|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025266 ID=TCONS_00025266|Name=TCONS_00025266|organism=Clytia hemisphaerica|type=transcript|length=1490bp
ttttttgatgagatagatgttttttttgctcacaaagtcttgaatatgaa
agaatatttcaagagcatgaaattttggtttctaaacgttttttttataa
gaaacaaacgacaaattttgatagatcgtaactatttgtgttctgaatga
ttgtttaatggtcacgctcacgtagatatcaattatatatgtgttaaatg
cataaccaggtaggtccataaaagtatcacttgttttttctCACTCAGAA
TCCGCGACCAACGCATCAAAGGATTCCTCAGATACTGGCACCATCATCGC
TGTCATCTCCACAACCATTTTCATATCGCTCGCTTTCACCATGTTTTTAT
TCTGGTTGATATGGCGACGGAAACGTCTCCAACGTCGCAAGAGTCAGGTG
TCCAATATAGTTACTATGACAACAGATGACGACCCGGACACATTATCGAG
ACCGTCGACGTTCAGTAGTACTCGTTCTGTATCACCGCTTATTAATTATT
TATATGAAAAAGACTCTTTACCTTCACCGAGAGACCCTCCGGATCTCGAA
GTATTTTCCGTTCTCGATAAGCCAGCCGTTTTTACGGAAGAGCAGCAAGA
GGAAAGAGATGAAAAGAAGTACACTACTCTGAAGGAAATTGATCGAATAT
GTATGGAAGCTTTGAAAGGTCCTTCTTCTGccaataataaaaaaactgaa
aaacccTACAACAGAGCAAATATAAATGTAAAAAATTACAGTAATGAACA
ATTACCGTGTTGCGATAAAACACTGTCGAATATTTCACGAGATAATTCGT
CATACACTTGTAGTAGTAGTGGTTATGAGAGTGGTTCGAGCACCCCTTTG
TCCTCACAGTCCGGTTCAGCAACCTCCACTCGACTACCACCTTCAAGACT
CGAAAAGAGAATACAAGGAGGTCGTCACAGTGCATCGTCCTCCTCGACAC
CATCTCGTGGTCGGCGTCGATCGTCAGAAAGGAACAACAACTCTTCATCA
CACACTCTTTCTTCACAATCCTCTTCTCATAATGAATGCTTCGAAGAAGA
GGACGGAGAATTGATTCACAGCCTACAGACCAAACATCACGTCCAATTTG
AAGGGCTGCCCAATTTCATCATGTACAGAGAGGATACAAATGTTTGAGTG
TGAAATGCACAGCGTTATCAATAGTTTAGATGGTGATCCAATGCTTGAGA
GCTTGATATTTCAGAAAACGACTTTCTTGGTGGAACTCACTAGGAAATGA
GCGGACAGATTGGTGCACCATAATACGATTTCTGAGCATTGACAATATGT
GTataatattttgtataaaatgCAGGCCTGTAATTTATGTAGTTTAATAT
TTCTAAAGATTTTCCTTcgcttgtttttgtttttgtttaaaatttattgC
TATTTATTTTATGATACTAGACCAATAGTATCCATTTATGACTTGCTATC
AAAAAGCAAATCAATCCTTTTATTTTATGTAACTCTGAAG Run BLAST on NCBI transcript from alignment at sc0000529:77742..79682- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025266 ID=TCONS_00025266|Name=TCONS_00025266|organism=Clytia hemisphaerica|type=transcript|length=1941bp|location=Sequence derived from alignment at sc0000529:77742..79682- (Clytia hemisphaerica)
TTTTTTGATGAGATAGATGTTTTTTTTGCTCACAAAGTCTTGAATATGAA
AGAATATTTCAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTTTATAA
GAAACAAACGACAAATTTTGATAGATCGTAACTATTTGTGTTCTGAATGA
TTGTTTAATGGTCACGCTCACGTAGATATCAATTATATATGTGTTAAATG
CATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTTTTCTCACTCAGAA
TCCGCGACCAACGCATCAAAGGATTCCTCAGATACTGGCACCATCATCGC
TGTCATCTCCACAACCATTTTCATATCGCTCGCTTTCACCATGTTTTTAT
TCTGGTTGATATGGCGACGGAAACGTCTCCAACGTCGCAAGAGTCAGGTG
TCCAATATAGTTACTATGACAACAGATGACGACCCGGACACATTATCGAG
ACCGTCGACGTTCAGTAGTACTCGTTCTGTATCACCGCTTATTAATTATT
