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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025283 ID=TCONS_00025283|Name=TCONS_00025283|organism=Clytia hemisphaerica|type=transcript|length=3613bpRun BLAST on NCBI transcript from alignment at sc0000529:164477..177421- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025283 ID=TCONS_00025283|Name=TCONS_00025283|organism=Clytia hemisphaerica|type=transcript|length=12945bp|location=Sequence derived from alignment at sc0000529:164477..177421- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025283 vs. Swiss-Prot (Human)
Match: SE1L1 (Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3) HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0 Identity = 325/586 (55.46%), Postives = 435/586 (74.23%), Query Frame = 3
Query: 1089 EQKPTKDTTDKELEALYREAKNL-----PKTEQKKRNRLLLSVAEKGHLDSMADIGYPLLFGDEIKANISKAFQMFQKLAEEGLPKXXXXXXXXXXXXXXXNSSQAKSIIYTTFAALGGDTMAEMMLGYRHYSGIGVQKSCETALTYYXXXXXXXXXXXXLHSGGNAVQRIRLYDELEQPGGNAGHIDEDLLQYYQFLADKGDTQAQXXXXXXXXXXXXXXDINYERAFHYFKKAADNENGNGLAYIGKMYMQGLHVQKDSDQ-AFHYFKKSLESKNPIGQAGLGMLYLKGEGVKKDYDEALKYFSQSAEQGWVEGQLQLGNMYYNGIGVKKDYRQAVKYFTFASQSGHVLAFYNLAMMHTIGAGVMRSCNAATELFKNVAERGNWSMMFMDAHDAYKDGDLKTALIKYYFLAELGYEVAQSNVAYILDKDETNFFDKNETYSRALLQWSRAAEQGYAIARVKVGDYYFYGLGTKVNYEMAALQYRLASDKQANAQAMFNLGFMHEQGFGLKKDIHLAKRFYDMAAEASVDAQFPVYLALAKLALEFSYEWLMK-NYR-FWEQIDTEKMQLYVVQKVGPDWDIYVI 2822
E++ K +E E +Y+ + K+++++ R L A H ++ + Y LLFGD + NI A +MF+KL EEG PKGQ LGFL+ +GL NSSQAK+++Y TF ALGG+ +A M+LGYR+++GIGV +SCE+ALT+Y+ VA V+ SL +GG+ VQRIRL DE+E PG N+G ++EDL+QYYQFLA+KGD QAQ+GLGQL GGRG++ N++RAF YF AA+ N + +A++GKMY +G + S++ A HYFKK+ + NP+GQ+GLGM YL G GV+ +YD ALKYF ++AEQGWV+GQLQLG+MYYNGIGVK+DY+QA+KYF ASQ GH+LAFYNLA MH G GVMRSC+ A ELFKNV ERG WS M A+++YKDGD A+I+Y LAE GYEVAQSN A+ILD+ E + +NETY RALL W+RAA QGY +AR+K+GDY+FYG GT V+YE A + YRLAS++Q +AQAMFNLG+MHE+G G+K+DIHLAKRFYDMAAEAS DAQ PV+LAL KL + + +++ + N R + Q+D +++ +GP+WD+Y++
Sbjct: 171 EEEAAKRRQMQEAEMMYQTGMKILNGSNKKSQKREAYRYLQKAASMNHTKALERVSYALLFGDYLPQNIQAAREMFEKLTEEGSPKGQTALGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSCESALTHYRLVANHVASDISL-TGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDGDYNAAVIQYLLLAEQGYEVAQSNAAFILDQREASIVGENETYPRALLHWNRAASQGYTVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAEASPDAQVPVFLALCKLGVVYFLQYIRETNIRDMFTQLDMDQL-------LGPEWDLYLM 748 The following BLAST results are available for this feature:
BLAST of TCONS_00025283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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