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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024694 ID=TCONS_00024694|Name=TCONS_00024694|organism=Clytia hemisphaerica|type=transcript|length=1209bp
GCATAAGAAAGATGAAATACTTATTACTGTTATTGGTGATTTTACCAGCA
TTGAATGCGTCTAACAATGATCATGATATCAAGATATTGAAACTTCAAGT
CAAAGCTTTAATGAAACTGCAGACAGACACAAGCCTGAAACTAACTCAAA
CCAATCAAAAACTAGCAACAAATAACCAGATCCTCAAACAACAATTATCT
CAAACAGAACAGAAAGTCAAAGCCTTGGTGGCTAAAGATCAAACTCTCAA
TGGATACTGCAAGATCAAATCCAATCAATGTGGTTCATGCTACTGCGCCC
AAGATTTCAACATTCCTGCAAAATTTTATTGTGATTGTCGAGCGAGAGCG
GCGAGAAGAGATTGCAAAGAGCATTACTTGCAAGGTGAACGGACCAATGG
TTTGTACCGGATCAATTTGAATACATATGGAATAGTAGTTCCGGTGTTTT
GTGATCAGACCACTGATGGAGGTGGTTGGACTTTGCTTCAGAGACGAGTT
GACGGGTCAACGAACTTCTTTCGCAATTGGGAAACCTACAAAGAAGGCAA
CTCCAACATGAACACTGGCTAGGGAACGACAATCTGCATCTTCTCACTGC
ACAATCTGTTTTGACCGGCTCTGAAGTTCGTTTCGATCTTCAAGTCAAAG
ATTCTACTTCATGGAAATACGCGAAATATTCAAGTTTTCATATCGATGGA
GAGTCGAATGCTTACCAACTACATATCAATGGCCACACAGGGAACGCTGA
AGATGCAATGGTCAACCACAATGGAATGAAATGGTCTACTCCCGATCGAG
ATAATGACATCTGGTCTGCAAATTGTGCTTACGATCGACACGGAGCTTGG
TGGTATAAAGCTTGTTCTCATGCTAATCTCAACGCAAACTCTTGGGATGA
GCTCAAAGAAGAAAGCAAGATCTATAAGACATTTTGTTGGTATAGTTCAC
GCCTTCAATTCTCAGAAATCAAAGTGCGAAGGAAGtaaattttatttgtt
aaacATACGGCTTTGGAAGTAATGTTTGAGCTACCCAGTAAATGGGATCT
TTTTCGAAAGATTCTTAttactttaagggaagaaattttagggGGTCTTA
TGGAATAAAGGTGCTTAAAATCTTATAATTTATAGGGTTTCAATGGCTAG
ATCTTAAGATATTTGGTATTGATTCAAATATCTTTATCTATCGTGAAACT
TAAATGCTG Run BLAST on NCBI protein sequence of TCONS_00024694-protein >TCONS_00024694-protein ID=TCONS_00024694-protein|Name=TCONS_00024694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
IRKMKYLLLLLVILPALNASNNDHDIKILKLQVKALMKLQTDTSLKLTQT
NQKLATNNQILKQQLSQTEQKVKALVAKDQTLNGYCKIKSNQCGSCYCAQ
DFNIPAKFYCDCRARAARRDCKEHYLQGERTNGLYRINLNTYGIVVPVFC
DQTTDGGGWTLLQRRVDGSTNFFRNWETYKEGNSNMNTG Run BLAST on NCBI transcript from alignment at sc0000507:89350..91000- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024694 ID=TCONS_00024694|Name=TCONS_00024694|organism=Clytia hemisphaerica|type=transcript|length=1651bp|location=Sequence derived from alignment at sc0000507:89350..91000- (Clytia hemisphaerica)
GCATAAGAAAGATGAAATACTTATTACTGTTATTGGTGATTTTACCAGCA
TTGAATGCGTCTAACAATGATCATGATATCAAGATATTGAAACTTCAAGT
CAAAGCTTTAATGAAACTGCAGACAGACACAAGCCTGAAACTAACTCAAA
CCAATCAAAAACTAGCAACAAATAACCAGATCCTCAAACAACAATTATCT
CAAACAGAACAGAAAGTCAAAGCCTTGGTGGCTAAAGATCAAACTCTCAA
TGGATACTGCAAGATCAAATCCAATCAATGTGGTTCATGCTACTGCGCCC
