TCONS_00024892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024892
Unique NameTCONS_00024892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024892 ID=TCONS_00024892|Name=TCONS_00024892|organism=Clytia hemisphaerica|type=transcript|length=1421bp
ATCATCATCAACTGGGAGACACAAGATGCTAGCGTGCAAGAGATTAAACG
ACACTACTCACAACACACCGGACAACAAGATGCATATTCTCGGACACTTT
GTTGGCAAACAATACAACGCCATTgtgGCTCAACCAATCACACCTCAAGA
CATGAACGAATTGAAGAGTGCGTTTGCTTCATTCGATAAAAATGACGATg
ggtttatttcgaaagaagaACTTTCTGAAGCCATGGCTTGTTTGGGTCAC
AAAATCTCCAATGAAGAATTAGATGACATCATTAAAGCTGTTGACATCGA
TGGTAATGGTTTGGTGGATTTCAAAGAGTTCATTAATCTGATGGATAATA
ATTGTCTGGTACAAAGTATGGATGAGGAGATGCAACATCTCTTCCAAATG
ATCGATAAGAACAATGATGGTTACATTACCGAGAAAGAAATCAAAGCCAT
GTTGAAAGGAATGGGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGA
TCAAAGAAGCTGACCAAAATAAagatggaaagatcagtttcaaTGAATTC
AAGACTATGGTTCAAAATGGTAACTACCTGATATGAGAAGGGGTGCACGC
CAAAACAACAAGCTATGGCGTATCGCGTCCTTGAGATATCACTATATCGT
TCGCCTGCCGTGACAAAAAAGATTACATGTAGAACGCGAACCGATTTGAC
TGGAGGACCACGAAAGTTTGCTGCTGTCAGAATCTATACTCAATGTCAAT
ATTTGTTGAAAATGCAAGATATTCGGGAGAGATATAATGAAATAAAGATG
GCAGCTTCTGATAAAAAGACGCATAATTAGAGAGATAAGGAACATTAAAA
GGACATGAGTCTCCTCACATGATAGAAATGAATCCACATATAGACATTCA
ATCAATTCAAATTGTATATAACTTGTAAATATGTTCTTGTATTTAGTAAA
ACAAATTGTATTGTCTAattttgttgacaaaaaaattCTACACATTGAAG
GTAGATTGAGCCTAAAGATtcttaaataattttttggcaGACTGACTTTT
GGTCAAAGGTCTTCTTGACCCTTCCTGGCACCTCAATTTCACCAAAATTC
TCATGTCCTCAATCCCAATACTTTTATTCAGGAATGCTGACTTTAATCCC
AAACGACACTTGTTAAATATACATTTTTATTCCCAAGCACTAGTCTTGGA
AGTTCGAACAGAAAAACAATACTTTGATGTCAGAAAAGAACAGTATTTGG
TGATTCGCTAAATCTAAGTCAATCAGGGCATGGCAGGCGTACCAAAAATA
CCTAAATATAGAAGAACACGGCATTAAATTCACTCACAAATTGTCGCAAG
ATTCCTCATTATAAAATGgagtgttaaaaaaatgctttcaactaGTTTAA
AGTTCAAGGATTTGGACTTAA
Run BLAST on NCBI

protein sequence of TCONS_00024892-protein

>TCONS_00024892-protein ID=TCONS_00024892-protein|Name=TCONS_00024892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
SSSTGRHKMLACKRLNDTTHNTPDNKMHILGHFVGKQYNAIVAQPITPQD
MNELKSAFASFDKNDDGFISKEELSEAMACLGHKISNEELDDIIKAVDID
GNGLVDFKEFINLMDNNCLVQSMDEEMQHLFQMIDKNNDGYITEKEIKAM
LKGMGEKVRKKDIRKMIKEADQNKDGKISFNEFKTMVQNGNYLI
Run BLAST on NCBI

transcript from alignment at sc0000512:157329..167276-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024892 ID=TCONS_00024892|Name=TCONS_00024892|organism=Clytia hemisphaerica|type=transcript|length=9948bp|location=Sequence derived from alignment at sc0000512:157329..167276- (Clytia hemisphaerica)
ATCATCATCAACTGGGAGACACAAGATGGTATGTATCTTCGAAAGTAAAA
CTTTATTTTGAAAACATTGCTCACTTTTCATTTTTCTATTCTTCGTTTTC
CTCTCTGTTTCACCTTATTTATTAACCACGAACAAGTCGTAATAGAGACT
TTTTAGAGAGAAGGGAGTGGGCGGAAAAGTTCAATTTCCGAACCGAAATC
