TCONS_00025060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025060
Unique NameTCONS_00025060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025060 ID=TCONS_00025060|Name=TCONS_00025060|organism=Clytia hemisphaerica|type=transcript|length=1983bp
TTATTTATAAAATCAGCTTAATCAGATTAATCATCATTAGCAGTCATTTA
TATAGATCCATAAATAAGATTTGGTTTCAATAGACCTATGGCAGATATTA
AGATGGATAGGACACGTAAGGGGTTACCTTTATAACAGAGAAGATTTCGA
TGAGAAGTATCAAACACAAGACCTTTGACTTACAGTAACTTTAGATATTT
AAAATAGGATTGCAGATTGAGAAGTCAGACAATGGACGGAGTGACAGTGG
TAGTCATTCTATCGATCACGGCAGTTCTCGTCTTCATCCTCAACGTTTTC
TGTGTTTCCATCATCGTCCGCAATCAACAACTACGTTCAAAACCCTCCTC
AATCCTCACCGCTAACCTGCTTTCGATGCATATCCTTCAAGCGGTCGCTA
CAATGCCATTCTACGCGCTCAAACGATTACCTGAAACTAACTCGAATTTT
GTTTGCAGTGGATTTCGTTTTTTCTACATTCTCACCTTTTACATAGCATG
TTTCTGCGTTCTTCTCATCTCTCTAGACCGCTTCTTAGCGTTCCGTTTGA
AGATGAAATATCGTACAACGGTTACAAGTAAACGTATCACGTACGCCCTT
GCGTTAGTATGGGTCTACATCATTACTATGTGTTGTATACCGTTCGCCTT
CCGTACGGAGAAGTGTTCATACAACCCTCCCCCACAGTGGGTCGCCTTCA
TGCTTCTGGTGAACTGTTTCCTACCCTGTCTCGTTATAGTCGGAATCTAC
ACCTACATCATGGTGTGTTTAAGACGATTCGAGaaactgaaaaacatgaa
aacatcACAATCTGGAGGAATggtttcaatctcaaaatcgaACAAACGAA
TCACTCGAAACACAATGATTCTCGTAGCAACGTACGGTATCGCTTGGTTA
CCGTCAATCATTTTCTACCTCATACAATCACTATTTCCAGAAGTCTTCAG
TGATTCTTATTACGACTCAGCAGAGGACCAATACATAAGTTTCTTCCTCA
AATATATCAAATTTGTTGAAGGAATCACTTCACCCGTTCTCTACTGTTAT
TTGAACACTTTCTTCCGTAAAACGGTAATGGACCTGTTCTGCATGGACAC
TTCCGCTATTCGACCTGAACAATCCGAATTTCAAACACAAGCGGTCATCG
TGATTAACGGAAACACTTCTTCCGAATGAAATGTGGACAGTTCAAATACC
GTGTTATACACAGTGGGCAACCGTGGAAACAATTCCTTAGCTGCCTCAGA
GCTTTTGAATTAATCGGAGCAAATCACTTTAAATTTATGTTATTAGTTAT
TGCAGGGGCTCTTTCACAACGCTGTCAAAAGAGCATAAAGTTTATGTGAA
ATGGTGTAATCCTTGGTAAAAGGAGCTATGAACATCAATAATATATTACT
ATGAAGATCAATAATATGGACGTGCGTAGTACCATGCAATAacagcgaga
ttatgtatctggaattctctacagCTACGGCTAAAgcggcgagggaaatg
gcgagtaaggcaagtaatggcgggtgaaagcaagttcgatatttgacgta
cggcattattcgactttgcttatacggtgtttttCCCGttcagagcaaag
tagacaacgacatgtcgcctttggtgacgacccgcatgggcagccacgca
accgtagccgtagaatatctccgatacataatctcgctaacaatagctga
ttggttgtaagtgacgtaaaatcagtcaatacgtcacttttaaccaacCA
GCTGTGTTGGGTCCGtgaaagacattgcaatggttcatatcatgaattca
aAAGAACATGCATGAGCCAAAACTTCCCCGATTTCCTACTATGATTTTAT
GGAGGGAATaaaaattcgaaaagaaaaatattatgttTTAATAATTTAAT
TGTATAGTCTCATTTATCCTGATTTTATCATCAATATTACATGATGATTA
TCTTAAAATTGTAATATAAAAGCTGTCATTGAA
Run BLAST on NCBI

transcript from alignment at sc0000520:196569..201818+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025060 ID=TCONS_00025060|Name=TCONS_00025060|organism=Clytia hemisphaerica|type=transcript|length=5250bp|location=Sequence derived from alignment at sc0000520:196569..201818+ (Clytia hemisphaerica)
TTATTTATAAAATCAGCTTAATCAGATTAATCATCATTAGCAGTCATTTA
TATAGATCCATAAATAAGATTTGGTTTCAATAGACCTATGGCAGATATTA
AGATGGATAGGACACGTAAGGGGTTACCTTTATAACAGAGAAGATTTCGA
