TCONS_00024966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024966
Unique NameTCONS_00024966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024966 ID=TCONS_00024966|Name=TCONS_00024966|organism=Clytia hemisphaerica|type=transcript|length=1260bp
tgaattttagagatAGTAAAGAATGCCTAcaataaatttgaataaaagaa
caatgttttcttggaataagaagaaaaaagagCTTGGTTTTGAATTGAAA
TCTCATCAATTTGCAAACTATGTTCAACAAAGATTTGATCGGACCGTGTC
TTCCTCTAATGAGACTGAAGAAGAAATACTTGCTGATGAAATTTCTTATG
TGGTGTCGGATAAAAGTGTAGATGTTACTGGTGTTGGCAGTGTTGCAGAT
CCTCTTGACAGTGAAACAACAACAAATCCATAATACGAGTGTTAGTGGTA
TTAACTTACTGGATGAGACTAATCACCAACAatAGTTGAACGTGACTCCA
AATTGTGTTGCTGATTCTAATCCACCTGTAACTGGAACATTTCAATCTTT
ATTGAATTCAACACCCATGGGAAAAAGGAAAGATCACAGTTTTATCATCA
GTGTTAACttatttcaattcttcaaaGTACTACACCACAAGAAGAAATGA
TaactttctttcaaatgttgCAAAAATTGGACGTAAAAAAACGaaGCTTA
GAAATCAGAAGAAGGTGCTAAAAGCGAAGACAACTATCTCTGACGTCGAT
AAAATGGTGATTGATAAGGTTTTAACGATGGACTTCATGTCGTCCGAAGA
TGAAAACGAGGACTCGAGGTTCAACCACTGAGATGGCTTTCGCAAAAATG
TGATAAGTACTTTGAAGCGTTGGATAAAAGGACAATGACAAAGCGATCGA
CAAAAGCGCGAAGACAAACTGTTATACGCaagatagggcctttcattggA
AGGGCAGCACCTGAGGTCGACGAATCAAATGCATGGACAATAATAACTAA
ATAAACCTTTAACCTATTCATTTTGTTATGTTATGTTACTATTTTGCTTt
aatgtttcttttgtttgagattttctttagcttgatatttttatttattt
cagttaattaacaGCCCCTCTCCCCCTGGGCAGTAGATATGCTTGTAAGA
AAATCAATATGGAAAAAGGCTTTTTAGCCACTTGTTGAATAATGGTTTGA
CAAGCATGTGGTggtgaaatttctcaaatttagggaatttgaaaaatgtg
gGAAGTATAAgagtaaaattttgatattttagtaCCTGCCAAAATAAATG
CAGTTATTGTACagtacatgtttaaaattttgtagaTAGAAATGCAGTAT
AGATTGTTACTTATATATATTCTTACATTCCATTAGCAGTCTAATTTATG
TAATCCAAAC
Run BLAST on NCBI

transcript from alignment at sc0000514:105760..110062-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024966 ID=TCONS_00024966|Name=TCONS_00024966|organism=Clytia hemisphaerica|type=transcript|length=4303bp|location=Sequence derived from alignment at sc0000514:105760..110062- (Clytia hemisphaerica)
TGAATTTTAGAGATAGTAAAGAATGCCTACAATAAATTTGAATAAAAGAA
CAATGTTTTCTTGGAATAAGAAGAAAAAAGAGCTTGGTTTTGAATTGAAA
TCTCATCAATTTGCAAACTATGTTCAACAAAGATTTGATCGGACCGTGTC
TTCCTCTAATGAGACTGAAGAAGAAATACTTGCTGATGAAATTTCTTATG
TGGTGTCGGATAAAAGTGTAGATGTTACTGGTGTTGGCAGTGTTGCAGAT
CCTCTTGACAGTGAAACAACAACAAATCCATAATACGAGTGTTAGTGGTA
TTAACTTACTGGATGAGACTAATCACCAACAGTAAGTTGTTTTAATTGAT
TATTTGATGGTGTGTGCTTGTCTTAAATCTGTTAGTTGAAAAAATCTCTG
CGTTAAAACATGAACTCTTTTCCTGCTTATAAACTTGACTTTTTTTGTTA
TTAAATCAACTTCTAATGTACCAATTAAAATCAATAAAAAAGAGGAGATA
TCAATCGATTTATTAATAACAGTAGAGTTTTTCACGAGCCTGATTACATA
GTTTGATTGTTTATCGATTTATTTTTATTTTTTCTTAATCATTTATCGAT
CGAAATATCTGAGATAAAAACCTCTTGTACTTTTAAATTATGAAATTATG