TTTTTATTGACCCCTTCCTCCTCCTTCTTGTTAGTCAGATACTAGACTAT
ACAACTATGGTAAAGTCGCTATATAAAACATAACTTAAAAGGTTGAGTAA
AAGGTTAGTAAAAGGCACAAAGGGAAAAGTTTTAAAACAAGTCATAGGCG
TGGCACTAGATAAGCGGCAGTTCATACTTTATCCGCTTTTTTACACCGGC
CTTCACTTAGCGCCGACCTTGTTACGCCAATTTCTTTTCAATTTTTAGCC
CGGTCCTAATTCAATTCAGATCCCTTACGCCATCCCGATAAGGTAGTATA
ATGCACGCACTACAGCGGCAAAAATTCAGGCATGCTCTCGCCCAATCATA
CGCAGAAAATTTAAAAACGGAGATTCAAGTAAAAGAAAATTGACAAGAAC
TAACTTCAGTGATGATTGGTCTTTAAAACTTTAAATTTTTCGAGAAGAAT
CTTTCTCCCTTAGTTAATTGAATTATAGTAAACCCTCTCTAATTCGCACC
TTCATTGATTCGAATCTTTCTTCCGATATATTTAATACATTTAATATCTT
CGGTCCTTATTTTACACGCTCTTTAGATTTGTATAGTTAGGCCGTGTTTA
TATGTAGAAAATTTTAGTTTACATTCTATGTTCCAAGTGTCCGCTTATAC
TGCTTTTACATTTCTTATTTCGATTTAAAACATTGATTTTTAAGAATTTC
ATTTAATATACTCTCCGTAAACCGAATCCCTCTATAATTCGAAGCAAATC
CTTAGTTCATTAAAGATCGAATTAGAGGGAGTCAGCTGTATTTTCATTTT
TCTGAGGCAAGTGACATAACACACCCTTGGGAACGTGTTCATGTATTATA
TGAGCGACCCCTACCTCATCAAAAGAATGTTCTTAGTTTAGTCAGTGACT
ACAAAGTGGAAGTTCAGAATTGCTCTGTTTTCGTAACAAAGCTCATATAT
CAATGGATACCATTTCGGATACAAAACATAGGAAAGCAGACTTAAATTCC
AAAAAAATAATTCATTTCGCAAGCGGTAAGCTTTGTGGCTTAGATAATCA
GGCATTGACGTCAGCAAAATTAATTAAGAAAATTGTTCTAATCCGCTATG
GTGTATACAGCATAGTTTGAGGACATACTACATGCTTGTCACATGTTTCA
CTAATGATAATATGATAGCATGTAGGGTTCTGAACGGAAAATTGTTGAGC
TTTACTTCAGCATTTACTGAGAGTATTTCTAAAGGATTTCGGTGAAATTA
TTTGCTTAGGAACAAAAAGAGCCTAAAAAGAAATGAAGATTCGTAAAGAA
ACAAACATTGGGCATAAAGCCTAAATTACTTTTGCTCTGAAAATAAGAGA
ATGAAGAAAGTATCGGAAAAGAACATGCAGAACTGTAATTCGTACGGTAA
TTTAGGGAGATAACGTCTTTTCAGCTAAGGTTCGGCTTTCCGGGATGTTT
CCACTATTTTTTTTTCTCGAAAAAGCCGGCCGAATATTCAAAAGGTTTTT
TCTAGGGGTATGAATAAAAGGGGGCGGGGCGTCAATCCTCTTTTTTATTT
GCGCTAGACCTGGGAGATCAAATGCTGAGTTGGAGCGCCACACCTACTCT
CAGCTCCCAGTAACTTACCTACCCAATTCAAGATTTGGTGGAGACCGGGG
GTCGAACATAGATTTATAAAGCCCGAAGGGCTGGATGGCGTGCTTTTGCT
GAAAAGTGTGCCGTGGTTAGGTAGGAAATCCTACCTAAGTCACATGACAA
TCACATTATAATATAATTTCAGCGATTGACCAATCAGAAGCTTCGCGAGT
TTTCGAAAACAATAGCAGCAATAATTTTTCCGATATTCACTTTTTTATGC
ATGCGATGGCTTAAAGCACGACATATCGATTACATCTATGGGTCGAACCC
ACAACCCTTAGATTGTAAGGCGAATGCTCTACCGATTAAGCTACAAAAAA
CCTAACAGTCTAATGATTGATTTGAATGCTATATTTGAAAGTTTATTTAT
GGAACAAAAAACAATTTTAAAATAACTTTCTTGAAATGATTTCAAACTGC
ATGCGCAAAAAAGAGAGAATGTTTTCTACCACACCATATGCTTCAAAAGT
TTGAAGGGAAGCAATAATGCTTTATCGTTGAAAGGAGCCTTCCGTTTCTA
TCTCCTGAGAAAGTGTAAAATAATGTGTGACAGAACTTGTAGATGGAGAG
AGGGTTTCTCACTTTTTTGTTGAGGTGTCCAGCAAAATGTTTTTTTGTTC
CATTTCCTTATTTGTACAAAATGAGAAGTAAATAGTGGGAGCCCTATCTT
GGCTGGTAAAAATAGATCAGGTAAAAGATATTTAGAAAAAATATCATCGC
TTTATCTAATATTTTGTCACAGTTCGACTGGNAAATAGATCAGGTAAAAG
ATATTTAGAAAAAATATCATCGTTTTATCTAATATTTTGTCATAGTTCGA
CTGTTGCAAAGGATCCTAAGATTTTCAAAGATCTTTCTCAGAAAGCCTGT
CATTAAAAGTTTATGTTATTGGATAATTATTAATTCCCCAGTATTCGCGA
AAGTTTGATATCGTTTCTTCGAGCTAGCGAATTCTAGTTGTGCGAAGTTC
