATAATCGCCATTGTAACGTCCGAGTCTAATCGTCCAA
TCGAAGTGTCCATGGCAACATTACCCCTATCAAGAGTAAAAGCAATCGAT
CAAGCAATGACTGGTAAAACGCAACAACGAAAGATAGATGATTGTTATCT
TTTGGAACATGATGAGCAGGGCACGTTATGTGTTACAGAAAACAATTGTA
TTACATACACCTATCCAATCTTTGAATTACACTGCGTGTAAATAAACACA
TGTATGTTAAACTGTTTACGGCGAGGGGTAAAATATATAATGCGAACGAT
TGTATAATAATAAAGATTGTTACCAGGAGTATATTTCACTGGAGCGAAAT
CATAGATTGCCAAGATGGGAGATTTATAAAAAAGTTTCGACATTTCCTGA
AATTTGAATGTCAAACTCAAATTTAGATACTTCAATAACAATTTTATTTT
GGAAAGTAATTCAGCATTTAACTTTATCAATAACTGTTTTTAGAAAAGGG
CTGGGGTCAATTACCACCCTTGAGAGTCCATGGCAACCGCCATCAATTCT
AAATTGAATGTTATTTGATGAGTTTTCAAACTGAATTGTTTCTTTGGTAA
ACAGTTTCGATATTTAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014262XLOC_014262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025393-exon-sc0000533-1575043694:99790..100524TCONS_00025393-exon-sc0000533-1575043694:99790..100524Clytia hemisphaericaexon
TCONS_00025393-exon-sc0000533-1575043694:97105..97520TCONS_00025393-exon-sc0000533-1575043694:97105..97520Clytia hemisphaericaexon
TCONS_00025393-exon-sc0000533-1510915933:99790..100524TCONS_00025393-exon-sc0000533-1510915933:99790..100524Clytia hemisphaericaexon
TCONS_00025393-exon-sc0000533-1510915933:97105..97520TCONS_00025393-exon-sc0000533-1510915933:97105..97520Clytia hemisphaericaexon
TCONS_00025393-exon-sc0000533-1491911889:99790..100524TCONS_00025393-exon-sc0000533-1491911889:99790..100524Clytia hemisphaericaexon
TCONS_00025393-exon-sc0000533-1491911889:97105..97520TCONS_00025393-exon-sc0000533-1491911889:97105..97520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:97105..100524 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	4.81216	6.67682	1.06219	0	0	1.08025	0.0417854	0	0	0	0	0	0.0471378	0	0.0728278	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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