TCONS_00024727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024727
Unique NameTCONS_00024727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024727 ID=TCONS_00024727|Name=TCONS_00024727|organism=Clytia hemisphaerica|type=transcript|length=2888bp
TTCGGTTCATTGGTAGAATTCGGAAGCTCTGCtttattctgaattttttg
ccGATGGTGGATTTTGTTAATTTGAACCTCGTCGATTGGTCAAAAGTTTC
CATAACTCAATTCTGATTGGTTCAACATTTCCGATCCTTTGCTGTGATTG
GTGGATATTTTAAGATGATGGCGACTTTACAAATTCTTCTTCCAGTAGCA
GCACATGCTCACGCTGCTACGCCCGCCATCTTTAATAAAGTTGCCCAGtt
ggaaagaaaaaagACCGGAGACTTTTTAACGAAAAAGATACGCGCACGAC
CTAGTCGACAACAGTTAATACAAAGACACATCCTCTCTGCAGATTCGCGT
GTCGATCCGTCCCTTCTGGAAAAGGTTGGCAAACTCGAACGTCAACGCAT
CGCTGATCAACTTAACGAGCGTCTTCTTCAACGTCCTGGTCCCATCGAGC
TTATACAAGATCGAATCCTTCCTGTCGAATCACCCATACAAAATGCTATC
GACCAAGGCAGTGTAGACTATCAACAGACCGTTTCCCCCGCTTCCTCACA
CGCGGATTCGCCTTCCGTCTCCGAATTAGAGACAGGAATTCACACTTTGA
ATTGTACTTCACCTTCACCGCCCCCTCCGCCACATTCAACGCCACAAGTT
CCGCCCTTACCGAACAATTTCTCTGATGTATCCTTCAAAAATCAACTTAA
AACCGTTTCCGAATCGGGGAAAACTTCAAACCCGTTATTCGTTTCGGATT
CGTTTAAATCTGCACACTCTATATCACTCTCACAACGTGAAAACGAACGT
CTCGTCAAATCGGTCAATAAAAAAACACGTCAACAGAAAccgaaagtaaa
aaaattgaaattccacGAATGTCTACCGGGGTCCGGTACCGTGAAAAAAG
TGGAGGCGGAAAGTGAGGTCGTAGATGAGCGATACCAGAGACTTTTGGAG
CAACAGACTTTATATTTACGCTTACAGGTGATGCAACAGAATGCTGTTAT
GAACGCTCTGCAGGGCAACCCAGAATCCATGGATCAAGTGAACGAAGAAA
TTGAACACATGatgcaaaaagaaaataataaaacgaACGATACCAATATT
AAATCAATAGACGGTAAAAAATTGGACGATTTACGAGTTGTCGATTTAAG
AGCGCAACTCAAACATCGTGGACTCTTAGTATCGGGGGCAAAAGCCAAAT
TGATTGAAAGACTTCTAGCGTTTGAAGAAGGGAAGTCAACTCCCGCCGAT
TTCGCTTATTCGGGAAGTAATTTATCTCACGATGCCAGTATTGTGGCTAG
TAAGACCACGTCCACTATGGTCCCTTCAACCACAGTGATGCAAGTAGCAA
CTTACGCTACAAACAGTGGTCAAACATACCAAGTGGTACAAACCGTCCCA
CAATCCTCTCCCAGCATCATGCAATACCAGGTCGTCCCTGCTACCTCTTC
TTCCGACGAGCAACTCTCTAGACTGGATCAAGTCAACACGGTTCCTGTGA
TGGCCCTCACACAGCCTAGTGTAATGTCAGTTCAAGAGAGAGTAAGCGAC
AAGCCACTTCGCGCCCAAGCAACGCCCTCACCATCGCACATCCAATTCCA
TATCACTCCCCCGCCTCAACCACAAACGCCCACCATCGTTCTCCACTCGG
GGCCGCCTCTGCAACAAGCTTCCCTCTACCAACGACAGCGACAACAAAAg
gtcaaagttcaaaaattacCTGTCATCAGTCAAGGCCAGTGTTTCGATCT
TTCGGAAAGCAACTCGCAACCGCTCGGCCTCTCACAGTCCGTACCACCCA
TGCAACTGAACAATAATTACTTGATGGAAGCGAACCAATGTAATCTCAAC
TACAACACATCTCTCAGTAATTCTTCCCTTCACACAGACGTCAATGCAGA
CAACGACCTCTTTAACAACCCCTCAACGCAATTTCGTGGTCGTGCATCCA
GTGAACCGGCTTCTCAATTGAAGAAAATGCATCCACTGAAATCAGATAGT
ACTAAATCAGTGTTTAGCCACCAACAACAAGACCTTTCACTTCAATTCCC
TAAAATGTCACCCTCTCCGTCACTGAGCCTCAAAGATCATCACCAACTAC
CCAATTCCATCAAGTCTGAGAATATGGATGACATTATGGACATTATTGGA
GAACTCTCCTCGTCACCAGGCCTTATGAAAGAACCGCCACCTCCTTACAA
CTCGTGTTACTATGACAACAAGAAATTACTGACGGAGCAAAAACCGTTCA
ACACTCCGGACGCGCACGATTTGAACCTTTTATCAGGTTCGCCTTCACAG
AACTTTTTGAACAATTCTTTTTATAACACGGCTGGTTTTAACACCTCTTC
