TCONS_00025293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025293
Unique NameTCONS_00025293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025293 ID=TCONS_00025293|Name=TCONS_00025293|organism=Clytia hemisphaerica|type=transcript|length=1630bp
ttttcaggaaATAACGAAAAAGTACAAACATATAAAATAAGAGAACTTGT
GATCAATGATGGCGACCACCCCGACAACATCGGGAAATAATAACATCCAA
ATGCAACGCCGTATGTTATACGTCGCTGTCGGATGTATATGTCGTGATAT
TGGTTTCCAAGGGGCTTCAAAAGCTTGTCTGGAAACGTTAACTGAAATGC
TACAAGCCCACATAACGGAATTGACTCGATCGTGTCGCAAATATTGCGAA
CACGGGCACCGGACGTCCCCAGACCTTACCGATGTCAAAATGGCTCTTGC
GGAATTCGGATTAAGTGCCCATGGGTTGAATTTATATTCGCAACGTGTTA
AAAGTCAAGTTTTACGGAAACCGAATCCATCCAAGCTACCGGCTGAGCAC
AAGACACTCAAATCAAGTCTCCCCGATGTAAATCAGCCGAATTATATACC
TAATTATttgcctggatatccagacatGCAGTCGTTCGTGAGGACCCCGA
CTTTACGTGAACCGGTACAGAAATATGACGTCGTGCGCGAACGTATAGCT
ACACAGCGTAAGTCAACAGAGAACtctttagtgaaatttctttcaaaaac
aaaaccttcagaCGTGCTCATTTTTGAAGATATTGATACGGACAAATTTC
CATGTGTTGAGATTGAGTTTGAAAAGAAAGCCAATTATTTAAGAGCATTG
AATTATAAAGTGGAAGTTGCAAACGCCGTCGACGATCTTTTAGATGAGAA
ATCTGACGAAGAAGATACGGCGACCGAAAACGAAGGATTTTCGTCACCGA
ACAAAACCGAggacgaaaacgaaagtaaaccGACTCTTTTGTCGGCCAAT
TCAACAGCTGATGCTGTGAATTCAAGTGAAGATAATAACCCATACGCTAA
ACCGCCGAAACGAGTTCGTTATAAACGTTAAAAATGAGTCTTTTTGAAGG
CTTACATCATATAGATGATGTCATAGGGTCTCTCGTTTCAGGTGTCGGCA
TGAAATGTGAAAGTGATATCACCTTACGTTTGCCATGGAAATCAATTGGA
TACATGCGTGAAATGAACGACAGTTCTTTTGAGCAATTTTGCTTCGTCAT
TCAATTTACTTATGAAAATCTGGAAGATCGCTGGTTTTTGAACCATGTAG
TTGTACTAAATCAAATTCTTACATGAATATTGCTAGCTGAAATAACCGAG
CTCTGTTCCAGTGGCTGAACTTATGTTAGACAGCTATTTCGATAATGATT
CAATTTTGTAAATGTCTTACAATTGAAGTACGAGCTTTGATACACGTATT
GGAAATAAACTCGTGAATTTCTTTAAGAGGTGAGATCGGTTCCACGATTT
CATAAACTGACTTCTTTTCATGAAACAAGCGCAGACAATATGGGATACAG
TAACCCGTAAAATGAAAGTCCTCATTGTTTGTAACTATTTCAATAGTTTT
GTATTGATTTAAAtgatttaattattttcttatctAATTGGTTACAAAAA
TGAGTGCTTCTGGTTAATGGTCTGGTTTTCCTTATTAACCTTACTCTCCA
ACAGTGAAGATCAAacgtgaagaagaaaaaaatcaaaagatcaaAGATTC
GctcgtgtgaaaatgataattatagcgCTG
Run BLAST on NCBI

protein sequence of TCONS_00025293-protein

>TCONS_00025293-protein ID=TCONS_00025293-protein|Name=TCONS_00025293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MMATTPTTSGNNNIQMQRRMLYVAVGCICRDIGFQGASKACLETLTEMLQ
AHITELTRSCRKYCEHGHRTSPDLTDVKMALAEFGLSAHGLNLYSQRVKS
QVLRKPNPSKLPAEHKTLKSSLPDVNQPNYIPNYLPGYPDMQSFVRTPTL
REPVQKYDVVRERIATQRKSTENSLVKFLSKTKPSDVLIFEDIDTDKFPC
VEIEFEKKANYLRALNYKVEVANAVDDLLDEKSDEEDTATENEGFSSPNK
TEDENESKPTLLSANSTADAVNSSEDNNPYAKPPKRVRYKR
Run BLAST on NCBI