AAGATTTCAACATTCCTGCAAAATTTTATTGTGATTGTCGAGCGAGAGCG
GCGAGAAGAGATTGCAAAGAGCATTACTTGCAAGGTGAACGGACCAATGG
TTTGTACCGGATCAATTTGAATACATATGGAATAGTAGTTCCGGTGTTTT
GTGATCAGACCACTGATGGAGGTATGAGTATTTGCTCATTTTTAATTCGA
AACCTGGGTTAGAAAAGCTTGTTCTTTCATTTTCGCGATCCATTTAAAAG
ACATTCTTAAACTTAAGAAAAATACTGCTGAAAAAGAGATTTTGCGAAGC
TAGTCGATGTTTAACCGAGTTTCTAATCTAGAACGCTAGACCACAGAATT
TAAGAGAGATATCAGGGTATGGTAAGAAGAAATTAGAGATCTTATACAAA
ATAACTAATATAATATAATAATATCTAACAGTTTCTGCAACGTTTTGACG
GTTGTCTTTATCAACTTTATGCATATAGAACGTATATGTACAACTTGTAC
TATAAGCAACATTAACCTATTTTCCTTATACCTTTTACTCGTCTCTTGCA
TTGATTCTTTATTGTTGGTGGAAAATATTTAAAAGTAGTATGTTTTTCCT
GATCAAATTTTAGGTGGTTGGACTTTGCTTCAGAGACGAGTTGACGGGTC
AACGAACTTCTTTCGCAATTGGGAAACCTACAAAGAAGGCAACTCCAACA
TGAACACTGGCTAGGGAACGACAATCTGCATCTTCTCACTGCACAATCTG
TTTTGACCGGCTCTGAAGTTCGTTTCGATCTTCAAGTCAAAGATTCTACT
TCATGGAAATACGCGAAATATTCAAGTTTTCATATCGATGGAGAGTCGAA
TGCTTACCAACTACATATCAATGGCCACACAGGGAACGCTGAAGATGCAA
TGGTCAACCACAATGGAATGAAATGGTCTACTCCCGATCGAGATAATGAC
ATCTGGTCTGCAAATTGTGCTTACGATCGACACGGAGCTTGGTGGTATAA
AGCTTGTTCTCATGCTAATCTCAACGCAAACTCTTGGGATGAGCTCAAAG
AAGAAAGCAAGATCTATAAGACATTTTGTTGGTATAGTTCACGCCTTCAA
TTCTCAGAAATCAAAGTGCGAAGGAAGTAAATTTTATTTGTTAAACATAC
GGCTTTGGAAGTAATGTTTGAGCTACCCAGTAAATGGGATCTTTTTCGAA
AGATTCTTATTACTTTAAGGGAAGAAATTTTAGGGGGTCTTATGGAATAA
AGGTGCTTAAAATCTTATAATTTATAGGGTTTCAATGGCTAGATCTTAAG
ATATTTGGTATTGATTCAAATATCTTTATCTATCGTGAAACTTAAATGCT
G Coding sequence (CDS) from alignment at sc0000507:89350..91000- >TCONS_00024694 ID=TCONS_00024694|Name=TCONS_00024694|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0000507:89350..91000- (Clytia hemisphaerica)
GTGGTTGGACTTTGCTTCAGAGACGAGTTGACGGGTCAACGAACTTCTTT
CGCAATTGGGAAACCTACAAAGAAGGCAACTCCAACATGAACACTGGCTA
GATAAGAAAGATGAAATACTTATTACTGTTATTGGTGATTTTACCAGCAT
TGAATGCGTCTAACAATGATCATGATATCAAGATATTGAAACTTCAAGTC
AAAGCTTTAATGAAACTGCAGACAGACACAAGCCTGAAACTAACTCAAAC
CAATCAAAAACTAGCAACAAATAACCAGATCCTCAAACAACAATTATCTC
AAACAGAACAGAAAGTCAAAGCCTTGGTGGCTAAAGATCAAACTCTCAAT
GGATACTGCAAGATCAAATCCAATCAATGTGGTTCATGCTACTGCGCCCA
AGATTTCAACATTCCTGCAAAATTTTATTGTGATTGTCGAGCGAGAGCGG
CGAGAAGAGATTGCAAAGAGCATTACTTGCAAGGTGAACGGACCAATGGT
TTGTACCGGATCAATTTGAATACATATGGAATAGTAGTTCCGGTGTTTTG
TGATCAGACCACTGATGGAGGTGGTTGGACTTTGCTTCAGAGACGAGTTG
ACGGGTCAACGAACTTCTTTCGCAATTGGGAAACCTACAAAGAAGGCAAC
TCCAACATGAACACTGGCTAGATAAGAAAGATGAAATACTTATTACTGTT
ATTGGTGATTTTACCAGCATTGAATGCGTCTAACAATGATCATGATATCA
AGATATTGAAACTTCAAGTCAAAGCTTTAATGAAACTGCAGACAGACACA
