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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025061 ID=TCONS_00025061|Name=TCONS_00025061|organism=Clytia hemisphaerica|type=transcript|length=1845bp
ATCatccaaaaaataaattttcattgaaCTGTCTGATGAAACAATTTCAT
GTCCTCCGGGCAGTAGGATTTAGAGAAGTCTTTCAAAAAGACAATGGACG
GAGTGACAGTGGTAGTCATTCTATCGATCACGGCAGTTCTCGTCTTCATC
CTCAACGTTTTCTGTGTTTCCATCATCGTCCGCAATCAACAACTACGTTC
AAAACCCTCCTCAATCCTCACCGCTAACCTGCTTTCGATGCATATCCTTC
AAGCGGTCGCTACAATGCCATTCTACGCGCTCAAACGATTACCTGAAACT
AACTCGAATTTTGTTTGCAGTGGATTTCGTTTTTTCTACATTCTCACCTT
TTACATAGCATGTTTCTGCGTTCTTCTCATCTCTCTAGACCGCTTCTTAG
CGTTCCGTTTGAAGATGAAATATCGTACAACGGTTACAAGTAAACGTATC
ACGTACGCCCTTGCGTTAGTATGGGTCTACATCATTACTATGTGTTGTAT
ACCGTTCGCCTTCCGTACGGAGAAGTGTTCATACAACCCTCCCCCACAGT
GGGTCGCCTTCATGCTTCTGGTGAACTGTTTCCTACCCTGTCTCGTTATA
GTCGGAATCTACACCTACATCATGGTGTGTTTAAGACGATTCGAGaaact
gaaaaacatgaaaacatcACAATCTGGAGGAATggtttcaatctcaaaat
cgaACAAACGAATCACTCGAAACACAATGATTCTCGTAGCAACGTACGGT
ATCGCTTGGTTACCGTCAATCATTTTCTACCTCATACAATCACTATTTCC
AGAAGTCTTCAGTGATTCTTATTACGACTCAGCAGAGGACCAATACATAA
GTTTCTTCCTCAAATATATCAAATTTGTTGAAGGAATCACTTCACCCGTT
CTCTACTGTTATTTGAACACTTTCTTCCGTAAAACGGTAATGGACCTGTT
CTGCATGGACACTTCCGCTATTCGACCTGAACAATCCGAATTTCAAACAC
AAGCGGTCATCGTGATTAACGGAAACACTTCTTCCGAATGAAATGTGGAC
AGTTCAAATACCGTGTTATACACAGTGGGCAACCGTGGAAACAATTCCTT
AGCTGCCTCAGAGCTTTTGAATTAATCGGAGCAAATCACTTTAAATTTAT
GTTATTAGTTATTGCAGGGGCTCTTTCACAACGCTGTCAAAAGAGCATAA
AGTTTATGTGAAATGGTGTAATCCTTGGTAAAAGGAGCTATGAACATCAA
TAATATATTACTATGAAGATCAATAATATGGACGTGCGTAGTACCATGCA
ATAacagcgagattatgtatctggaattctctacagCTACGGCTAAAgcg
gcgagggaaatggcgagtaaggcaagtaatggcgggtgaaagcaagttcg
atatttgacgtacggcattattcgactttgcttatacggtgtttttCCCG
ttcagagcaaagtagacaacgacatgtcgcctttggtgacgacccgcatg
ggcagccacgcaaccgtagccgtagaatatctccgatacataatctcgct
aacaatagctgattggttgtaagtgacgtaaaatcagtcaatacgtcact
tttaaccaacCAGCTGTGTTGGGTCCGtgaaagacattgcaatggttcat
atcatgaattcaaAAGAACATGCATGAGCCAAAACTTCCCCGATTTCCTA
CTATGATTTTATGGAGGGAATaaaaattcgaaaagaaaaatattatgttT
TAATAATTTAATTGTATAGTCTCATTTATCCTGATTTTATCATCAATATT
ACATGATGATTATCTTAAAATTGTAATATAAAAGCTGTCATTGAA Run BLAST on NCBI transcript from alignment at sc0000520:199731..201818+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025061 ID=TCONS_00025061|Name=TCONS_00025061|organism=Clytia hemisphaerica|type=transcript|length=2088bp|location=Sequence derived from alignment at sc0000520:199731..201818+ (Clytia hemisphaerica)
ATCatccaaaaaataaattttcattgaaCTGTCTGATGAAACAATTTCAT
GTCCTCCGGGCAGTAGGATTTAGAGAAGTCTTTCAAAAAGGTAGGCgaca
taaataaaaaacaacctaTCGACATTATTAATGCAGACAATCTAGTTCGT
tgaaaaaacctaaaaatatgaTTCGCGAAGAGTTATTCTACGAAAACCAA
AAAGTCGAGATATGTGTAGTTATGGTTCTTTTGTTTCGAATGTCTCGATG
TAATAATAAACCATGATCTTGATCTCATAATACATTCAGTAAACTACTGA
ATGTTTCATTATATTTATCTTTTATCATTTCAGACAATGGACGGAGTGAC
AGTGGTAGTCATTCTATCGATCACGGCAGTTCTCGTCTTCATCCTCAACG