TGAGAAGTATCAAACACAAGACCTTTGACTTACAGTAACTTTAGATATTT
AAAATAGGATTGCAGATTGAGAAGTCAGGTGagttagtatatgtaatcac
atgataacgagtgcaattcgaatataattgcacgagtgatttttttgtta
ttaattttccgagtccgaaaggacgagaaaaattaaaaaaaaaaaaaata
acgagtgcaattcgaagataattgcacgagtgattttttagttattaatt
ttccgagtgcgaaaggacgaggaaaattagaaacaaaaaaaatcacgagt
gcaattttcgaattgtacgagttattatgtgattacgagctaatcgcaca
atggctatcactacttttcccagttagttaagtaaattacagaaattaca
ctgatagttttatatttttctcttctctttatgtctttcttttattgttg
tttattgattttctttctcacaaaataaatttcgaatgcaattaaaacgt
tcgatgcaaaaaaaatgtaagaaaaaatattaaaatcaattttgtaaaca
ttggcgcggcattgtagagtgtgattaacgattaattgctctctacagga
tgcaattaacgattaattgctctctgtGAGGGCGTgcgaaataagaaaaa
ataacccatcgtgcgattatatATTTAATAACGCCTTGAGAATGAGACGG
acttaaggtggtagtctaccgccagatttcaaaagtcaacaaatcacatt
ttttgcaataactcaagaacttctttacatttcgtaatgaaattttcagg
aaatgtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCTTTTGGCGTATCACATTGCTATGTTTCGGCCGAGATTGAAGAAATA
AGTCCTTAGCAACGGGATTTTTTCTGTTGCTAGGGCGATTTTTCAAGCAC
GCAACaggataaaaatgctcactgcggcctgaatgataaagatatagctc
tgaaattttcaagagatgttcagaaagacctaaggatcttaaaacaccca
aaaaccagaattcgacaattttttcgatgattttttatttttgggtagac
taccaccttaaggGGCGAAAGCACTTGTCAGATTTCTGATTGAAGTTCTG
ACAGTAAAAGCTAGACTCCGGGatcgaaaaaataatatagAATATGTGTC
AACGAAATTATATCGGAGGGAATTCAGCACTTTAGAGTTTTATTGGGCAC
GAAATTTAACTTGAACGAGAGAAGTCATATGGGTAGTCATTACATGACAA
AATAAGACTCAACCTTAGTTAGCTTCTATTTcgaagtaaaaaacgtaaaa
catttttataaaggTTCCTCAGTAGACTTTCAAATATTGTGACGTATTCC
CTAACATCAATGGCTGACTAGAGAGTGACAAAGTACTCTACTAAATCTTT
TCCATCCCGTATTTGGGAGTTAAAGAGTTAAGTCCTCTGGATCTTCATCT
TGTTTTAGTGCTGCCGTCGATTATTGTTGGAAATACGGGCGTAAATTTAC
TTTATgacaaagatttttgaaaatgtaaaggCCAGCCGTGTGAATATTCT
GTGAGACAAGTCGAAAGAAGAATATTATTTATGAAGTATGAAACACCTTA
AAGTTCTAAATGATATTCACAAAgtttttcgaacaaaaaaaacagatatA
ACTTGTTTACTAATTGATacgaaaaattcgaaaaattctcGTATAGGAAA
GGAAGTTTTAATATTTCTTGGTTAACAGTGTGATACGACTAAATAATGAT
GTAACATGGCGTTTTAAGAAGGACAGAGCTGTTTCATTTTCATAATATAA
GAGCtgccaatttttaatttttacttgaaataagAGAGTTGTTAAATATT
ATATTAATCCAGATTTACATGAATTAAAAATCCATTAACTTTCAAACAGC
GATATCAGCGGTTTCTGttgcttttttctaaaaagtgaTTTACCGTACAA
CGGAAAGTTATATCCTCCCTTTAATTAGAAAACGCATGGAATCTATTTTG
TAACAGAGCTTAATCatccaaaaaataaattttcattgaaCTGTCTGATG
AAACAATTTCATGTCCTCCGGGCAGTAGGATTTAGAGAAGTCTTTCAAAA
AGGTAGGCgacataaataaaaaacaacctaTCGACATTATTAATGCAGAC
AATCTAGTTCGTtgaaaaaacctaaaaatatgaTTCGCGAAGAGTTATTC
TACGAAAACCAAAAAGTCGAGATATGTGTAGTTATGGTTCTTTTGTTTCG
AATGTCTCGATGTAATAATAAACCATGATCTTGATCTCATAATACATTCA
GTAAACTACTGAATGTTTCATTATATTTATCTTTTATCATTTCAGACAAT
GGACGGAGTGACAGTGGTAGTCATTCTATCGATCACGGCAGTTCTCGTCT
TCATCCTCAACGTTTTCTGTGTTTCCATCATCGTCCGCAATCAACAACTA
CGTTCAAAACCCTCCTCAATCCTCACCGCTAACCTGCTTTCGATGCATAT
CCTTCAAGCGGTCGCTACAATGCCATTCTACGCGCTCAAACGATTACCTG
AAACTAACTCGAATTTTGTTTGCAGTGGATTTCGTTTTTTCTACATTCTC
ACCTTTTACATAGCATGTTTCTGCGTTCTTCTCATCTCTCTAGACCGCTT