TACAACCCGAAAATAATTTGGTTGGGTAAGTCTTTCAACATATTATGAAG
AAATCGGAAACAGACAATTTGAAGTGTCATTTCTGTTTCAAGTGGGTCTG
TCAACTGTGTGTCTTATTTTGAAAAAAAAAAACTCGTTTGCAAAACTTTT
GCACAACTTGTCAATATATCAGTAACACATGAAGACCACTCATATTGTAA
GTGGCTTTTTTATAAGCAAATCTAGAACAGGAAAGGATACACAGTAACAC
ATTGCCAACTAAACGTTAGTGACGAACGTGTATAGTCCAACTATTAACGC
ATTTGGCAGCCATTTTAGGCCAGTAATGACGTAATATTATGTATGACTAC
AAACACATAGAACACTTGAATTTTCTCATCTTCCCACCAAAACATGATCC
CTAAAAGTTGAATTGTAAGCAAGTTTGAAGTCATGAAAAGTTAGTGCAAA
ATTTCGTGAAGTTTCACAAGTTGAATATGTAAAGTAGCGATCTTCAAGTA
CTAATTAATGATTCAGTCCTGAAATTACTTTAAAAATTCATCATGGTAAT
GATCTATAATCACGTTTCATCAATCATCTTTCAAAAATATGCTGATTTCA
GCATTTCTTCACGAATATTATTTAACACACTCGCATGACATAGGATGAAC
CAGGATTTTGAAGGCTTGAGTTACACAACTGAATGCTGAATAAACAAAGC
CTGAAATTAGAAATCATCAAAAATTTTCCGTAACCGCAGAATATCAAAAT
AATAGATGCAAGTGCTTCTTTACAAGCGAAAACAGGAATATATACCTTAT
CAGGAAATGGGAAATTGTTGTGGGGCTGACAAAAAAATTTCCTATCGAAA
ATCTTACCCAATTGGTAATGTGTCCAAAAATATGAATTTTTTGAAAGGTG
AGAAAATTCCCCCCCAACTTATTAAATACCAAGTTTATCCCTAGCCTAGA
CATAACTAGTATATATAATTCGTTTAAATTGCTTCATATATGATATTGAT
GTGCTTATAAAAGATGTTCTTACATACGATGGCCGAAATGATGTGTAAGG
ATTGCACAACCAACGGATAGTGACATGAATACGCACGCTGAGAGAAACAT
TAAAATTTGTTCATCATGAATTAAAAAGACCGTTTTTTCTAATGTCCAAT
TTCTGAAAAAGGTTTATCATTTATTTAGTGTATGGGAATAGAAAAAGGTG
ATAAAAAGGTCCCTAACCTAAGTGCGTATAGCGAGTTGATGATAAAAATA
AAAACAAATATTCCGAATCTAAAGCGAGACGTGACCCTTCTTAGCCTTTT
TAGGAAACAAACATAAATAAAAAATCGCTAGCGAACGAACGAAAAAACGA
CGTCATAATATATGCGTATTAATTAGCATATAAAGATAAAGAAGTCATGG
CAACCCTTTCTAGAAAAACCGGTCTGTACAGAGAAAATGATAGAATATTG
GCACCAAATTTTGCTGACATCATCAAATAAGATTGCGGTCGTGATGCATT
CCTCTCCCTTTATTTTTCAAAACAAAAATGAGATGGATGATTAAAAAAAC
CGTAACTCTAATTATAACCCTTACTCATAATTTATGCAAAGAATAAAAGA
TTACATCATGAATAATTAAGCTTTTATTCTACGTCACCTTTTGTTTAACG
TTGAATAAATAAAGAGTGCGGAAAGAGGAGAAAAGGTATAAAACTTTGAG
AAAGAGTGCAAGTATTTCAGTTTCAAATTGATTTTCATTCCAGCTAGCGT
GCAAGAGATTAAACGACACTACTCACAACACACCGGACAACAAGATGCAT
ATTCTCGGACACTTTGTTGGCAAACAATACAACGCCATTGTGGTAAGAAA
AATATTTTCAAGCAAAACATTCCCACTGGTGTAACTCTTAATTCCCATGA
CAACGCTAGCGTAAAAACAAGATGTTTTGCAAGTGTAATCTTTCCTCTGA
TGATATTGACTTAAGAATTTTGATACAAAAAAAGTTACAAGTTTTAAGAT
TGTGATCACACACGAGGTGTCAGTAGGGGCATCGAATTGGTGATACACAG
TTGTCAAGGGTGATGACATAAACAAAAGATTTAATGCAAAGAAAGAGAGA
GAGATAGGAAAGCGATAATAACGGCTTATTAAATCATCATGTGTCGCTAT
GCTTACTACATATACTTGCTTTAGTAATAAGGATTATGGGATGCACAAAA
CAAAGTGATCAATGCCAATCGAATAAAAAAGAAAAATGATTAAATCTATT
AATTCTGCACTATTCATCTATGGTAAATGCCTCAGGATGAAGGAAAGAAA
GCAAGAAAAAATTGTGAACTATAGCACAGTGGTTTAGTTGGTTGATCGAG
AGGAAAAATTTTTGTTGTTGGATGCTGAACGAATTTTGTGAGAGTTGATT
ACAATCATCCAAGAAAGGTTTCTTCGTTTAGAAAGCAGTATTCTCTTTGT
GTTTTCCAAACCACTTTTCTAGCGGATAAACTTTATCTTGTAGGATGATC
AACAATTTTTTCCTTTTTTTCTTATTTTATCAGAATTCGTTTTTTCTTCT
CTTTCTTCTTGTTATACCTTCATAATTCATGCAGTATAATGTTTTGACAA