CTCCACCGGAAGCATCCCGCAACAAACCTCACCTACGCCTTTCCGTGGAA
CCTCTCCCTCACATTTCATGAACACGGCGGCGCTTTCACCCACCAACGCC
ACCACGGATGACCCAATGGAGTTGGACCGCTTTCCCTCACCAAACATGAT
GGCGTCCAACAATTCTTTAAACTGGCTCGACCTGAATATGGAACCAAATT
CTCCTAATATGAATTTTCAGACAATAAAAGACAATAATACTGCGAATACC
ACAAATTCAATGAATATGGATCTTCAGAATGGGATGTTTAGCAACGAGCT
GAACAACCAACAACAAACTTTATATAATAATCAAAACAGACAATCGCAGA
ATTCTCTGTTTTACGGTAGCAGTCCTCGACAGCAAGATGgttttatttca
ctttttgatctCGAGGGAGGCGAATACTAACTTAACAATTTTTCTTCAca
cgcaaaaaatcaaaaaattctgtTCTTTCTTTCTCATGTAATGAAAATGt
tgtataaattttttttaatttaatatttttttctcaag
Run BLAST on NCBI

transcript from alignment at sc0000509:138648..152406+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024727 ID=TCONS_00024727|Name=TCONS_00024727|organism=Clytia hemisphaerica|type=transcript|length=13759bp|location=Sequence derived from alignment at sc0000509:138648..152406+ (Clytia hemisphaerica)
TTCGGTTCATTGGTAGAATTCGGAAGCTCTGCtttattctgaattttttg
ccGATGGTGGATTTTGTTAATTTGAACCTCGTCGATTGGTCAAAAGTTTC
CATAACTCAATTCTGATTGGTTCAACATTTCCGATCCTTTGCTGTGATTG
GTGGATATTTTAAGATGATGGCGACTTTACAAATTCTTCTTCCAGTAGCA
GGTATGGTATGAAGCCATCATAGCATTTCTCTGCTAATTGTCTTTGTTAA
GATGAATTAAAGTATTTTCCATTGTACTTTGGGCAAAGTCATCACACTGG
TCAGAGAGACCTGACttccttcttcactttttgagCTAACCATTTGAAAC
AGTTTGACTCATTAAACCTCTCAGCCGAGTAGGATTTAATTTAGCCAGGT
TTGTCCAAAGATTTGTAACTTTACCAAAATCCATCATTATGGAAGAAAAA
GTTCGAATTTGTAAAGAATTCGTTTTCAGTAATGGAGGTACTTACGCAAT
TCAGTCAATCTACAAACATCAAGAGAAAGGAATGAGTTTCAAAAAGTGTA
TCTTTTTAGTTTGAAGAATGACTGACTAGTGGACATTGAATCTCTTCTAT
ATTGTAAACTTCTCAATAAGATATATTGGTTCTGTAATCAAGATCTGTCT
TTAGGAAATGttagttttattgttatatCCTCTGAGCTTCGAAATATTTG
ATCTAAATTTATATCTCATATTCCTTCCTTTCCAAATATTGAGAAGGTTC
AGGCATTTTCAGAAATCATTGTTGACAGGTTTTGCATAACGTCTGATTGA
TGGGTGGTGATTCTTTGGAGAGAATGAACATCGAGATGACTTCCACCCTG
TATTATTACTATCTTGaaagttatgttcaatttttgaatttctggTGTTG
TCATTTTCGTGGTTTTCACTTTGTCATAATCTCAAGTTGTGTAGGATAGT
CTGAGTTATTCTTTTGAATGAGGCTGATCACACACAAAAAATGTGGAATG
TTTCAGATTATACTTATGTTCTTAAGTTGGCCAAAATTGAGACTTTTGTT
CTGATATAAAATTGATCTTTATAAATTAATATTTTGTTACTGGcctaaat
atgacgtcatctttatTTACCTTTTATGCTGACTTCGCAAATCTCTTGCA
CAGTGACGTCAGTGGACCACGTTTAATCTCTTCATCTCAAATTAAGACGG
TTTGTCAAGGGAAGACATTGTTTCTAGGGAGGGAGAATTTCTTGGCACAG
ATTTTCTACACACAAGAATTCGTAGAGCAATCCACTTAACTACATAAATA
GCGAACTACTTGTCTGTTACAACGAACAACTTTCGTCTTTACTATCAATT
TCTTTTAATCAGGAAAATCACTTCTTTAAGGCTTTCATTCGAAATTTATG
TTTGAGCCATTTCATGACCGGGTCATTCAGTAATCTGTTTTATTACAACA
TATGTTACGATCTAACATGGCATGTCTTGTTTATTTTCGTCGCATTCATT
GGCTATTCCAGAAGAAATttgtaacccccccccctatgttgaggttttgc
cctggatttttttttacaattttcaggACCCCTTTGGgtgttttgttcat
ttttttggaccaccctggatttttagtCTCAAAAAATCGGACCCGATGGA
TTTTCTATTTTCCAGACCActctggacgtcacacctcctcaacatagggg
gtacagacaattttttattcaatttcagACTTACCCCAAATTAAGACGTC
