TCONS_00024740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024740
Unique NameTCONS_00024740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024740 ID=TCONS_00024740|Name=TCONS_00024740|organism=Clytia hemisphaerica|type=transcript|length=685bp
tcacttttgaaaaaaaattgacaggaTTCAGGATATGTATTCACTGTAAT
GACTCCAGTAATAATTATGGATCAGAAATTACattacttttcttttcttt
tctacttTTGCATCGTTTGACGCACAATGACTCAGTGCAAAGCTTTTGTT
TTGAAGACATTGATGTGATCAGTCTTGCCAGGTACTGCATATAATGACAC
TTATTGTTTTTTGTATTTCAggaaattcttaaaatattgGTGATGGCAAA
ACATCATCCTGATCTTATCTTTTGTCGCAAACAACCTGGAGTTGCAATTG
GACGGCTTTgtgaaaaagATGATGGTAAATGTGTGATCTGTGATTCGTAC
GTTCGACCGGCTACACTTGTTCGGATTTGTGATGAGTGCAATTACGGTTC
ATACCAAGGGCGTTGTGTGATTTGTGGCGGGCCAGGTGTTTCAGATGCTT
ATTATTGTCGTGAATGTACAATCCAAGAAAAAGATcgtGACGGATGTCCA
AAAATTGTGAACTTGGGAAGCTCAAAAACAGATTTATTCTATGAACGAAA
GAAATATGGATTTAAGAAACGCTAACACAAGGGATAATAGACTTTTTAAC
TTTGTAACAtagcattttttttattttaaggaaACTCTAAACATGCTATC
TTTCTCTCTCCTTTGTGTTTCTTTCTCTATGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000509:32791..34890-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024740 ID=TCONS_00024740|Name=TCONS_00024740|organism=Clytia hemisphaerica|type=transcript|length=2100bp|location=Sequence derived from alignment at sc0000509:32791..34890- (Clytia hemisphaerica)
TCACTTTTGAAAAAAAATTGACAGGATTCAGGATATGTATTCACTGTAAT
GACTCCAGTAATAATTATGGATCAGAAATTACATTACTTTTCTTTTCTTT
TCTACTTTTGCATCGTTTGACGCACAATGACTCAGTGCAAAGCTTTTGTT
TTGAAGACATTGATGTGATCAGTCTTGCCAGGTACTGCATATAATGACAC
TTATTGTTTTTTGTATTTCAGGAAATTCTTAAAATATTGGTGATGGCAAA
ACATCATCCTGATCTTATCTTTTGTCGCAAACAACCTGGAGTTGGTAAGA
ACCCTGGTTACAAAATCCCATTCCTTTTGTTTTGGTTTGTGCAGATCTAT
TCATGATGCCAATGGAGAAATGACATCAATACAGACACTAATACAGAGCT
TGATGGCTGACAGATATGTCACATACTTTAGAAATCATCAACCCTGTCAG
ATACAATTCTCAAAATTTAATGACTTTACGATTTTTCTTCCTTGCCAGAA
ATTTTTGGTTGCTGAAACCATGTTACTGTATCCAAATTTGCTTAGGTGAC
ACCCCTCCCGCCGTTGATTTTAAGTTATGGATATTTTACATTTAAGTTTT
TCAAACACACGTTTAAATAAGTTAGGGAATTCCAAACATTCTAGTACAAA
ATCACATACTATACTAATCTAAATAACTCTTTTTCATTATAGCAATTGGA
CGGCTTTGTGAAAAAGGTTTGTTTTTATTGTGCCAGTAAATATTTCAAAA
GATTCTTCTCTAAGACCTTTATTCAACTAAGCTGAATGACCAAAATTATA
CTACAACACCTGCTCTTCTTTCAAGCTTTATTTTGCTTTCCTACTTCAAC
TCGGTTATCAATTCCCTATGTATATTTATTATTGATGCTTCTAACTTAAT
ATTCCCCGTTTTAATTTGATTAACTTCTAGATGATGGTAAATGTGTGATC
TGTGATTCGTACGTTCGACCGGCTACACTTGTTCGGATTTGTGATGAGTG
CAATTACGGTTCATACCAAGGGCGTTGTGTGATTTGTGGCGGGCCAGGTG
TTTCAGATGCTTATTATTGTCGTGAATGTACAATCCAAGAAAAAGATGTA
AGCCTTTTTTATAAAACATAACAACAAGCTCAGAATTAGTTCTTTTGGGC
CTTCTTTTTAGAACAATGGAGCCTGGATTGCAGGAAGATGTTTGTTTCAT
GGAAAAAAATTCCTTTTTCTTTTTTTGTTGCCCGGGGTAGGCAAAATTTG
GAGCGGGAACGTGCTGCTGATCAGGGTCCCTTTTTTAGGCTCTGAAGATA
TCTGACAGGGTCCCAAATTTACTAATTCAACATTCATACCTGATAGAGTT
GTCTTTTGGTTATTTTGGACAATTTTCAGGGTGAAAATTTGAAAATTTTT
CAATCTTTTGTCTACATTTCGTCATTTTTGCCACTTTTCAAGGTGAAAAT
GTGGGAATTTTTTTCAATTTTCCTTCCGACAGGGTTCCGAATTTACCAAT
TAAATTTATACCTGACAGGTTCCCTTTTTCAAACTCCAGCGGCACGTCCT
CGTCGGCCGTCAAGGTCAGTGCCCTCTCCCCGGGGTTTGTTGTAATTTCT
TGCTTTTCCATTAATATCGNTTATACCTGACAGGGTCCCTTTTTCAAACT
CCAGCGGCACGTCCCCGTCGGCCGTCAAGGTCAGTGCCCCCTCCCTGGGG
TTTGTTGTAATTTCTTGCTTTTTCATTAATATCATGATTTAGTATAGACT
ATCCTACCTATCTAAATTGTAAATCACATGGAGGGGTATAAGGGTAGGTG