CAAAAATTCTTGGATAAGAAAAGTTCTGCTGTTTGTTAGTTACCAACTAG
CTTGGGNATTCTTGGATAAGAAAAGTTCTGCTGTTTGTTAGTTACCAACT
TGCTCGGTAGAGTGTAGTCTGAGTGACAGTTGTTTCAGGGGACAGCAAGA
AAATTGATACAACGTGGCTTCAATATATGACTAAAAGATAGTGGACAGTT
TTGAGAGCGTTGCAAATGGAATATGAAGCAGCCCAAGGCCAAATAAGGCC
CTAAGGGTCGAAATCTAGCAAACATATTTGCCAATTACTGTACATTAGAA
ATTCTGAAAAATATCCTTTAATTTTTGATGACGTCCTATAGTTACTAGGC
AACTAGATTAGCAACCAATTCTCTTGAAGTTAATCTGGGACGGTTTTGAT
AAGAGTTCAATAAAATTAGATTAAGAATTCATTTTGGGTCAGTGGATTTT
ATTGAAGAGAATATGTCATCTGATTAAAAGCGATCGAGTTTTGCAAATAA
ATATGAACTGTTGTGAGAGGGTCATAGCATGGGGAGAGTTTGTGATGTTT
ATGTTTCAGCCTTGTTATGCTATAAACTATTTTTACTTTTAGCTTAGTTG
CTTGTTTCTAACGAGAGTTTAATGAACAAGGTCATAGGTGTTTGTAGAAG
AAAATAATATACATCTTTCAACTCATCAAAATTCAAACAAAAAATTGTGT
AAAGAATAGTTACCATAGGGAATTTGTACACATTTTTTTTTCATGATATG
TTTTCATCTCTTTGACGGATTGATGGCAGATTTTTTTCATTCAAAATCCG
CGAGTTTGATTGCAAAGAAAAGATTTTTATGAGAAAATGAAATATATCGA
TTACTAGCGAGAAAGGACCGGTACATCGCTCTGTGGGACGATATATCTCA
TTACTTAGACTATAATTTTTTGATGTTATATTTTTGCTTTTTATTTGAAG
TATAAAAAACACAGTTGGAAAATTAATCAGAATTTAAACAGTTGTTTTGC
TTTTCTGCTGGTTATTTTTTTGGAGAAAGAAGATGTCGCACGCGCCGTTG
TCACAGAAAAAGAGTTACACTACGGTACAGACCCCTTGCTATTCGCCAGA
CATTACTTTTCACCAGAGGGCCTGTTATTCTTTTCTGGAATAAAAATAAC
GAAGGGAACGGAAGAAAAACATTGCTATAACTGATACTTTTTTGGTAGAG
AAAAGAAAAACACCTTTCGTATATAATGATTTTTTTTTTGTTGAAAAATA
ACCTGAATCAAAACAAAAATGAGAGAAATCTTCTAATCTCCCTTCGTTCG
TCACTTTTTCTTCTTTTCATCGCTTATAATTTTTTCTTCTTCTTCTTCTT
CTCAAAAACAGGCTCAACCAATCACACCTCAAGACATGAACGGTAAGCAT
TGATACAATATTTCACCGGAATTGAAAGCTAATCTAAACCCAAATATTGC
AGGAGCAAAACTAAACACCCCTGTTTCGGGAGCTCGTCTAAGTGAAATTG
GAGTCAAATCCCACTGGGCACTGAAATGAAATTTCTTGGGCACTGATACA
GGGGTTTATCAAAGGTACTGTTTCTGATATACAAAGAACACCTTTGGCAA
TTATATCTCCCTCATTTTTCAATAGAATTGAAGAGTGCGTTTGCTTCATT
CGATAAAAATGACGATGGGTTTATTTCGAAAGAAGAACTTTCTGAAGCCA
TGGCTTGTTTGGGTCACAAAATCTCCAATGAAGAATTAGATGACATCATT
AAAGCTGTTGACATCGATGGTAAGTGTGAACAAACCCTTATGTCAAAAAA
GAGCCTTGGATCAAAAACTATGAGCAGATGCCACCATATAAAGCAATAAA
GTGCACCATTCTTTTTGTTATGTGATAGGAAATTTCTACCGATGTAATAA
CTTTGCCAGGAGAAACAGCTATACAATTTCATTAATTTGGCAGCTTATTG
AAAAAGTAATGTTTAAGGATTTCCGTCAGGTAATGGTTTGTGTAACCATT
TCCTTTGTAAGAAAATCTGAAGGAGAGAGAGGCTTAGTAAAAAATCTATT
AATAAACGGAATGGTTCATTAATAGGATGAGATTAAGGAGATAATGAGAT
CCAACCTTTCGTTAATCTTCTGTAGGTAATGGTTTGGTGGATTTCAAAGA
GTTCATTAATCTGATGGATAATAATTGTCTGGTACAAAGTATGGATGAGG
AGATGCAACATCTCTTCCAAATGATCGATAAGAACAATGATGGTTACATT
ACCGAGAAAGAAATCAAAGCCATGTTGAAAGGAATGGGAGAAAAAGTCCG
CAAGAAGGACATCAGGAAAATGATCAAAGAAGCTGACCAAAATAAAGATG
GAAAGATCAGTTTCAATGGTAAATGCTTTACTCACTTTAGAAATTCCACA
AAAATCCCTTGTGTTGTCCTTAATATCAAATTGAAAATAGCAATAATGGG
GGGAAAAAAAAACGATTAGTATCGCAATGGTGTATGCAAGAAAGTTTTGG
TGTATGTAAAATATCTATTCCATCAATCTAATCAAACAAAACTTTTTATC
TTGTTTAGAATTCAAGACTATGGTTCAAAATGGTAACTACCTGATATGAG