TAATAAAAAGCCGTGTAATATAATGATTTGAATGCGTTCACCGAgctgag
tttaaaaaaaaaacatgttttcaaTCCAATAAGAATGTCAAATTGATGAA
ATATTATATAATTCCTAAGAGCATTTATAAAGTCAAGCGTTCTCTTTTTG
TTTAGCATTCTGGTCGTTTACAGTAAAAATTGCCGCTTTAATTAAAGTGT
GAAGTTCTCAAATCTGATTGTGAGTGTCAAAACGAAAGTTGATTGAAATC
AGGCTCCCGTGTTGCGATAACGTCCGCCAGACTTTGGTTCCATGTTGAGG
TGAATTGTGgttagaatgttttttttttggtcctCCATGTCTTTTTTTAA
CATTGTGGAGATAATAATTAAGGAGATGAATGTTTGACTTTTAAGTGTTT
TCTTACATGGAGAGCTAATGAGTAAAAAATAAACATCTTTATCTTAACAT
ATTCAGTATAAacaaatatgacgtcatcttatGCATCTATGACGTCACCA
TGTCATCGAATCAACAACCATTTTGaaataacagaaaaaaattcttcttt
ttcgcTTGAATTTTCCTTTGAGGTGCAAGCATGAAAAAGCTTGATAACGC
TTTTCGTTTCTTTTGCTTTATTTGGCGTTTCGGAGAAAAGATgacatcaa
atttctaaaaatacacacataaatttgtttgctgATGGACTCGTTGTagt
aaatacaaaaaaaaacgcgaaacaaaaagttttaaaatgttttaaaagat
tAGTATGTCGTGTATGTGCGAANTTTTGATTCTTCTTTTTCGCCTGAATT
TTCCTTTGAGGTGCAAGCATGAAAAAGCTTGAAAACGCTTTTCGTTTCTT
TTGCTTTATTTGGCGTTTCGGAGAAAAGAtgaaatcaaatttctaaaaat
acacacataaatttgtttgctgATGGACAACgcgaaacaaaaagttttaa
aatgttttaaaagattAGTATGTCGTGTATGTGTGAAGTGAAGTTTCATC
AAAAACTTTATGTCTTGTTATGTTGGACTGTTTGAAAGGAAGTCTGTTTG
AAATGTTTCCTCAACTTTGTGTGAAAAAGAGTACTCGTTTTACTTCCACA
CTTTTCTCATCGTTTATAACTTGGATGGTTCGTCGATAAGCCTAAGGGTA
ACGTCAGCCTTTGGGACTTTGCTTGTTTACTACCAGCTTTCTGATTAAGT
TTTATTTGGTAAAGAAAGGATGTGCGAATGAATTGGAAGAGTCTGTTGAC
TGGTAGGAAATGAGAGGGTGGTGTTTGGGAGGAGGGGCGCTGGCGCTTTT
ATACAGGGTCTGCTAGGTAAGTAAAGATTTTACAGATGAGTCAAGCAGAG
AGAGAAGTGTAGCGTTTGACTTTGCTTGTTTAATGCCAGCTTTTGGATTC
GGTTTTATTTTGTAAAGAAAGGATGTGCGAATGAATTTGAGAGACTGGTA
GGAAATGAGAGGGTGGTGTTTTGAGGGCAGGGGCGGTGGCGCTTTTATAC
AGGGTCTGCTAGGTAAGTAAAGATTTTACAGATGATCCAagcagagagag
agagagagaagtgTAGCGTTTGACTTTGCTTGTTTAATGCCAGCTTTTGG
ATTCGGTTTCATTTTGTAAAGGAGTCTGTTGATTGTTTTGGTAGTAAAAG
AGAAAGTGGTTTGTGGGGTCATACAAGGTCTGCTGGATAATTTAAGATTT
TACAGCCAGCCAAATTTTTATCGTTTGTCAAGGAAAACGCAAAATCTAAA
AACCTTCGATTTTGGTGctacaaaatgacaaaaacagcTTGAAGAACATA
TTTTAAGGAACTTGAAAGATCGATCTCAATCACAGGGCAGGTTTCCAGAT
ATAAGTTTAGTTTTGCATCGTCTGAAAAGACTGTATGCTCTTCAATGCAC
TCTCCACCTCTCACTGGATACAATTTATCTGTTGCGTTTGAGGATTCTTT
CTCGATCAATATTGACGGAAAAATGAATCTACTTAAGTATCCCATAAATC
ATTGCAAAGAGGAAGGAATATTTTGATCTCTGTTTTTCTCTCTTGTCTCG
ACTGacagaaaacgaaagtgaaagtcgTTTTCTCGCCTTCTTTTTTGATC
AAGCGAATCACACGCATCAACTATCATCAAATCGTTAACCTTCTTATCtc
aaataaacctctttaaagaTTACTGAAATATCTTATTATAAAGCGAACTT
AATTTTcagttcactgttaaacaaatTGCGTGCATTTTAAGTTTGATAAC
TTTTTTAACGTGTTTCGATAAGTTTCGATAAGTGCTTCTTAAAACCACTT
AACCTTTCGTTGAGaactttttcaagactttgtgCTAGATGCAGTGTTGA
AAGCTCTTCCAAAGTTCTCAGTGAAGTTTAATGGGAGGCTTCTCCGTCcc
aaaatttttcataattcatcaaaatttcaagaatacgtgctaatttgctg
tgtaaaatccatttccCGTCTCCGGCGAAAAACGTTCGTTTGACCaaata
ttaccgagtttatttATTGGAGGAtgtcgagggcgacggtaagtggattt
gatacaaaacaaagtcgatagttgatgtacggctctatatcgcctttgct