TATATGAAAAAGACTCTTTACCTTCACCGAGAGACCCTCCGGATCTCGAA
GTATTTTCCGTTCTCGATAAGCCAGCCGTTTTTACGGAAGAGCAGCAAGA
GGAAAGAGATGAAAAGAAGTACACTACTCTGAAGGAAATTGATCGAATAT
GTATGGAAGCTTTGAAAGGTCCTTCTTCTGCCAATAATAAAAAAACTGAA
AAACCCTACAACAGAGCAAATATAAATGTAAAAAATTACAGTAATGAACA
ATTACCGTGTTGCGATAAAACACTGTCGAATATTTCACGAGATAATTCGT
CATACACTTGTAGTAGTAGTGGTTATGAGAGTGGTTCGAGCACCCCTTTG
TCCTCACAGTCCGGTTCAGCAACCTCCACTCGACTACCACCTTCAAGACT
CGAAAAGAGGTGAGAGTTAGTTAGTTAAATCTTGGGTCAAGCTGGAGTTT
TTACAAGGTTTTCGATGATTCGGTTGATGGTTGAATCTTGAGACAAAGGA
TTTTATTGCTTTTTCTAAAGAACGCGTCATCTCTATTATTTCAAATGACC
AATTAGTTAAGTATCTTATAACAACTCCAGCTCATCCCTAAATCTTAATT
ACCTCTTAACGTAATAAACTTGTAATAACGGCTAACAATGCACAAGTATT
TCTTTGACATTGTGCCCAACTTGAATATGTTGCTACAAAACAACAGAAAA
ACTGCTGTCCCAACTCATTTCTCGCTGCGGAGTCCCCCCTTCCTCACTTC
CCCATGTTGGAGGAAGGAATCTTGCAACGTCCACTCTGACCCCACATCAA
CACTGTGTTCCCAGACCAACAATTGTATAAATAAATTGGATTTTTTCTTT
TTATATTTAGAATACAAGGAGGTCGTCACAGTGCATCGTCCTCCTCGACA
CCATCTCGTGGTCGGCGTCGATCGTCAGAAAGGAACAACAACTCTTCATC
ACACACTCTTTCTTCACAATCCTCTTCTCATAATGAATGCTTCGAAGAAG
AGGACGGAGAATTGATTCACAGCCTACAGACCAAACATCACGTCCAATTT
GAAGGGCTGCCCAATTTCATCATGTACAGAGAGGATACAAATGTTTGAGT
GTGAAATGCACAGCGTTATCAATAGTTTAGATGGTGATCCAATGCTTGAG
AGCTTGATATTTCAGAAAACGACTTTCTTGGTGGAACTCACTAGGAAATG
AGCGGACAGATTGGTGCACCATAATACGATTTCTGAGCATTGACAATATG
TGTATAATATTTTGTATAAAATGCAGGCCTGTAATTTATGTAGTTTAATA
TTTCTAAAGATTTTCCTTCGCTTGTTTTTGTTTTTGTTTAAAATTTATTG
CTATTTATTTTATGATACTAGACCAATAGTATCCATTTATGACTTGCTAT
CAAAAAGCAAATCAATCCTTTTATTTTATGTAACTCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025266-exon-sc0000529-1575043694:78774..79682 | TCONS_00025266-exon-sc0000529-1575043694:78774..79682 | Clytia hemisphaerica | exon |
| TCONS_00025266-exon-sc0000529-1575043694:77742..78322 | TCONS_00025266-exon-sc0000529-1575043694:77742..78322 | Clytia hemisphaerica | exon |
| TCONS_00025266-exon-sc0000529-1510915933:78774..79682 | TCONS_00025266-exon-sc0000529-1510915933:78774..79682 | Clytia hemisphaerica | exon |
| TCONS_00025266-exon-sc0000529-1510915933:77742..78322 | TCONS_00025266-exon-sc0000529-1510915933:77742..78322 | Clytia hemisphaerica | exon |
| TCONS_00025266-exon-sc0000529-1491911889:78774..79682 | TCONS_00025266-exon-sc0000529-1491911889:78774..79682 | Clytia hemisphaerica | exon |
| TCONS_00025266-exon-sc0000529-1491911889:77742..78322 | TCONS_00025266-exon-sc0000529-1491911889:77742..78322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000529 | supercontig | sc0000529:77742..79682 - |
Blast
The following BLAST results are available for this feature:
|