transcript from alignment at sc0000529:216527..218156

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025293 ID=TCONS_00025293|Name=TCONS_00025293|organism=Clytia hemisphaerica|type=transcript|length=1630bp|location=Sequence derived from alignment at sc0000529:216527..218156 (Clytia hemisphaerica)
CAGcgctataattatcattttcacacgagCGAATCTttgatcttttgatt
tttttcttcttcacgtTTGATCTTCACTGTTGGAGAGTAAGGTTAATAAG
GAAAACCAGACCATTAACCAGAAGCACTCATTTTTGTAACCAATTagata
agaaaataattaaatcaTTTAAATCAATACAAAACTATTGAAATAGTTAC
AAACAATGAGGACTTTCATTTTACGGGTTACTGTATCCCATATTGTCTGC
GCTTGTTTCATGAAAAGAAGTCAGTTTATGAAATCGTGGAACCGATCTCA
CCTCTTAAAGAAATTCACGAGTTTATTTCCAATACGTGTATCAAAGCTCG
TACTTCAATTGTAAGACATTTACAAAATTGAATCATTATCGAAATAGCTG
TCTAACATAAGTTCAGCCACTGGAACAGAGCTCGGTTATTTCAGCTAGCA
ATATTCATGTAAGAATTTGATTTAGTACAACTACATGGTTCAAAAACCAG
CGATCTTCCAGATTTTCATAAGTAAATTGAATGACGAAGCAAAATTGCTC
AAAAGAACTGTCGTTCATTTCACGCATGTATCCAATTGATTTCCATGGCA
AACGTAAGGTGATATCACTTTCACATTTCATGCCGACACCTGAAACGAGA
GACCCTATGACATCATCTATATGATGTAAGCCTTCAAAAAGACTCATTTT
TAACGTTTATAACGAACTCGTTTCGGCGGTTTAGCGTATGGGTTATTATC
TTCACTTGAATTCACAGCATCAGCTGTTGAATTGGCCGACAAAAGAGTCg
gtttactttcgttttcgtccTCGGTTTTGTTCGGTGACGAAAATCCTTCG
TTTTCGGTCGCCGTATCTTCTTCGTCAGATTTCTCATCTAAAAGATCGTC
GACGGCGTTTGCAACTTCCACTTTATAATTCAATGCTCTTAAATAATTGG
CTTTCTTTTCAAACTCAATCTCAACACATGGAAATTTGTCCGTATCAATA
TCTTCAAAAATGAGCACGtctgaaggttttgtttttgaaagaaatttcac
taaagaGTTCTCTGTTGACTTACGCTGTGTAGCTATACGTTCGCGCACGA
CGTCATATTTCTGTACCGGTTCACGTAAAGTCGGGGTCCTCACGAACGAC
TGCatgtctggatatccaggcaaATAATTAGGTATATAATTCGGCTGATT
TACATCGGGGAGACTTGATTTGAGTGTCTTGTGCTCAGCCGGTAGCTTGG
ATGGATTCGGTTTCCGTAAAACTTGACTTTTAACACGTTGCGAATATAAA
TTCAACCCATGGGCACTTAATCCGAATTCCGCAAGAGCCATTTTGACATC
GGTAAGGTCTGGGGACGTCCGGTGCCCGTGTTCGCAATATTTGCGACACG
ATCGAGTCAATTCCGTTATGTGGGCTTGTAGCATTTCAGTTAACGTTTCC
AGACAAGCTTTTGAAGCCCCTTGGAAACCAATATCACGACATATACATCC
GACAGCGACGTATAACATACGGCGTTGCATTTGGATGTTATTATTTCCCG
ATGTTGTCGGGGTGGTCGCCATCATTGATCACAAGTTCTCTTATTTTATA
TGTTTGTACTTTTTCGTTATttcctgaaaa