cacctaaacagacgacggtattttggtgtttttaccgtcgtcgagcaaat
tGGACGGCgatttggagacatgtcaactttgctttataccgtccccctcg
atttatctcgaatacataaacttgctattgACTCAGCTCACTGCTCAGAA
AAACATGACCCTGGGTGTACAAGCACCTTCTACGAAGACTAGGCTGTAAA
CTGAAAATATCACAAATAAAGATCTAATAGCCATGAAATAAGATGCTACA
AGGCCAGTGTGATTCGTTTTGTTTGAGCTTGTTTGCAGTCACCAGAAATT
CATGTGTGGATGTGCTCTTGAACTGATTTCGAGGTATGATTGACCAGTAG
TTTGTCGTTTAATTCTTTGCTCATGGCACCAAATCATTTCAATTCAAAAG
TTAATTGCCGACGCATCAATTGATATCGTTCATAATTACCTTTCTTGCTT
TGTTTCAAAGGCGAGAATAGAGAAAGCAAAttactcaaaaaaaaaagata
catTTTCTTCTCGGTAACATATGTTGTTGATATGAGAGTTTTTTGATTGA
ACGAGCTCGAACACGTATGTTGCAAGAAAGAAGATAGATCTGTTTTGTTT
GTTCGAAAGTGTCCgagaaaaaaatgttggatATCTTGCGTCCGGTCTGT
AAGTAACTTTTATCTCTTTGACTATATTTGGAAAGATTATATCTTTAACT
CCATCCGCAAAGACACACTATGGGATGTCATTTCCATATGGCTTGTGCAT
CCACCTTTACTTGCGACACCTGCTGACAACACTATAATGTATGCAGAGGA
GTTTGCAACTTTTGGACAAGTAACATCTCTTTtgttactttaatcggatt
aatttttgcaacattttcggatcagtattttgaaaactttatcGTGGATT
TCAATCTTGGCAAGTTCTcgatgacgtaatcttttatacgggaACAACCA
ATAAACACCGGGCGTTAGCCGCCATTCAAAACTGGCGGCAAACGCCCGAT
GCTTTTCAGGTCTTTCTGTATTAAAGATTAcgttgtcaatataaaaaatc
aGCCAGAAATTTGTGAAGAGTTGCCCAGTAAACGCTAAAAATAGCATATT
TACATTGTATTTTACGCTGGaaatctgattttgaaaatttaatacCCCGA
GTCGATGGTAAAAATTCGTGATAATGCGAAATAAAATCTAGCCAAAATTT
ATTCAACTAAAATAATGCAAGTCCATTGGTATTTATCGCTTAAATGGtaa
ctctctgtaattcgatttCGAGCTAATtaaaaatactttaatgggataaa
ctttcgcggggattaaattttgcggttgggcctatccgcgaaatttttga
atttcgcggggactttaTTTCGcaggtggcactattgggttacaatattt
tcacgattttgtgacttttccTGTCAAATcttgcatgttggttgttgaaa
tacacattatttgcgtctctttgatgcaagtaaccattcaaatagtattt
atttgacatgttttgagttttgtttagaaatatttcgcggatgaggccct
tccaaatttccattgggacttgtcgcgaaatctgtgaaatttcatccctg
cgaaagtttatcccataaAAGTAGTCAATTATTCGAATTGCAGACTGATT
TTGCGAGCTTTAGGAGTTTCGCTTTATTGTGGGTTACGGTTTAGATGCTA
CAAGCAATACTCTCAACTATTTTTTAAATGACCCAGTATCGCCTCTCTTT
TCTCTACAATTGCTGACCCCCAAAAAAAGAAGCTCTtgtttaactgaaac
aattaTGACGTAAACTGATGACGTATGAATGAAGAGAGAGATTCATCTCT
TCGTCATTTTACTCGGAGGTCATATCATCGCGCATCTTGTATTTCAAATT
TATGACTTTCAAATGAAAACATCACAAAAAAAGGTCAATTATGACAAAAG
AAGTCTTGTGGCCTACACGATTTTTTGGATGCACTTTTCTCTTACACAAA
ACTTGATCCATCCCTCAGTCATGTTTTTGCACTCTGTTTACATTCAATAA
CCTAAGGCAGTTCATTTAATCCTTCTACCGGATTGAATTTAAGTCAACAA
TAATGGCTTGTATGTCAATCTAATGCACCAACAATTCTACATATCTTATT
TATCTTATTATTCGCAAATATATCTGATATTCTCCAACCACGCTGAAACA
TGATACGGAAAAGTCTCCGTGGAGGAGTCCTCCTTGCCCCTAACACACTA
CTGAATGACGCTCCAAAGTCTCTCCTTCACAGTGTTTGACTTTCACTTCG
AGCTTTCAGTGTTGATTTAACAAGCTATAGCTtactttttaaagatattt
tcttcCCGTTTCTTACCTGCCGTCAACATTATTAACTTTTCTAAAGTATA
CCATTCTTTATAATGCAAAATGACTTTCGTTGTTTTTCCAGCACATGCTC
ACGCTGCTACGCCCGCCATCTTTAATAAAGTTGCCCAGttggaaagaaaa
aaggtaCGTGTAATTTTGACTTGTTTATGCTTTCTTGGAGCCTCACTTAC
GTACAGAGCAGAAAGTCTAGAACAGAAAATCTCAAATTATAAAAGGTATT
TTATGAAGGTTTTAGttagctgaaaaattaaaacaatccCTTCTCACGGA
