TCONS_00024694-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024694-protein
Unique NameTCONS_00024694-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length189

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024694-protein ID=TCONS_00024694-protein|Name=TCONS_00024694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
IRKMKYLLLLLVILPALNASNNDHDIKILKLQVKALMKLQTDTSLKLTQT
NQKLATNNQILKQQLSQTEQKVKALVAKDQTLNGYCKIKSNQCGSCYCAQ
DFNIPAKFYCDCRARAARRDCKEHYLQGERTNGLYRINLNTYGIVVPVFC
DQTTDGGGWTLLQRRVDGSTNFFRNWETYKEGNSNMNTG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013862XLOC_013862Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024694TCONS_00024694Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014716Fibrinogen_a/b/g_C_1
IPR002181Fibrinogen_a/b/g_C_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..78
IPR014716Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1GENE3D3.90.215.10coord: 19..189
e-value: 9.8E-25
score: 87.1
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPFAMPF00147Fibrinogen_Ccoord: 118..187
e-value: 1.0E-21
score: 77.6
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPROSITEPS51406FIBRINOGEN_C_2coord: 112..189
score: 23.658
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSUPERFAMILY56496Fibrinogen C-terminal domain-likecoord: 116..187

Blast
[Close]
BLAST of TCONS_00024694-protein vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.497e-17
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0 
Query:  112 CRARAARRDCKEHYLQGERTNGLYRINLNTYGIVVPVFCDQTTDGGGWTLLQRRVDGSTNFFRNWETYKEG 182
            C   +  RDC +  L G++ +G+Y +    Y     V+CD  TDGGGWT+ QRR DGS NFFR W+ Y++G
Sbjct:  235 CATGSRPRDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDG 305
The following BLAST results are available for this feature:
BLAST of TCONS_00024694-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD16.497e-1745.07Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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