AAAAACTTAACTGATCTCTTGAGCTAAGTAGAAAGTTTGCTTTATCAAGT
TTATGGTAGTCGAGAACGAGGGGTGGATTATCTGGAAAATTTGTGCAAGA
TTTTGTTGATTTTACGGCAAGTACAAAACGCCTACTACCTACTACTTAAT
ACTTACTACCTACTACTTACTACCTACTGCAAAATAGCTCAAAACGGCTC
GAAATTACCTTTAAAATATTCAGCATGTTAAAATTAGCAAAATCTGAAAC
TTTGGTGGTAAAAAAGTTAAAACTTCTTCTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGGTCTGTAAAGTAT
ACAAACTGAGTAGGTAGTAAGTAGTAAGTAGTAGGTAGTAAGTATTAAGT
AGTAGGTAGTAGGCGTTTTGTACTTGCCGGTTGATTTTATGTGATGTGTA
ATTTTTTTTTGTGATTTATCCTTTATCTGTGATGTTTTGCGAATTTTAAC
GTTTGTGATTTTAGAATTTTTTTCCAGTGGTTTACACCTCGATCTAGAAT
TCTCCTTATCTTACACTCATCGTATTCAAAAGTAAAGATGCAGGATTCTA
ATGAGTTTAATTTAATTATTTTTAAGATAGTTGAACGTGACTCCAAATTG
TGTTGCTGATTCTAATCCACCTGTAACTGGTATGTTTGAAATAACAATTT
TTCCTTCACTCAGCATTGATAACTCAGCATTCTTTCTGTAAATAATTATT
TTGGCCTTTCATTTGCATTTTAGGTGCCTGTGATATTGAATTTTCCTAAA
CTCGAATAAAATTTAGATTTCTTAATGATCATATTGATGTAGCAAATTTG
TTGTCTGTGTATATTTCTGAATATATATTTTTTAATATATAGGAACATTT
CAATCTTTATTGAATTCAACACCCATGGGAAAAAGGAAAGATCACAGTTT
TATGTAAGTATATACAAATGAAGTCATTTTTAAAATATTATAAGAATAGT
TATTCCATTTCATAAAAGAGTAATTGAGATTTATTTGTTGTATTTATTGT
TTTTATTATGAACAGAAAATTGTTGAGATATCTCTTTTTTATTTTCATTT
TTTTATATTGCTGCCTTTGAATTAATATGCAAATGGTTGAATAGAAAAGG
AATTTTTTGATTTAGTGAGAGGAAATTAATTAGAGGTTAGTAATTTTGTC
TCATCTTCAGTTATCTCTTCAAAAAGTACCATAATGAATATTCATTCCCT
CTTTTTCAATCTCAGCATCAGTGTTAACTTATTTCAATTCTTCAAAGTAC
TACACCACAAGAAGAAATGATAACTTTCTTTCAAATGTTGCAAAAATTGG
ACGTAAAAAAACGGTAAGAGGCCTTATGCTTAAAATCTATGAACTATACT
GTGTTCTTTCATTTTCATATAAACAATAGATTGATGTAATGATGTGGCCA
CCCATCTTTGTGGGCATAATATCACAATAGCTGAAGCTTTCTGTATTGAA
ACCGTTAACACGTATTTGAAAAACATATATGTTAGGCTTTTTTATAGATT
TACCGGGGGTCCTACTTGAAAGTTGTTGTGCGCAAAAATTTTGCCTGCAA
TGATAGTAGCTGAACACTTTGAAGAAGTTCGGAAAACATTTAATCACAGA
TTTTAGTACTTTATCTTTTCAACCTGCATTACTTTTCAGCTTTTACAGTA
TTACTTCAATCATTGTTGTCTTTTTCCTTTTTTCAGAAGCTTAGAAATCA
GAAGAAGGTGCTAAAAGCGAAGACAACTATCTCTGACGTCGATAAAATGG
TGATTGATAAGGTTTTAACGATGGACTTCATGTCGTCCGAAGATGAAAAC
GAGGACTCGAGGTTCAACCACTGAGATGGCTTTCGCAAAAATGTGATAAG
TACTTTGAAGCGTTGGATAAAAGGACAATGACAAAGCGATCGACAAAAGC
GCGAAGACAAACTGTTATACGCAAGATAGGGCCTTTCATTGGAAGGGCAG
CACCTGAGGTCGACGAATCAAATGCATGGACAATAATAACTAAATAAACC
TTTAACCTATTCATTTTGTTATGTTATGTTACTATTTTGCTTTAATGTTT
CTTTTGTTTGAGATTTTCTTTAGCTTGATATTTTTATTTATTTCAGTTAA
TTAACAGCCCCTCTCCCCCTGGGCAGTAGATATGCTTGTAAGAAAATCAA
TATGGAAAAAGGCTTTTTAGCCACTTGTTGAATAATGGTTTGACAAGCAT
GTGGTGGTGAAATTTCTCAAATTTAGGGAATTTGAAAAATGTGGGAAGTA
TAAGAGTAAAATTTTGATATTTTAGTACCTGCCAAAATAAATGCAGTTAT
TGTACAGTACATGTTTAAAATTTTGTAGATAGAAATGCAGTATAGATTGT
TACTTATATATATTCTTACATTCCATTAGCAGTCTAATTTATGTAATCCA