CTCGGATTGGATTGATCGCCAGTTAAATAACCACACAAGTTTTGATTACA
GAAACTCAATTGCTAGGCTTTCTTCATTCTTTTAGACCGGAGACTTTTTA
ACGAAAAAGATACGCGCACGACCTAGTCGACAACAGTTAATACAAAGACA
CATCCTCTCTGCAGGTAAGCACCCCATTTTTTTTCGCTCAAATTATTTCA
GTGTCTTGCTAATTGTGAGTGATTCTATAAGACGTTTTCTTACTTAGGTG
TCCATGTTGTTCTCAAGTTGAACCCAACAAACATATCTCATCTCATATCT
AGTCGACACATCGAAATTAAAAAGActtattatattttcaattttctcat
gAGGGAAGGTTCAGGGTGACTTATCGGAACTAAAGGTAGCATTCTTTCTG
GAGCTGGTAAAGAATGTTATCTAAGAGTGGTTTTATTCAAAATACGGACC
AGATTTCACTGGTATACCTTGGGTACCGATAAGTGCTGTTGATCATCTTC
TTTACTTATGTATGATattgtctgtctgtctgtctgtctgtctgtctgtc
tgtctgtctgtctgtctgtctgtctattGATCTGTAGGTTATTGTTTTTT
CTGGTCAAGTGGTGCGGGTTGAACAGCCTAACCTGAAGAAATAGTTGGCA
GTTAAAAGTACGGAGTGGAAGTTTCAAATTAAGATTATGAGTTCGAACGC
TATTTGAGTGTGTTCAGAAAGTGGTGTATATGAAATTAATTGACATTATA
ACAACCAGTTAAAAGAAGTAAATGGATTGACGTCACATAGGAAAAAGGgt
tttaaacaatattttgaatcGTTTTCTTTGACCACAAGATTTGtattgga
aaaaactttttggttgCACAGCGTTTCGTCACAGGAAGAGACTGCTTTTT
CGATGTTTgtgaaatttcaagaaaatgtgCGGAAATTGTCTGCCCTCCTC
TTTTTATAACTTACAAGAGATGATTGGTGATTTCCGCTTATTGAGGTGAC
CGCAAATGAATTGACCGGTTTCCTTCGTATccttctgatgacgtcatttc
gaTTTTGAAGGGGCTCACTTGTTTATATTATCTTAACGTTCCTTTACAAA
AactttgaaatgtcatttttgacaattttgttttgattttggagtGACGC
TTTATCCATACCTGTTTATAGATTACTTAACCTCTGATCACATCTCTTAA
GTCTGAATCGACATCAAAACACGTGCCTTGTTTCCATGGTAACATATAGA
TTAAGTCAATTGGTAATTAATGTTAGCTATAGCCATTTTGTTTAATGACT
GTCCACAAAAAAGCTATTAATATCAACCCTAACCGATAATCAGAGAGTTC
TTAGTCTCCTCACCTTCTTTTGCTTTTGAAAGTTCCATTGAAAGTTCCAT
TGAAAGTTCcattgaaaattccattgaaagtTCCATTGAAAGTTCCATTG
AAAGTTCCTCAAGAGTAGCAAGAGAGATACCACACCTGATCTCAGACTTC
GGTTTTCAGCTTATCGCTTCCTTTTGTGTTTTGTGCATTCCTTTTGTCAT
TTATTCTCTGTTCTGTTAAATGCACATCGGGGTTTTTTTGAAGTACAGAT
GGTCATGGTTAGTCTatttgtattttcttcagtCCATATAACttaattac
acgcttttttataagaatacactttataagaatgtccatgatgaaaatgg
ccaaaaacatTAAGAATAATGTTAAAATATCACCATGGTTAGTGTatttg
tattttcttcagtCCATATAACttcattacacgctttttttataagaata
cactttataagaatgtccatgatgggAATGGCCAAAAACATTAAGAATAA
TGTTAAAATATCACCATGCTTAGTGTatttgtattttcttcagtCCATAT
AACTTCATTACGTTCTACTAACCACAGAAACGCATCTCTGCCTGATTCAA
ATGTGATCTCTAGTCGCGAAAGGGAATTCCTTTTCctccaaatgaaaaaa
aattgcgcgAGTATTTCAAACATATCTAGAGCAGTTTTGTACATTTCGCC
AGAGATAGGCATGGGACGACTCGATACAAGGtagtaaataaataataaat
aattgtGAGAAGTTCGGTACAAGGTGTATTTGCTGACACACATCTCTTGC
CTTTccagaaaagttttaaaaagtccTCTTTTTTCTGGAATACGGGGAAA
CTCAAAAATACATTGGCAAATATCTAATAGGTAATTCAGGCtttcaatat
ttattcaatagATTAAGTAATTAATAAATTTTGGTCTAATTTTTCCCGTA
ATTATCAAATTCAATATTGATAATGAGACGGAGTTACTTCGCAAATTTGA
ATcgattgaaaaatgattaaaaaactCGCTCCGCATATTGACGTTTTTCC
TGAAATCTCCAATTTCATAGTGTTTCCTGATGGATAGATACTGTGGTGGA
GCAATCCCTCTCATCAAACAAAAGGGGAAAATATAATCGGATGTTATTAA
TCATAGCCTTGATTAGCACGTACAATGATGGCATTTTGTGTTCtcttatt
ttgttttattttgttcaagTGTTATGATACGTACACACATACAAACATAT