Coding sequence (CDS) from alignment at sc0000529:216527..218156

>TCONS_00025293 ID=TCONS_00025293|Name=TCONS_00025293|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0000529:216527..218156 (Clytia hemisphaerica)
TTAACGTTTATAACGAACTCGTTTCGGCGGTTTAGCGTATGGGTTATTAT
CTTCACTTGAATTCACAGCATCAGCTGTTGAATTGGCCGACAAAAGAGTC
ggtttactttcgttttcgtccTCGGTTTTGTTCGGTGACGAAAATCCTTC
GTTTTCGGTCGCCGTATCTTCTTCGTCAGATTTCTCATCTAAAAGATCGT
CGACGGCGTTTGCAACTTCCACTTTATAATTCAATGCTCTTAAATAATTG
GCTTTCTTTTCAAACTCAATCTCAACACATGGAAATTTGTCCGTATCAAT
ATCTTCAAAAATGAGCACGtctgaaggttttgtttttgaaagaaatttca
ctaaagaGTTCTCTGTTGACTTACGCTGTGTAGCTATACGTTCGCGCACG
ACGTCATATTTCTGTACCGGTTCACGTAAAGTCGGGGTCCTCACGAACGA
CTGCatgtctggatatccaggcaaATAATTAGGTATATAATTCGGCTGAT
TTACATCGGGGAGACTTGATTTGAGTGTCTTGTGCTCAGCCGGTAGCTTG
GATGGATTCGGTTTCCGTAAAACTTGACTTTTAACACGTTGCGAATATAA
ATTCAACCCATGGGCACTTAATCCGAATTCCGCAAGAGCCATTTTGACAT
CGGTAAGGTCTGGGGACGTCCGGTGCCCGTGTTCGCAATATTTGCGACAC
GATCGAGTCAATTCCGTTATGTGGGCTTGTAGCATTTCAGTTAACGTTTC
CAGACAAGCTTTTGAAGCCCCTTGGAAACCAATATCACGACATATACATC
CGACAGCGACGTATAACATACGGCGTTGCATTTGGATGTTATTATTTCCC
GATGTTGTCGGGGTGGTCGCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014202XLOC_014202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025293-proteinTCONS_00025293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025293-exon-sc0000529-1491911889:216527..218156TCONS_00025293-exon-sc0000529-1491911889:216527..218156Clytia hemisphaericaexon
TCONS_00025293-exon-sc0000529-1510915933:216527..218156TCONS_00025293-exon-sc0000529-1510915933:216527..218156Clytia hemisphaericaexon
TCONS_00025293-exon-sc0000529-1575043694:216527..218156TCONS_00025293-exon-sc0000529-1575043694:216527..218156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:216527..218156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.0693	21.9849	8.00002	5.36535	13.0299	9.7643	10.2074	10.6679	7.82651	7.87018	6.45014	4.28995	3.88548	4.88006	5.38724	6.6181	8.4341	7.58811	3.58293	3.19383	5.57617	4.62729	29.571	24.8544	7.29115	9.5933	2.90992	3.3613	14.3544	16.6294
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006565BTP
IPR019473TFIID_su8_C
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046982 protein heterodimerization activity
Blast
[Close]
BLAST of TCONS_00025293 vs. Swiss-Prot (Human)
Match: TAF8 (Transcription initiation factor TFIID subunit 8 OS=Homo sapiens GN=TAF8 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.070e-40
Identity = 74/195 (37.95%), Postives = 116/195 (59.49%), Query Frame = 2 
Query:   74 TTSGNNNIQMQRRMLYVAVGCICRDIGFQGASKACLETLTEMLQAHITELTRSCRKYCEHGHRTSPDLTDVKMALAEFGLSAHGLNLYSQRVKSQVLRKPNPSKLPAEHKTLKSSLPDVNQPNYIPNYLPGYPDMQSFVRTPTLREPVQKYDVVRERIATQRKSTENSLVKFLSKTKPSDVLIFEDIDTDKFPCV 658
            T   +N    +RR L V V  +  + GF+ A KA +ETLTEMLQ++I+E+ RS + YCEH  RT P L+D+ + L E G +   L  Y++R +  V+  P  +  P   K L +   +   P +IP++ P +PD  ++++TPT REPV  Y V+RE+ A+QR+  E +L +F++KT  +  L  +D+ T  FP +
Sbjct:   23 TNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQ-NRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVST--FPLI 214
The following BLAST results are available for this feature:
BLAST of TCONS_00025293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF81.070e-4037.95Transcription initiation factor TFIID subunit 8 OS... [more]
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