TCONS_00024790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024790
Unique NameTCONS_00024790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024790 ID=TCONS_00024790|Name=TCONS_00024790|organism=Clytia hemisphaerica|type=transcript|length=295bp
TGTCAAGTTTCAACAAGGGGTTTTTTAAGTATAGATTGTTTTTCCAGAGT
GTTATATGTTTATTCGCGTTTAAGTTTTCGTGTTTCATGTATATAAGTTT
ACAAAGTTTTCAGCTCTTCTTTTCGATCCCCCACGGTTTCTCTCTAGCAG
TTCCAttaggatttttattttcattaggatgtatattttatgtttttcga
TTCTAGGCTTTGGTACGGCTCCTACTACATGAAAGATATCAATCTGTCTC
GAAATCGAGATTTCtagttgttcttttttgttttgtgtcTCAGGC
Run BLAST on NCBI

transcript from alignment at sc0000510:196390..196684-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024790 ID=TCONS_00024790|Name=TCONS_00024790|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0000510:196390..196684- (Clytia hemisphaerica)
TGTCAAGTTTCAACAAGGGGTTTTTTAAGTATAGATTGTTTTTCCAGAGT
GTTATATGTTTATTCGCGTTTAAGTTTTCGTGTTTCATGTATATAAGTTT
ACAAAGTTTTCAGCTCTTCTTTTCGATCCCCCACGGTTTCTCTCTAGCAG
TTCCATTAGGATTTTTATTTTCATTAGGATGTATATTTTATGTTTTTCGA
TTCTAGGCTTTGGTACGGCTCCTACTACATGAAAGATATCAATCTGTCTC
GAAATCGAGATTTCTAGTTGTTCTTTTTTGTTTTGTGTCTCAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013925XLOC_013925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024790-exon-sc0000510-1575043694:196390..196684TCONS_00024790-exon-sc0000510-1575043694:196390..196684Clytia hemisphaericaexon
TCONS_00024790-exon-sc0000510-1510915933:196390..196684TCONS_00024790-exon-sc0000510-1510915933:196390..196684Clytia hemisphaericaexon
TCONS_00024790-exon-sc0000510-1491911889:196390..196684TCONS_00024790-exon-sc0000510-1491911889:196390..196684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000510supercontigsc0000510:196390..196684 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.78518	5.8226	1.07608	2.53877	0.180027	0	0	0	1.16226	1.21408	2.25346	0.454728	2.74403	0	1.11993	0.591995	0	0	1.31244	0.842249	0	0	0.609714	0	0	0.0969889	1.17319	1.06562	0.786983	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top