ATGCTAGGAGAAAGTCACTTCGAGGAGTGAGAGAGAACTtttgtttgaaa
gaaatttcattgATGTCTTTAATGGAAGCTTTCTATTGCTAAGCATCGTC
ATGACTGTCAGAATATTgcgaaaaaactcaaaaaactctCTGTGTAGGTT
CTTATTGGTGATATTATAACTATTTCTGTTGCTAAAAAGAATTGTTGGTT
AATTCATTCATTTCTTGTGTTCATAATTTTATTTAGTAGAATACCAAAGA
ATACACATTGTCAAAATGTTCATTTATGCAAGTTTTTTTTCGATCGTTTT
ATTTCTTCGTGCTTCTTTTTCAGATTCGCGTGTCGATCCGTCCCTTCTGG
AAAAGGTTGGCAAACTCGAACGTCAACGCATCGCTGATCAACTTAACGAG
CGTCTTCTTCAACGTCCTGGTCCCATCGAGCTTATACAAGATCGAATCCT
TCCTGTCGAATCACCCATACAAAATGCTATCGACCAAGGCAGTGTAGACT
ATCAACAGACCGTTTCCCCCGCTTCCTCACACGCGGATTCGCCTTCCGTC
TCCGAATTAGAGACAGGAATTCACACTTTGAATTGTACTTCACCTTCACC
GCCCCCTCCGCCACATTCAACGCCACAAGTTCCGCCCTTACCGAACAATT
TCTCTGATGTATCCTTCAAAAATCAACTTAAAACCGTTTCCGAATCGGGG
AAAACTTCAAACCCGTTATTCGTTTCGGATTCGTTTAAATCTGCACACTC
TATATCACTCTCACAACGTGAAAACGAACGTCTCGTCAAATCGGTCAATA
AAAAAACACGTCAACAGAAAccgaaagtaaaaaaattgaaattccacGAA
TGTCTACCGGGGTCCGGTACCGTGAAAAAAGTGGAGGCGGAAAGTGAGGT
CGTAGATGAGCGATACCAGAGACTTTTGGAGCAACAGACTTTATATTTAC
GCTTACAGGTGATGCAACAGAATGCTGTTATGAACGCTCTGCAGGGCAAC
CCAGAATCCATGGATCAAGTGAACGAAGAAATTGAACACATGatgcaaaa
agaaaataataaaacgaACGATACCAATATTAAATCAATAGACGGTAAAA
AATTGGACGATTTACGAGTTGTCGATTTAAGAGCGCAACTCAAACATCGT
GGACTCTTAGTATCGGGGGCAAAAGCCAAATTGATTGAAAGACTTCTAGC
GTTTGAAGAAGGGAAGTCAACTCCCGCCGATTTCGCTTATTCGGGAAGTA
ATTTATCTCACGATGCCAGTATTGTGGCTAGTAAGACCACGTCCACTATG
GTCCCTTCAACCACAGTGATGCAAGTAGCAACTTACGCTACAAACAGTGG
TCAAACATACCAAGTGGTACAAACCGTCCCACAATCCTCTCCCAGCATCA
TGCAATACCAGGTCGTCCCTGCTACCTCTTCTTCCGACGAGCAACTCTCT
AGACTGGATCAAGTCAACACGGTTCCTGTGATGGCCCTCACACAGCCTAG
TGTAATGTCAGTTCAAGAGAGAGTAAGCGACAAGCCACTTCGCGCCCAAG
CAACGCCCTCACCATCGCACATCCAATTCCATATCACTCCCCCGCCTCAA
CCACAAACGCCCACCATCGTTCTCCACTCGGGGCCGCCTCTGCAACAAGC
TTCCCTCTACCAACGACAGCGACAACAAAAggtcaaagttcaaaaattac
CTGTCATCAGTCAAGGCCAGTGTTTCGATCTTTCGGAAAGCAACTCGCAA
CCGCTCGGCCTCTCACAGTCCGTACCACCCATGCAACTGAACAATAATTA
CTTGATGGAAGCGAACCAATGTAATCTCAACTACAACACATCTCTCAGTA
ATTCTTCCCTTCACACAGACGTCAATGCAGACAACGACCTCTTTAACAAC
CCCTCAACGCAATTTCGTGGTCGTGCATCCAGTGAACCGGCTTCTCAATT
GAAGAAAATGCATCCACTGAAATCAGATAGTACTAAATCAGTGTTTAGCC
ACCAACAACAAGACCTTTCACTTCAATTCCCTAAAATGTCACCCTCTCCG
TCACTGAGCCTCAAAGATCATCACCAACTACCCGTAAGTTCAACATTCCC
GCATCTacaatatattgagaatttcagttttttaacgtttttcaagattt
aaagtcccggcgagaaagtcgattttgggctatctctttaatctaattga
atatttcaatttgggaggggtcgtcagacttccaggctatattctgagcc
ttattggactatctttgaacttttggatcttcAGATCCTAAAGTCGTAAA
tgttaagtctagcgttaaaactcagagttaaaactctacccttcgaacct
actttagagcactttcaaatcgattgtggttcacttcccggtgaatttcc
cttttttctcaaatattatgaccttgattgtatttCTGTGTTTTCATCGT
CGTTAAATATTGATGACTCTGCTACAATGTTCAACGAGAAGTTGGGTGGG
TTTGTTCAACGAGTGAAATCGTTTATCTGTCTGGTCTGAAGTGAATTTAC
GACTAACAGTTAGAGTGTAGCttttaaaatatgtaaaaagatgACTGTAC
