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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025309 ID=TCONS_00025309|Name=TCONS_00025309|organism=Clytia hemisphaerica|type=transcript|length=1177bp
GCTGGCTGAAAATAGGTGTATTTTTGTTAATTAGttgataaaaatttaca
aatttgataCAAAAGTATTAACAACTCTATGAAAAGATATATGTATAACA
AACAGCAAAAACAGCGAAAATATAGGATCGTcgtttccaaaaaaatttgt
cagataGATTCAAATGAATACCCTCTTTGCTAATTTTGAAAGTACAttgt
ttttttcaacattccTCTTTCATTAGATATGGATGCTATGATGATAGGAA
GATGTTGTTtgaatcaaacaaaaaacaggCGAACCACTGCATCAGAACAC
ACCACGTTCAGGATACTGGTGTTTACTCAATTGATGTGTCACTGCACCCA
ACTCCATTAATTTACCAGCAAACTCAAATTTCTTCATCAGAATTGCATAA
TGGAGTGGAGGGTTACCACGTATGTCCAGTAAATTGATATCTGCTCCATA
GTCGACCATAGCCTCAATGCAGGAAGTGGAGCCACTCATGGCTGCAAAGT
GGATTGCAGCTATACCATCTTCATTGAATGCATTAATGTCTAAGTTTGGA
TAACTTTTAAAAACGTCATGTAATAAATTCAAGTCTTTATATTGAATAAT
ATCAAATAAAACTGCCGTTGCTGGTTGTGTATTACCTTCGTTTGTTattt
ttgatggttttgatTTCGCTTTAGTAGTTACTTTCGATGAGGATTTTTCA
GAAATCTTTGGACTATCCTTTAAAGAACCAGATTCCTCTTGACAAAGTGA
ACAGCTGGACGAACTTTTCTTGAGAAAACGTAACCGTTTTAAACTTAGTC
TTTGTTTTTGCTGACGATGCATTTTTGAACAAGTCAAGTCAGTttcactt
tttgtttttgttatttcaTTGTTATTCTGTTCATCTGTAGTAGTCGCAGT
CTTGGTCACATCAGTTTGGTTGTTCACTACAACTTGACAAatatctgttt
ttgtttttgtggtaGTTTCTGTTGTATCAATTTGATCGTCTTTTCGTTTA
TTCATTggagattttttaaataaaacagCACTCCAGGAAGATTGCGATTT
CTGTTTTGCCATATTGTGTGTGTTTTCCTccttgaaagaaaaaatgaaca
gtTATTATAGAAATTGACACTGTTACCAATATGGACTTCAACTAagcaaa
gcaaaatctttgtttAAACTCTCCTTG Run BLAST on NCBI transcript from alignment at sc0000531:217268..218862+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025309 ID=TCONS_00025309|Name=TCONS_00025309|organism=Clytia hemisphaerica|type=transcript|length=1595bp|location=Sequence derived from alignment at sc0000531:217268..218862+ (Clytia hemisphaerica)
GCTGGCTGAAAATAGGTGTATTTTTGTTAATTAGttgataaaaatttaca
aatttgataCAAAAGTATTAACAACTCTATGAAAAGATATATGTATAACA
AACAGCAAAAACAGCGAAAATATAGGATCGTcgtttccaaaaaaatttgt
cagataGATTCAAATGAATACCCTCTTTGCTAATTTTGAAAGTACAttgt
ttttttcaacattccTCTTTCATTAGATATGGATGCTATGATGATAGGAA
GATGTTGTTtgaatcaaacaaaaaacaggCGAACCACTGCATCAGAACAC
ACCACGGTAAGTGGTTTTGCAATGAAATACCATGTCCAGGGTAGATAAGG
TCTAACTGATTGGTAGAATGcaaaatgaataaatatttcatcGCAGTAAT
CAGATCTACAGTAAGAAACCTCGCTCTTGCATTAGTAGACAGTAGTATAA
ATATCTTTTGGAACACTTCTGTCTCAAaactaaattgaaaaatatttccc
cTGTCAAGGAATGATTCATGGCATTTCAAGTTTATCTCTATATATCAAAT
TTTCTTCTAAATAAATCCTCTTCAAAATTGTGGATGTTCAACCTAAggag
aaagaaatcaaatttgAGACTATTTTGATCATCTTCAAATGTGGAAAATA
ATATATGAATCCCCAAAGATATCCAAAATTATTCGTCATCAAAAATGCCA
AGTATCTCTCGATTTCTTTTTCAGTTCAGGATACTGGTGTTTACTCAATT
GATGTGTCACTGCACCCAACTCCATTAATTTACCAGCAAACTCAAATTTC
TTCATCAGAATTGCATAATGGAGTGGAGGGTTACCACGTATGTCCAGTAA
ATTGATATCTGCTCCATAGTCGACCATAGCCTCAATGCAGGAAGTGGAGC
CACTCATGGCTGCAAAGTGGATTGCAGCTATACCATCTTCATTGAATGCA
TTAATGTCTAAGTTTGGATAACTTTTAAAAACGTCATGTAATAAATTCAA
GTCTTTATATTGAATAATATCAAATAAAACTGCCGTTGCTGGTTGTGTAT
TACCTTCGTTTGTTatttttgatggttttgatTTCGCTTTAGTAGTTACT
TTCGATGAGGATTTTTCAGAAATCTTTGGACTATCCTTTAAAGAACCAGA
TTCCTCTTGACAAAGTGAACAGCTGGACGAACTTTTCTTGAGAAAACGTA
ACCGTTTTAAACTTAGTCTTTGTTTTTGCTGACGATGCATTTTTGAACAA
GTCAAGTCAGTttcactttttgtttttgttatttcaTTGTTATTCTGTTC
ATCTGTAGTAGTCGCAGTCTTGGTCACATCAGTTTGGTTGTTCACTACAA
CTTGACAAatatctgtttttgtttttgtggtaGTTTCTGTTGTATCAATT
TGATCGTCTTTTCGTTTATTCATTggagattttttaaataaaacagCACT
CCAGGAAGATTGCGATTTCTGTTTTGCCATATTGTGTGTGTTTTCCTcct
tgaaagaaaaaatgaacagtTATTATAGAAATTGACACTGTTACCAATAT
GGACTTCAACTAagcaaagcaaaatctttgtttAAACTCTCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025309-exon-sc0000531-1491911889:217268..217573 | TCONS_00025309-exon-sc0000531-1491911889:217268..217573 | Clytia hemisphaerica | exon |
| TCONS_00025309-exon-sc0000531-1510915933:217268..217573 | TCONS_00025309-exon-sc0000531-1510915933:217268..217573 | Clytia hemisphaerica | exon |
| TCONS_00025309-exon-sc0000531-1575043694:217268..217573 | TCONS_00025309-exon-sc0000531-1575043694:217268..217573 | Clytia hemisphaerica | exon |
| TCONS_00025309-exon-sc0000531-1491911889:217992..218862 | TCONS_00025309-exon-sc0000531-1491911889:217992..218862 | Clytia hemisphaerica | exon |
| TCONS_00025309-exon-sc0000531-1510915933:217992..218862 | TCONS_00025309-exon-sc0000531-1510915933:217992..218862 | Clytia hemisphaerica | exon |
| TCONS_00025309-exon-sc0000531-1575043694:217992..218862 | TCONS_00025309-exon-sc0000531-1575043694:217992..218862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000531 | supercontig | sc0000531:217268..218862 + |
Blast
The following BLAST results are available for this feature:
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