AAGGGATGCACGCCAAAACAACAAGCTATGGCGTATCGCGTCCTNTTTCT
TGGGCACTGATACAGGGGTTTATCAAAGGTACTGTTTCTGATATACAAAG
AACACCTTTGGCAATTATATCTCCCTCATTTTTCAATAGAATTGAAGAGT
GCGTTTGCTTCATTCGATAAAAATGACGATGGGTTTATTTCGAAAGAAGA
ACTTTCTGAAGCCATGGCTTGTTTGGGTCACAAAATCTCCAATGAAGAAT
TAGATGACATCATTAAAGCTGTTGACATCGATGGTAAGTGTGAACAAACC
CTTATGTCAAAAAAGAGCCTTGGATCAAAAACTATGAGCAGATGCCACCA
TATAAAGCAATAAAGTGCACCATTCTTTTTGTTATGTGATAGGAAATTTC
TACCGATGTAATAACTTTGCCAGGAGAAACAGCTATACAATTTCATTAAT
CTGGCAGCTTATTGAAAAAGTAATGTTTAAGGATTTCCGTCAGGTAATGG
TTTGTGTAACCATTTCCTTTGTAAGAAAATCTGAAGGAGAGAGAGGCTTA
GTAAAAAATCTATTAATAAACAGAATGGTTCATTAATAGGATGAGATTAA
GGAGATAATGAGATCCAACCTTTCGTTAATCTTCTGTAGGTAATGGTTTG
GTGGATTTCAAAGAGTTCATTAATCTGATGGATAATAATTGTCTGGTACA
AAGTATGGATGAGGAGATGCAACATCTCTTCCAAATGATCGATAAGAACA
ATGATGGTTACATTACCGAGAAAGAAATCAAAGCCATGTTGAAAGGAATG
GGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGATCAAAGAAGCTGA
CCAAAATAAAGATGGAAAGATCAGTTTCAATGGTAAATGCTTTACTCACT
TTAGAAATTCCACAAAAATCCCTTGTGTTGTCCTTAATATCAAATTGAAA
ATAGCAATAATGGGGGGAAAAAAAAACGATTAGTATCGCAATGGTGTATG
CAAGAAAGTTTTGGTGTATGTAGAATATCTATTCCATCAATCTAATCAAA
CAAAACTTTTTATCTTGTTTAGAATTCAAGACTATGGTTCAAAATGGTAA
CTACCTGATATGAGAAGGGGTGCACGCCAAAACAACAAGCTATGGCGTAT
CGCGTCCTTGAGATATCACTATATCGTTCGCCTGCCGTGACAAAAAAGAT
TACATGTAGAACGCGAACCGATTTGACTGGAGGACCACGAAAGTTTGCTG
CTGTCAGAATCTATACTCAATGTCAATATTTGTTGAAAATGCAAGATATT
CGGGAGAGATATAATGAAATAAAGATGGCAGCTTCTGATAAAAAGACGCA
TAATTAGAGAGATAAGGAACATTAAAAGGACATGAGTCTCCTCACATGAT
AGAAATGAATCCACATATAGACATTCAATCAATTCAAATTGTATATAACT
TGTAAATATGTTCTTGTATTTAGTAAAACAAATTGTATTGTCTAATTTTG
TTGACAAAAAAATTCTACACATTGAAGGTAGATTGAGCCTAAAGATTCTT
AAATAATTTTTTGGCAGACTGACTTTTGGTCAAAGGTCTTCTTGACCCTT
CCTGGCACCTCAATTTCACCAAAATTCTCATGTCCTCAATCCCAATACTT
TTATTCAGGAATGCTGACTTTAATCCCAAACGACACTTGTTAAATATACA
TTTTTATTCCCAAGCACTAGTCTTGGAAGTTCGAACAGAAAAACAATACT
TTGATGTCAGAAAAGAACAGTATTTGGTGATTCGCTAAATCTAAGTCAAT
CAGGGCATGGCAGGCGTACCAAAAATACCTAAATATAGAAGAACACGGCA
TTAAATTCACTCACAAATTGTCGCAAGATTCCTCATTATAAAATGGAGTG
TTAAAAAAATGCTTTCAACTAGTTTAAAGTTCAAGGATTTGGACTTAA

Coding sequence (CDS) from alignment at sc0000512:157329..167276-

>TCONS_00024892 ID=TCONS_00024892|Name=TCONS_00024892|organism=Clytia hemisphaerica|type=CDS|length=4095bp|location=Sequence derived from alignment at sc0000512:157329..167276- (Clytia hemisphaerica)
AATTCAAGACTATGGTTCAAAATGGTAACTACCTGATATGAGTAATGGTT
TGGTGGATTTCAAAGAGTTCATTAATCTGATGGATAATAATTGTCTGGTA
CAAAGTATGGATGAGGAGATGCAACATCTCTTCCAAATGATCGATAAGAA
CAATGATGGTTACATTACCGAGAAAGAAATCAAAGCCATGTTGAAAGGAA
TGGGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGATCAAAGAAGCT
GACCAAAATAAAGATGGAAAGATCAGTTTCAATGATCATTAAAGCTGTTG
ACATCGATGAATTGAAGAGTGCGTTTGCTTCATTCGATAAAAATGACGAT