CACATCTTGCAGATGTTGTATAACTCTGCTGATAACAGAAGACCATTATC
TCAAATATTGCCATTCTCTCCATCATAACTTATCTCCACAATATTTTGCT
TTTTAGAATTCCATCAAGTCTGAGAATATGGATGACATTATGGACATTAT
TGGAGGTcagcttttttttttcatcgctCTATTTTCTCCTGTTGTGTCAA
ATTTGTACACGTGAACACCAAACTTAGTCTTCTGAGCCCAAACCACCTTT
TTCCCCATTCCACAAAATCTACATGAGTGAAGAATCAGTATGGTGATGAC
ATTGAGTGATTTCAATTTAAATGCTTTTGAAAATCGTCCAATCACAAGAC
TAGAAAGACCTTTCAATCAccaatttgaatgtttttgaaaatcgtcCAAT
CACAAGACTAGAAAGACCTGTCAATCGCCCGATTCGTTAGTCGACAGGTT
ACCATCAATTCTAGCGCCGCCAGGGGATTGGGTTCAAGTTTTTTAGCGTC
TGTTGTCTTCAAGCGAGTTTATTCTCCAGACATATGACGACATCCGACCA
TGTTAAATTTGGACTCAACCCCCTTGATGGCTTAGGGCTTGATGTGTGGA
TCGCATgacatcaattttcaatttattgaagAGTTCTTTCTTGTCTGGTT
AACAGGAGATGTGTTCAAATTAGTCACGCTTGAACGACTCGCGTTTTTTG
TGATCAAAACCTTTTAGCCACTGACATGTTCGGTCAACACACCTGTAGGT
GATCAAGCCCCCTAAAATGGACCGACTTTCGCTATGAGCTCACTACTAAC
TTTCCATGTATTAATTTTTCAGAACTCTCCTCGTCACCAGGCCTTATGAA
AGAACCGCCACCTCCTTACAACTCGTGTTACTATGACAACAAGAAATTAC
TGACGGAGCAAAAACCGTTCAACACTCCGGACGCGCACGATTTGAACCTT
TTATCAGGTTCGCCTTCACAGAACTTTTTGAACAATTCTTTTTATAACAC
GGCTGGTTTTAACACCTCTTCCTCCACCGGAAGCATCCCGCAACAAACCT
CACCTACGCCTTTCCGTGGAACCTCTCCCTCACATTTCATGAACACGGCG
GCGCTTTCACCCACCAACGCCACCACGGATGACCCAATGGAGTTGGACCG
CTTTCCCTCACCAAACATGATGGCGTCCAACAATTCTTTAAACTGGCTCG
ACCTGAATATGGAACCAAATTCTCCTAATATGAATTTTCAGACAATAAAA
GACAATAATACTGCGAATACCACAAATTCAATGAATATGGATCTTCAGAA
TGGGATGTTTAGCAACGAGCTGAACAACCAACAACAAACTTTATATAATA
ATCAAAACAGACAATCGCAGAATTCTCTGTTTTACGGTAGCAGTCCTCGA
CAGCAAGATGgttttatttcactttttgatctCGAGGGAGGCGAATACTA
ACTTAACAATTTTTCTTCAcacgcaaaaaatcaaaaaattctgtTCTTTC
TTTCTCATGTAATGAAAATGttgtataaattttttttaatttaatatttt
tttctcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013888XLOC_013888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024727-exon-sc0000509-1491911889:138648..138848TCONS_00024727-exon-sc0000509-1491911889:138648..138848Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1510915933:138648..138848TCONS_00024727-exon-sc0000509-1510915933:138648..138848Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1575043694:138648..138848TCONS_00024727-exon-sc0000509-1575043694:138648..138848Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1491911889:145439..145500TCONS_00024727-exon-sc0000509-1491911889:145439..145500Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1510915933:145439..145500TCONS_00024727-exon-sc0000509-1510915933:145439..145500Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1575043694:145439..145500TCONS_00024727-exon-sc0000509-1575043694:145439..145500Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1491911889:145733..145811TCONS_00024727-exon-sc0000509-1491911889:145733..145811Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1510915933