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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024964 ID=TCONS_00024964|Name=TCONS_00024964|organism=Clytia hemisphaerica|type=transcript|length=787bp
TTgggaaaagtattttttcatcaCCTGTTTTCATAGTTCGAACTGACCCA
AGAGCTACCAATGGAGGGTACAGCCAATGGACAAGCTGGTCTGTCTGTAA
CAGAATATGTGGACAAGGTCAGCAAACAAGAAGTCGAACATGCACCAATC
CTGAACCTTCCAATGGTGGTACAAATTGTGAGAGTTTGGGACAGTCAAGT
CAAATTAAGAGCTGCAACTTGAAGTCTTGCTtcGAGACAAAAATTCAAGA
ATGCTCATGGAGGTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGTAA
AGCATTCCTTATGGAAtgttatttcaataaaaaacactCCACGACATCTT
TATTGGTCTTTGTCAAAACGAGTGTACGTATTCATGAAGATCCATGTTCA
CATTGTTGTGCAAgatattacgtcactttcaatgGACACGAATGTTCTCC
AGTGCCGATAGACCAAGCAATTTCAATGGAGAGCAAAAATAACGATTGGA
TCCCTTTCACAATTCAAGGCATCTGTAAACTCACCAATTGGTCTGGTAAT
ATTAAAGTGGGTTTAAACGTTGGACAATGCGGTTCAAAAGCGTCTCTCGA
CCCAGACACAGGCAATGATACTTTCGTCACCAGCAGTATAATTATAGAAG
AGGTCGAAAATGCCAAGTTTATTAACGTTTAGAATGATGCAAAGTAGCCT
AGTTTAGTTGAAAAGGACATtaatattttcccaaaatggGCATATATTTT
CCACATCTTATAGTAGTTTAGTATTTTTGAAGGggaa Run BLAST on NCBI transcript from alignment at sc0000514:200966..204715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024964 ID=TCONS_00024964|Name=TCONS_00024964|organism=Clytia hemisphaerica|type=transcript|length=3750bp|location=Sequence derived from alignment at sc0000514:200966..204715+ (Clytia hemisphaerica)
TTgggaaaagtattttttcatcaCCTGTTTTCATAGTTCGAACTGACCCA
AGAGGTAAAATCGCAATTACAGaacaatgttattttttattgaatcaaac
agaaaagttaaatttttcgaCATAAAATATTGATCGAATCATCAGGACCC
TTTGAAGAGATCCCAGCTGGCATCGCATACAACGTTGTCTCAACGTTCAT
CCAACGTTATATGAATGTTGTGagcgttaaataaacgttgaaacaatgtt
gtgtaccagctgggattTTGAGACTACCTGTTAATTTGTTTGTCTTTGTT
AAAATTATTATATCGAGAATTTTATGAATTCAGAAGGAAAATTCTTTTCG
GTATGTGGGTGCCCTAGGAGTTGAGTTTTTTACCCTTTCAAAGTCAATTT
TGTCATTCTAAGAGTCGCCTTTTCAGCACAAATCAGTCTGTGTAAGAGTA
AGGGTTTTTTAATCGAATGTTTACTAAATTTCTGAGATTTTACATAAAAT
TATAATTCATATAAGCATATAATAATCATAGGCTATGCCTGGATACTTTG
AAAGCAACTTATAGACAAATGTTTCACATGTTATGATTATtaaaaggact
tttagtgctcTATTCTCTATAATGTAGCTACCAATGGAGGGTACAGCCAA
TGGACAAGCTGGTCTGTCTGTAACAGAATATGTGGACAAGGTCAGCAAAC
AAGAAGTCGAACATGCACCAATCCTGAACCTTCCAATGGTGGTACAAATT
GTGAGAGTTTGGGACAGTCAAGTCAAATTAAGAGCTGCAACTTGAAGTCT
TGCTGTAAGTTTTTTATCCAGCTCTCATAAAGTATCAATGTTTGCCATAT
TGAGGCCccctacaatcaaggtcataatatttgacaaaatagagaaattc
cccaggaaaatttgaaaccacaatcgatttgtaagtgctctaaagtaggt
tcgaagggtacagatataactctgagttttaacgctagacttgggacctt
aggatctgaggatccaaaagctaaaaaatagtccaataaggctcagaata
tagcctggaagtctgacAACCCCTCCAACATTGAAAtaattcgattaaat
taaagagatagcccaaaatcgactttctcgccggaactttaaatcttgaa
aagcGTTAatataaccggaattctcaatatattttgaccatgattgtaga
acaCCCTTGATTCACGCATTCGCGTAAgtttctttttctaaatttacaaa
aactgaATTACTAAGTAGATCAGAGAAACTTTCTGGAAGGTCAGGGGAAT
TTTACGAAATTTAAGTACACAGTGATGAAACTTTTGATTATAATTATCTA
ATtgtcttttcatttttagtcGAGACAAAAATTCAAGAATGCTCATGGAG
GTCATACGTGGAGCAGAACAGCGGCTTGATCAAAGTAAAGCATTCCTTAT
GGTATCACTGACAGCAATCGAATCTTAGTCGTCTCTAGGAGACAAAGtcg
atattttttaaattaaggACATTCCTTCCGACAGCCTGTTAGTAGAAAAA
TGCCATTGTACATGCAAAGGCAACACCTTCTTTTCCCTGGGAAAAGTTGA
AGATTCCTTTCTAGTCTTCGGTCGAACGACTTTATATCATTGGTACAGGC