TTTTCTGTGTTTCCATCATCGTCCGCAATCAACAACTACGTTCAAAACCC
TCCTCAATCCTCACCGCTAACCTGCTTTCGATGCATATCCTTCAAGCGGT
CGCTACAATGCCATTCTACGCGCTCAAACGATTACCTGAAACTAACTCGA
ATTTTGTTTGCAGTGGATTTCGTTTTTTCTACATTCTCACCTTTTACATA
GCATGTTTCTGCGTTCTTCTCATCTCTCTAGACCGCTTCTTAGCGTTCCG
TTTGAAGATGAAATATCGTACAACGGTTACAAGTAAACGTATCACGTACG
CCCTTGCGTTAGTATGGGTCTACATCATTACTATGTGTTGTATACCGTTC
GCCTTCCGTACGGAGAAGTGTTCATACAACCCTCCCCCACAGTGGGTCGC
CTTCATGCTTCTGGTGAACTGTTTCCTACCCTGTCTCGTTATAGTCGGAA
TCTACACCTACATCATGGTGTGTTTAAGACGATTCGAGaaactgaaaaac
atgaaaacatcACAATCTGGAGGAATggtttcaatctcaaaatcgaACAA
ACGAATCACTCGAAACACAATGATTCTCGTAGCAACGTACGGTATCGCTT
GGTTACCGTCAATCATTTTCTACCTCATACAATCACTATTTCCAGAAGTC
TTCAGTGATTCTTATTACGACTCAGCAGAGGACCAATACATAAGTTTCTT
CCTCAAATATATCAAATTTGTTGAAGGAATCACTTCACCCGTTCTCTACT
GTTATTTGAACACTTTCTTCCGTAAAACGGTAATGGACCTGTTCTGCATG
GACACTTCCGCTATTCGACCTGAACAATCCGAATTTCAAACACAAGCGGT
CATCGTGATTAACGGAAACACTTCTTCCGAATGAAATGTGGACAGTTCAA
ATACCGTGTTATACACAGTGGGCAACCGTGGAAACAATTCCTTAGCTGCC
TCAGAGCTTTTGAATTAATCGGAGCAAATCACTTTAAATTTATGTTATTA
GTTATTGCAGGGGCTCTTTCACAACGCTGTCAAAAGAGCATAAAGTTTAT
GTGAAATGGTGTAATCCTTGGTAAAAGGAGCTATGAACATCAATAATATA
TTACTATGAAGATCAATAATATGGACGTGCGTAGTACCATGCAATAacag
cgagattatgtatctggaattctctacagCTACGGCTAAAgcggcgaggg
aaatggcgagtaaggcaagtaatggcgggtgaaagcaagttcgatatttg
acgtacggcattattcgactttgcttatacggtgtttttCCCGttcagag
caaagtagacaacgacatgtcgcctttggtgacgacccgcatgggcagcc
acgcaaccgtagccgtagaatatctccgatacataatctcgctaacaata
gctgattggttgtaagtgacgtaaaatcagtcaatacgtcacttttaacc
aacCAGCTGTGTTGGGTCCGtgaaagacattgcaatggttcatatcatga
attcaaAAGAACATGCATGAGCCAAAACTTCCCCGATTTCCTACTATGAT
TTTATGGAGGGAATaaaaattcgaaaagaaaaatattatgttTTAATAAT
TTAATTGTATAGTCTCATTTATCCTGATTTTATCATCAATATTACATGAT
GATTATCTTAAAATTGTAATATAAAAGCTGTCATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025061-exon-sc0000520-1491911889:199731..199820 | TCONS_00025061-exon-sc0000520-1491911889:199731..199820 | Clytia hemisphaerica | exon |
| TCONS_00025061-exon-sc0000520-1510915933:199731..199820 | TCONS_00025061-exon-sc0000520-1510915933:199731..199820 | Clytia hemisphaerica | exon |
| TCONS_00025061-exon-sc0000520-1575043694:199731..199820 | TCONS_00025061-exon-sc0000520-1575043694:199731..199820 | Clytia hemisphaerica | exon |
| TCONS_00025061-exon-sc0000520-1491911889:200064..201818 | TCONS_00025061-exon-sc0000520-1491911889:200064..201818 | Clytia hemisphaerica | exon |
| TCONS_00025061-exon-sc0000520-1510915933:200064..201818 | TCONS_00025061-exon-sc0000520-1510915933:200064..201818 | Clytia hemisphaerica | exon |
| TCONS_00025061-exon-sc0000520-1575043694:200064..201818 | TCONS_00025061-exon-sc0000520-1575043694:200064..201818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000520 | supercontig | sc0000520:199731..201818 + |
Blast
The following BLAST results are available for this feature:
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