GGGTTTATTTCGAAAGAAGAACTTTCTGAAGCCATGGCTTGTTTGGGTCA
CAAAATCTCCAATGAAGAATTAGATGACGCTCAACCAATCACACCTCAAG
ACATGAACGCTAGCGTGCAAGAGATTAAACGACACTACTCACAACACACC
GGACAACAAGATGCATATTCTCGGACACTTTGTTGGCAAACAATACAACG
CCATTGTGTCATCATCAACTGGGAGACACAAGATGAATTCAAGACTATGG
TTCAAAATGGTAACTACCTGATATGAGTAATGGTTTGGTGGATTTCAAAG
AGTTCATTAATCTGATGGATAATAATTGTCTGGTACAAAGTATGGATGAG
GAGATGCAACATCTCTTCCAAATGATCGATAAGAACAATGATGGTTACAT
TACCGAGAAAGAAATCAAAGCCATGTTGAAAGGAATGGGAGAAAAAGTCC
GCAAGAAGGACATCAGGAAAATGATCAAAGAAGCTGACCAAAATAAAGAT
GGAAAGATCAGTTTCAATGATCATTAAAGCTGTTGACATCGATGAATTGA
AGAGTGCGTTTGCTTCATTCGATAAAAATGACGATGGGTTTATTTCGAAA
GAAGAACTTTCTGAAGCCATGGCTTGTTTGGGTCACAAAATCTCCAATGA
AGAATTAGATGACGCTCAACCAATCACACCTCAAGACATGAACGCTAGCG
TGCAAGAGATTAAACGACACTACTCACAACACACCGGACAACAAGATGCA
TATTCTCGGACACTTTGTTGGCAAACAATACAACGCCATTGTGTCATCAT
CAACTGGGAGACACAAGATGAATTCAAGACTATGGTTCAAAATGGTAACT
ACCTGATATGAGTAATGGTTTGGTGGATTTCAAAGAGTTCATTAATCTGA
TGGATAATAATTGTCTGGTACAAAGTATGGATGAGGAGATGCAACATCTC
TTCCAAATGATCGATAAGAACAATGATGGTTACATTACCGAGAAAGAAAT
CAAAGCCATGTTGAAAGGAATGGGAGAAAAAGTCCGCAAGAAGGACATCA
GGAAAATGATCAAAGAAGCTGACCAAAATAAAGATGGAAAGATCAGTTTC
AATGATCATTAAAGCTGTTGACATCGATGAATTGAAGAGTGCGTTTGCTT
CATTCGATAAAAATGACGATGGGTTTATTTCGAAAGAAGAACTTTCTGAA
GCCATGGCTTGTTTGGGTCACAAAATCTCCAATGAAGAATTAGATGACGC
TCAACCAATCACACCTCAAGACATGAACGCTAGCGTGCAAGAGATTAAAC
GACACTACTCACAACACACCGGACAACAAGATGCATATTCTCGGACACTT
TGTTGGCAAACAATACAACGCCATTGTGTCATCATCAACTGGGAGACACA
AGATGAATTCAAGACTATGGTTCAAAATGGTAACTACCTGATATGAGTAA
TGGTTTGGTGGATTTCAAAGAGTTCATTAATCTGATGGATAATAATTGTC
TGGTACAAAGTATGGATGAGGAGATGCAACATCTCTTCCAAATGATCGAT
AAGAACAATGATGGTTACATTACCGAGAAAGAAATCAAAGCCATGTTGAA
AGGAATGGGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGATCAAAG
AAGCTGACCAAAATAAAGATGGAAAGATCAGTTTCAATGATCATTAAAGC
TGTTGACATCGATGAATTGAAGAGTGCGTTTGCTTCATTCGATAAAAATG
ACGATGGGTTTATTTCGAAAGAAGAACTTTCTGAAGCCATGGCTTGTTTG
GGTCACAAAATCTCCAATGAAGAATTAGATGACGCTCAACCAATCACACC
TCAAGACATGAACGCTAGCGTGCAAGAGATTAAACGACACTACTCACAAC
ACACCGGACAACAAGATGCATATTCTCGGACACTTTGTTGGCAAACAATA
CAACGCCATTGTGTCATCATCAACTGGGAGACACAAGATGAATTCAAGAC
TATGGTTCAAAATGGTAACTACCTGATATGAGTAATGGTTTGGTGGATTT
CAAAGAGTTCATTAATCTGATGGATAATAATTGTCTGGTACAAAGTATGG
ATGAGGAGATGCAACATCTCTTCCAAATGATCGATAAGAACAATGATGGT
TACATTACCGAGAAAGAAATCAAAGCCATGTTGAAAGGAATGGGAGAAAA
AGTCCGCAAGAAGGACATCAGGAAAATGATCAAAGAAGCTGACCAAAATA
AAGATGGAAAGATCAGTTTCAATGATCATTAAAGCTGTTGACATCGATGA
ATTGAAGAGTGCGTTTGCTTCATTCGATAAAAATGACGATGGGTTTATTT
CGAAAGAAGAACTTTCTGAAGCCATGGCTTGTTTGGGTCACAAAATCTCC
AATGAAGAATTAGATGACGCTCAACCAATCACACCTCAAGACATGAACGC
TAGCGTGCAAGAGATTAAACGACACTACTCACAACACACCGGACAACAAG
ATGCATATTCTCGGACACTTTGTTGGCAAACAATACAACGCCATTGTGTC