TTAGCCTACTGCACTACTGGTACAAACGACGTACAAACGACGTACAAACG
ACATACAACTATTGACATATTGTTTATTTAAGTTTCTTTTCAATTTTTAG
CGTGACGGATGTCCAAAAATTGTGAACTTGGGAAGCTCAAAAACAGATTT
ATTCTATGAACGAAAGAAATATGGATTTAAGAAACGCTAACACAAGGGAT
AATAGACTTTTTAACTTTGTAACATAGCATTTTTTTTATTTTAAGGAAAC
TCTAAACATGCTATCTTTCTCTCTCCTTTGTGTTTCTTTCTCTATGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013896XLOC_013896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024740-exon-sc0000509-1575043694:34597..34890TCONS_00024740-exon-sc0000509-1575043694:34597..34890Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1575043694:34175..34198TCONS_00024740-exon-sc0000509-1575043694:34175..34198Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1575043694:33794..33960TCONS_00024740-exon-sc0000509-1575043694:33794..33960Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1575043694:32791..32990TCONS_00024740-exon-sc0000509-1575043694:32791..32990Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1510915933:34597..34890TCONS_00024740-exon-sc0000509-1510915933:34597..34890Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1510915933:34175..34198TCONS_00024740-exon-sc0000509-1510915933:34175..34198Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1510915933:33794..33960TCONS_00024740-exon-sc0000509-1510915933:33794..33960Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1510915933:32791..32990TCONS_00024740-exon-sc0000509-1510915933:32791..32990Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1491911889:34597..34890TCONS_00024740-exon-sc0000509-1491911889:34597..34890Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1491911889:34175..34198TCONS_00024740-exon-sc0000509-1491911889:34175..34198Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1491911889:33794..33960TCONS_00024740-exon-sc0000509-1491911889:33794..33960Clytia hemisphaericaexon
TCONS_00024740-exon-sc0000509-1491911889:32791..32990TCONS_00024740-exon-sc0000509-1491911889:32791..32990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000509supercontigsc0000509:32791..34890 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.6636	60.7617	64.6429	63.8209	95.649	71.8323	105.023	104.71	104.306	85.3066	86.0379	77.4482	59.8801	77.5267	59.2936	62.9953	63.0016	65.3775	33.5144	25.8214	53.0471	51.9864	74.7759	63.0874	94.8076	114.627	56.9252	56.2802	45.8301	45.6823
Blast
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BLAST of TCONS_00024740 vs. Swiss-Prot (Human)
Match: PHF5A (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.055e-70
Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 3 
Query:  243 MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPATLVRICDECNYGSYQGRCVICGGPGVSDAYYCRECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 572
            MAKHHPDLIFCRKQ GVAIGRLCEK DGKCVICDSYVRP TLVRICDECNYGSYQGRCVICGGPGVSDAYYC+ECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
The following BLAST results are available for this feature:
BLAST of TCONS_00024740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHF5A2.055e-7096.36PHD finger-like domain-containing protein 5A OS=Ho... [more]
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