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014031XLOC_014031Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024966-exon-sc0000514-1575043694:109732..110062TCONS_00024966-exon-sc0000514-1575043694:109732..110062Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1575043694:107534..107586TCONS_00024966-exon-sc0000514-1575043694:107534..107586Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1575043694:107260..107320TCONS_00024966-exon-sc0000514-1575043694:107260..107320Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1575043694:106850..106947TCONS_00024966-exon-sc0000514-1575043694:106850..106947Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1575043694:105760..106476TCONS_00024966-exon-sc0000514-1575043694:105760..106476Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1510915933:109732..110062TCONS_00024966-exon-sc0000514-1510915933:109732..110062Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1510915933:107534..107586TCONS_00024966-exon-sc0000514-1510915933:107534..107586Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1510915933:107260..107320TCONS_00024966-exon-sc0000514-1510915933:107260..107320Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1510915933:106850..106947TCONS_00024966-exon-sc0000514-1510915933:106850..106947Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1510915933:105760..106476TCONS_00024966-exon-sc0000514-1510915933:105760..106476Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1491911889:109732..110062TCONS_00024966-exon-sc0000514-1491911889:109732..110062Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1491911889:107534..107586TCONS_00024966-exon-sc0000514-1491911889:107534..107586Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1491911889:107260..107320TCONS_00024966-exon-sc0000514-1491911889:107260..107320Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1491911889:106850..106947TCONS_00024966-exon-sc0000514-1491911889:106850..106947Clytia hemisphaericaexon
TCONS_00024966-exon-sc0000514-1491911889:105760..106476TCONS_00024966-exon-sc0000514-1491911889:105760..106476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000514supercontigsc0000514:105760..110062 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.662518	0.923718	0.0909969	0.0625	6.00384	3.5335	3.19949	3.38253	2.25521	2.74815	2.44497	2.13283	1.58975	2.003	1.50166	2.55252	1.66248	1.65299	1.41601	1.47261	2.77317	3.33079	2.11128	2.5209	0.680205	1.35035	2.98786	1.83577	1.58304	1.03231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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