CTTAGCGTTCCGTTTGAAGATGAAATATCGTACAACGGTTACAAGTAAAC
GTATCACGTACGCCCTTGCGTTAGTATGGGTCTACATCATTACTATGTGT
TGTATACCGTTCGCCTTCCGTACGGAGAAGTGTTCATACAACCCTCCCCC
ACAGTGGGTCGCCTTCATGCTTCTGGTGAACTGTTTCCTACCCTGTCTCG
TTATAGTCGGAATCTACACCTACATCATGGTGTGTTTAAGACGATTCGAG
aaactgaaaaacatgaaaacatcACAATCTGGAGGAATggtttcaatctc
aaaatcgaACAAACGAATCACTCGAAACACAATGATTCTCGTAGCAACGT
ACGGTATCGCTTGGTTACCGTCAATCATTTTCTACCTCATACAATCACTA
TTTCCAGAAGTCTTCAGTGATTCTTATTACGACTCAGCAGAGGACCAATA
CATAAGTTTCTTCCTCAAATATATCAAATTTGTTGAAGGAATCACTTCAC
CCGTTCTCTACTGTTATTTGAACACTTTCTTCCGTAAAACGGTAATGGAC
CTGTTCTGCATGGACACTTCCGCTATTCGACCTGAACAATCCGAATTTCA
AACACAAGCGGTCATCGTGATTAACGGAAACACTTCTTCCGAATGAAATG
TGGACAGTTCAAATACCGTGTTATACACAGTGGGCAACCGTGGAAACAAT
TCCTTAGCTGCCTCAGAGCTTTTGAATTAATCGGAGCAAATCACTTTAAA
TTTATGTTATTAGTTATTGCAGGGGCTCTTTCACAACGCTGTCAAAAGAG
CATAAAGTTTATGTGAAATGGTGTAATCCTTGGTAAAAGGAGCTATGAAC
ATCAATAATATATTACTATGAAGATCAATAATATGGACGTGCGTAGTACC
ATGCAATAacagcgagattatgtatctggaattctctacagCTACGGCTA
AAgcggcgagggaaatggcgagtaaggcaagtaatggcgggtgaaagcaa
gttcgatatttgacgtacggcattattcgactttgcttatacggtgtttt
tCCCGttcagagcaaagtagacaacgacatgtcgcctttggtgacgaccc
gcatgggcagccacgcaaccgtagccgtagaatatctccgatacataatc
tcgctaacaatagctgattggttgtaagtgacgtaaaatcagtcaatacg
tcacttttaaccaacCAGCTGTGTTGGGTCCGtgaaagacattgcaatgg
ttcatatcatgaattcaaAAGAACATGCATGAGCCAAAACTTCCCCGATT
TCCTACTATGATTTTATGGAGGGAATaaaaattcgaaaagaaaaatatta
tgttTTAATAATTTAATTGTATAGTCTCATTTATCCTGATTTTATCATCA
ATATTACATGATGATTATCTTAAAATTGTAATATAAAAGCTGTCATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014089XLOC_014089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025060-exon-sc0000520-1491911889:196569..196796TCONS_00025060-exon-sc0000520-1491911889:196569..196796Clytia hemisphaericaexon
TCONS_00025060-exon-sc0000520-1510915933:196569..196796TCONS_00025060-exon-sc0000520-1510915933:196569..196796Clytia hemisphaericaexon
TCONS_00025060-exon-sc0000520-1575043694:196569..196796TCONS_00025060-exon-sc0000520-1575043694:196569..196796Clytia hemisphaericaexon
TCONS_00025060-exon-sc0000520-1491911889:200064..201818TCONS_00025060-exon-sc0000520-1491911889:200064..201818Clytia hemisphaericaexon
TCONS_00025060-exon-sc0000520-1510915933:200064..201818TCONS_00025060-exon-sc0000520-1510915933:200064..201818Clytia hemisphaericaexon
TCONS_00025060-exon-sc0000520-1575043694:200064..201818TCONS_00025060-exon-sc0000520-1575043694:200064..201818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000520supercontigsc0000520:196569..201818 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.18959	0	0.190423	0	0	0.300994	1.96695	1.24325	0	0.100189	2.77352	0.521617	0.790168	0.571354	2.18905	4.30013	0.259096	0	0.827643	0.21653	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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