ATCATCAACTGGGAGACACAAGATGAATTCAAGACTATGGTTCAAAATGG
TAACTACCTGATATGAGTAATGGTTTGGTGGATTTCAAAGAGTTCATTAA
TCTGATGGATAATAATTGTCTGGTACAAAGTATGGATGAGGAGATGCAAC
ATCTCTTCCAAATGATCGATAAGAACAATGATGGTTACATTACCGAGAAA
GAAATCAAAGCCATGTTGAAAGGAATGGGAGAAAAAGTCCGCAAGAAGGA
CATCAGGAAAATGATCAAAGAAGCTGACCAAAATAAAGATGGAAAGATCA
GTTTCAATGATCATTAAAGCTGTTGACATCGATGAATTGAAGAGTGCGTT
TGCTTCATTCGATAAAAATGACGATGGGTTTATTTCGAAAGAAGAACTTT
CTGAAGCCATGGCTTGTTTGGGTCACAAAATCTCCAATGAAGAATTAGAT
GACGCTCAACCAATCACACCTCAAGACATGAACGCTAGCGTGCAAGAGAT
TAAACGACACTACTCACAACACACCGGACAACAAGATGCATATTCTCGGA
CACTTTGTTGGCAAACAATACAACGCCATTGTGTCATCATCAACTGGGAG
ACACAAGATGAATTCAAGACTATGGTTCAAAATGGTAACTACCTGATATG
AGTAATGGTTTGGTGGATTTCAAAGAGTTCATTAATCTGATGGATAATAA
TTGTCTGGTACAAAGTATGGATGAGGAGATGCAACATCTCTTCCAAATGA
TCGATAAGAACAATGATGGTTACATTACCGAGAAAGAAATCAAAGCCATG
TTGAAAGGAATGGGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGAT
CAAAGAAGCTGACCAAAATAAAGATGGAAAGATCAGTTTCAATGATCATT
AAAGCTGTTGACATCGATGAATTGAAGAGTGCGTTTGCTTCATTCGATAA
AAATGACGATGGGTTTATTTCGAAAGAAGAACTTTCTGAAGCCATGGCTT
GTTTGGGTCACAAAATCTCCAATGAAGAATTAGATGACGCTCAACCAATC
ACACCTCAAGACATGAACGCTAGCGTGCAAGAGATTAAACGACACTACTC
ACAACACACCGGACAACAAGATGCATATTCTCGGACACTTTGTTGGCAAA
CAATACAACGCCATTGTGTCATCATCAACTGGGAGACACAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013987XLOC_013987Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024892-proteinTCONS_00024892-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024892-exon-sc0000512-1575043694:167249..167276TCONS_00024892-exon-sc0000512-1575043694:167249..167276Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1575043694:162635..162733TCONS_00024892-exon-sc0000512-1575043694:162635..162733Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1575043694:160485..160515TCONS_00024892-exon-sc0000512-1575043694:160485..160515Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1575043694:160133..160251TCONS_00024892-exon-sc0000512-1575043694:160133..160251Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1575043694:158994..159018TCONS_00024892-exon-sc0000512-1575043694:158994..159018Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1575043694:158395..158637TCONS_00024892-exon-sc0000512-1575043694:158395..158637Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1575043694:157329..158204TCONS_00024892-exon-sc0000512-1575043694:157329..158204Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1510915933:167249..167276TCONS_00024892-exon-sc0000512-1510915933:167249..167276Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1510915933:162635..162733TCONS_00024892-exon-sc0000512-1510915933:162635..162733Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1510915933