:145733..145811TCONS_00024727-exon-sc0000509-1510915933:145733..145811Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1575043694:145733..145811TCONS_00024727-exon-sc0000509-1575043694:145733..145811Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1491911889:148571..150330TCONS_00024727-exon-sc0000509-1491911889:148571..150330Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1510915933:148571..150330TCONS_00024727-exon-sc0000509-1510915933:148571..150330Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1575043694:148571..150330TCONS_00024727-exon-sc0000509-1575043694:148571..150330Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1491911889:150954..151002TCONS_00024727-exon-sc0000509-1491911889:150954..151002Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1510915933:150954..151002TCONS_00024727-exon-sc0000509-1510915933:150954..151002Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1575043694:150954..151002TCONS_00024727-exon-sc0000509-1575043694:150954..151002Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1491911889:151670..152406TCONS_00024727-exon-sc0000509-1491911889:151670..152406Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1510915933:151670..152406TCONS_00024727-exon-sc0000509-1510915933:151670..152406Clytia hemisphaericaexon
TCONS_00024727-exon-sc0000509-1575043694:151670..152406TCONS_00024727-exon-sc0000509-1575043694:151670..152406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000509supercontigsc0000509:138648..152406 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.84513e-05	0	0	2.49027e-05	8.31357e-08	0.000308869	1.97353e-06	0.00127335	0	0.000175084	0.000763526	0.00112213	3.67927	3.68988	0.976634	2.24578	6.3753	6.38228	6.85858	7.00124	0	0	0	0	0.00524744	0.000232242	0	0	0	0
Blast
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BLAST of TCONS_00024727 vs. Swiss-Prot (Human)
Match: MKL1 (MKL/myocardin-like protein 1 OS=Homo sapiens GN=MKL1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.638e-20
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  219 TPAIFNKVAQ-LERKKTGDFLTKKIRARPSRQQLIQRHILSADSRVDPSLLEKVGKLERQRIADQLNERLLQRPGPIELIQDRILPVESPIQNAIDQGSVDY 521
            +PA F++  + LER +T D+L +KIR+RP R +L++ HIL  ++  +PSL  K  KL+R R+AD LNE++ QRPGP+EL++  ILPVES ++ AI  G V+Y
Sbjct:    6 SPAAFHEQRRSLERARTEDYLKRKIRSRPERSELVRMHILE-ETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNY 106
The following BLAST results are available for this feature:
BLAST of TCONS_00024727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MKL13.638e-2049.02MKL/myocardin-like protein 1 OS=Homo sapiens GN=MK... [more]
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