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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025296 ID=TCONS_00025296|Name=TCONS_00025296|organism=Clytia hemisphaerica|type=transcript|length=4924bpRun BLAST on NCBI protein sequence of TCONS_00025296-protein >TCONS_00025296-protein ID=TCONS_00025296-protein|Name=TCONS_00025296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1365bp MTMENNEDSSSGGGGKKSNDKNGGNKEDEKITQYSDGKDIYRINDTVYIERun BLAST on NCBI transcript from alignment at sc0000531:1544..15776+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025296 ID=TCONS_00025296|Name=TCONS_00025296|organism=Clytia hemisphaerica|type=transcript|length=14233bp|location=Sequence derived from alignment at sc0000531:1544..15776+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000531:1544..15776+ >TCONS_00025296 ID=TCONS_00025296|Name=TCONS_00025296|organism=Clytia hemisphaerica|type=CDS|length=73764bp|location=Sequence derived from alignment at sc0000531:1544..15776+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025296 vs. Swiss-Prot (Human)
Match: RERE (Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens GN=RERE PE=1 SV=2) HSP 1 Score: 329.331 bits (843), Expect = 1.123e-91 Identity = 198/505 (39.21%), Postives = 285/505 (56.44%), Query Frame = 3
Query: 465 KITQYSDGKDI-YRINDTVYIESQRPDLPYYICSIKDFK------------------------------------------RSKKDNITVDVVWFYRPCEIPATVYQLLLQDRNAENGSGEHNVLLDNPVVKERELFVSDFIDMFPASSLRGHARCNPFNDVKDYMMEYIADKDSWYYILRYNPDTRRMANAKGEIRIGASHQATLPTCIEYHKRSKEDLKELHQTCMEDIIWDPQGIANSKLVVYLRAAGSITSYSGYWQNTQESGPCIIDKNLNMVSQDLPIQYSYDMLHGHNYDLSTALQDLVCNPSPKKTMRSWSDDERKKFMKGLRSYGKTFHRIRKELLPDRTTNDLIQYYYFWKKS-----SIASSSRPHKRGGRRHNVLAXXXXXXXXXXXXXSEFLELXXXXXXXXXXXXXXXNVRDLSLYACRHCYTTKSPNWHHAGKSKTLLCYDCRLYFKRYGKMRPLREEEKRDPPPYIYKAAFENLEEQVPYTGRMRTRRS 1835
+IT Y D+ YR D VYIES+RP+ PY+ICSI+DFK SK+D++ ++V W+YR E+P +VYQ L+QDR+ EN SG V+ D PV+K RELF+SD++D + A++LRG + F+D+ E+ A DS++YIL YNP+TRR+ + +GEIR+G SHQA LP + + + T E+++W P G+ + L++YLRAA S+ +++G C+ S+D + + LH YD ALQ LV P PK + W++DE K+F+KGLR YGK F RIRKELLP++ T +LI +YY+WKK+ S A + RR T P +SEFL+LSS SE++FD D ++L YACRHC+TT S +WHH G+ LLC DCR++FK+YG++ P+ E+ DPPP+++K E ++ + MRTRRS
Sbjct: 93 EITSYITEDDVVYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPTPALCDPPACSLPVASQPPQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGRELVITD-PVIKNRELFISDYVDTYHAAALRGKCNISHFSDIF-AAREFKARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTV-----TQHEELVWMP-GVNDCDLLMYLRAARSMAAFAGMCDGGSTEDGCVA------ASRDDTTLNALNTLHESGYDAGKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDFDSEDSE---QELKGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPI--EKPVDPPPFMFKPVKEE-DDGLSGKHSMRTRRS 577 The following BLAST results are available for this feature:
BLAST of TCONS_00025296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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