:160485..160515TCONS_00024892-exon-sc0000512-1510915933:160485..160515Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1510915933:160133..160251TCONS_00024892-exon-sc0000512-1510915933:160133..160251Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1510915933:158994..159018TCONS_00024892-exon-sc0000512-1510915933:158994..159018Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1510915933:158395..158637TCONS_00024892-exon-sc0000512-1510915933:158395..158637Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1510915933:157329..158204TCONS_00024892-exon-sc0000512-1510915933:157329..158204Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1491911889:167249..167276TCONS_00024892-exon-sc0000512-1491911889:167249..167276Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1491911889:162635..162733TCONS_00024892-exon-sc0000512-1491911889:162635..162733Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1491911889:160485..160515TCONS_00024892-exon-sc0000512-1491911889:160485..160515Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1491911889:160133..160251TCONS_00024892-exon-sc0000512-1491911889:160133..160251Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1491911889:158994..159018TCONS_00024892-exon-sc0000512-1491911889:158994..159018Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1491911889:158395..158637TCONS_00024892-exon-sc0000512-1491911889:158395..158637Clytia hemisphaericaexon
TCONS_00024892-exon-sc0000512-1491911889:157329..158204TCONS_00024892-exon-sc0000512-1491911889:157329..158204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:157329..167276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00325394	1.56358	0	0.00109526	0	0	0.00379479	0	2.24301e-08	0.949324	0	0.0218887	1.35592	0.00984207	0.879137	3.33853	0.142327	2.67223	4.57444	7.68558	1.25183	1.86769	0.278676	0.407694	0	6.46514e-10	0.0487493	7.69518	0.834807	0.00126951
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00024892 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.166e-29
Identity = 54/146 (36.99%), Postives = 92/146 (63.01%), Query Frame = 2 
Query:  125 VAQPITPQDMNELKSAFASFDKNDDGFISKEELSEAMACLGHKISNEELDDIIKAVDIDGNGLVDFKEFINLMDNNCLVQSMDEEMQHLFQMIDKNNDGYITEKEIKAMLKGMGEKVRKKDIRKMIKEADQNKDGKISFNEFKTMV 562
            +A  +T + + E K AF+ FDK+ DG I+ +EL   M  LG   +  EL D+I  VD DGNG +DF EF+ +M         +EE++  F++ DK+ +GYI+  E++ ++  +GEK+  +++ +MI+EAD + DG++++ EF  M+
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00024892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM39.166e-2936.99Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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