AGCCTGAAACTAACTCAAACCAATCAAAAACTAGCAACAAATAACCAGAT
CCTCAAACAACAATTATCTCAAACAGAACAGAAAGTCAAAGCCTTGGTGG
CTAAAGATCAAACTCTCAATGGATACTGCAAGATCAAATCCAATCAATGT
GGTTCATGCTACTGCGCCCAAGATTTCAACATTCCTGCAAAATTTTATTG
TGATTGTCGAGCGAGAGCGGCGAGAAGAGATTGCAAAGAGCATTACTTGC
AAGGTGAACGGACCAATGGTTTGTACCGGATCAATTTGAATACATATGGA
ATAGTAGTTCCGGTGTTTTGTGATCAGACCACTGATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024694-exon-sc0000507-1575043694:90530..91000 | TCONS_00024694-exon-sc0000507-1575043694:90530..91000 | Clytia hemisphaerica | exon |
| TCONS_00024694-exon-sc0000507-1575043694:89350..90087 | TCONS_00024694-exon-sc0000507-1575043694:89350..90087 | Clytia hemisphaerica | exon |
| TCONS_00024694-exon-sc0000507-1510915933:90530..91000 | TCONS_00024694-exon-sc0000507-1510915933:90530..91000 | Clytia hemisphaerica | exon |
| TCONS_00024694-exon-sc0000507-1510915933:89350..90087 | TCONS_00024694-exon-sc0000507-1510915933:89350..90087 | Clytia hemisphaerica | exon |
| TCONS_00024694-exon-sc0000507-1491911889:90530..91000 | TCONS_00024694-exon-sc0000507-1491911889:90530..91000 | Clytia hemisphaerica | exon |
| TCONS_00024694-exon-sc0000507-1491911889:89350..90087 | TCONS_00024694-exon-sc0000507-1491911889:89350..90087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000507 | supercontig | sc0000507:89350..91000 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
BLAST of TCONS_00024694 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3) HSP 1 Score: 97.4413 bits (241), Expect = 1.493e-33 Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query: 551 LQHEHWLGNDNLHLLTAQSVLTGSEVRFDLQV--KDSTSWKYAKYSSFHIDGESNAYQLHINGHTGNAEDAMVNHNGMKWSTPDRDNDIWSANCAYDRHGAWWYKACSHANLNANSWDELKEESKIYKTFCWYSSR-----LQFSEIKVR 979
++ E WLG DN+H +T+Q R++L+V +D +A Y F ++ N Y+L I + G A D++ H G +ST DRDND+ NCA GAWWYK C NLN ES+ + WY + + F E+K+R
Sbjct: 1204 VEDEFWLGLDNIHRITSQG-------RYELRVDMRDGQEAAFASYDRFSVEDSRNLYKLRIGSYNGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKY-----GESRHSQGINWYHWKGHEFSIPFVEMKMR 1341 HSP 2 Score: 64.3142 bits (155), Expect = 1.493e-33 Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 3
Query: 369 EHYLQGERTNGLYRINLN-TYGIVVPVFCDQTTDGGGWTLLQRRVDGSTNFFRNWETYK 542
+H + G+ +G+Y I LN + V+CD TTDGGGW + QRR +G T+FFR W Y+
Sbjct: 1140 QHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYR 1198
The following BLAST results are available for this feature:
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