TAAAGCAAAGGCGTTCGTGACGTCACTCGTACTCGCGAATTATTTCCCAA
TACTTTAGCTGTAGTTTAAACGGCCGACATTTAGTCCTGTcttttctaat
tgtgaattaaagtgggcaaAAGATTGGCTatctaccagtggatacccctt
aaaaccacataccccttaaaacccacaatgttgcatttttggctttcata
actaccagatttaattttatgtggtatgtattgattgaaagtgatttttt
acaacctcttataaatgttctttcataaaataccaaattttaaggatttt
aaagatgctaaagtatcttaaaattcgaagttattcaaaattttatcNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACaacgtacttt
caacacaaaaagtttcagccttacactccaactaaacaatgagatagagg
gtaccactttttattgtgggttttaaggggtatccactggtaaggTCAAT
ACCTTGCCTACTTTTGACGTCAGCGCaatttattctttcaatcttttcca
aaaattttaattgtcaaCTTTTTGTCCACTGTTTGCCTACACTTGCAACT
AGAATAGACCTAGGGTAAAAAGTCggtcgtctaaactagagcttatttat
attaatattttgttttcactttaCAGGAAtgttatttcaataaaaaacac
tCCACGACATCTTTATTGGTCTTTGTCAAAACGAGTGTACGTATTCATGA
AGATCCATGTTCACATTGTTGTGCAAgatattacgtcactttcaatgGAC
ACGAATGTTCTCCAGTGCCGATAGACCAAGCAATTTCAATGGAGAGCAAA
AATAACGATTGGATCCCTTTCACAATTCAAGGCATCTGTAAACTCACCAA
TTGGTCTGGTAATATTAAAGTGGGTTTAAACGTTGGACAATGCGGTTCAA
AAGCGTCTCTCGACCCAGACACAGGCAATGATACTTTCGTCACCAGCAGT
ATAATTATAGAAGAGGTCGAAAATGCCAAGTTTATTAACGTTTAGAATGA
TGCAAAGTAGCCTAGTTTAGTTGAAAAGGACATtaatattttcccaaaat
ggGCATATATTTTCCACATCTTATAGTAGTTTAGTATTTTTGAAGGggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024964-exon-sc0000514-1491911889:200966..201019 | TCONS_00024964-exon-sc0000514-1491911889:200966..201019 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1510915933:200966..201019 | TCONS_00024964-exon-sc0000514-1510915933:200966..201019 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1575043694:200966..201019 | TCONS_00024964-exon-sc0000514-1575043694:200966..201019 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1491911889:201593..201769 | TCONS_00024964-exon-sc0000514-1491911889:201593..201769 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1510915933:201593..201769 | TCONS_00024964-exon-sc0000514-1510915933:201593..201769 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1575043694:201593..201769 | TCONS_00024964-exon-sc0000514-1575043694:201593..201769 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1491911889:202335..202416 | TCONS_00024964-exon-sc0000514-1491911889:202335..202416 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1510915933:202335..202416 | TCONS_00024964-exon-sc0000514-1510915933:202335..202416 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1575043694:202335..202416 | TCONS_00024964-exon-sc0000514-1575043694:202335..202416 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1491911889:204242..204715 | TCONS_00024964-exon-sc0000514-1491911889:204242..204715 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1510915933:204242..204715 | TCONS_00024964-exon-sc0000514-1510915933:204242..204715 | Clytia hemisphaerica | exon |
| TCONS_00024964-exon-sc0000514-1575043694:204242..204715 | TCONS_00024964-exon-sc0000514-1575043694:204242..204715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000514 | supercontig | sc0000514:200966..204715 + |
Blast
The following BLAST results are available for this feature:
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