TCONS_00024686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024686
Unique NameTCONS_00024686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024686 ID=TCONS_00024686|Name=TCONS_00024686|organism=Clytia hemisphaerica|type=transcript|length=1541bp
TCTTCTTACTATCTTTAGATTAAAGAAAGTTTAAAGGAAATAACtattat
ttgaagaaaaaaaataagacattacAGAGATTATTATACTTCTAAAGATG
GGAAAGAATTGAAAAGTGAACACGATGACACGATGGGCACGCTTCAAGAA
CAAACAAGAACATGATGCTTCTTCATGGCAAGATTTGAAGAAAGCTAAAC
AACATAATCGAGGGAAGAATAACAAGGGCGGAAAGGAGGAAGAAATACCG
GAATGGCTAGAGAAAAGAAGAGCTGCACGTCGTGAACGCAGAAAACGTGG
GAAGCCATGCTTTCATTGTCGAGAACCAGGCCATATGGCTGCAAGATGTC
CGAAAAAAGGCGAAGGAGAAAGCGCACAAGACATTTGCTTCAAGTGTGGT
TCAACGGAGCATAGCATCTATCAATGCAAGAAAGACACCGGTGATGACAT
GCCGTTTGCAACCTGTTTCATTTGTAAACAGAAAGGACACCTTTCAAGTA
AATGTCCAGACAACCCAAGAGGTTTATATCCTGACGGTGGTGGTTGTCGA
TTTTGTGGTTCTGTTGAACATTATCGTCGAGATTGCCCAGAAAGGAACCC
CAACAAGAATAACGGTGAACGCAAACAAACGTTCAAGATGAGAACACAGG
CTAAAGAGGAAAGTATAGAGGCTATCGATAACTCATCAGACGATGAAAGT
GATCATAATGAAGCGCCCAAACCAAAAAAAGCTAAAGTCGTCAAATTTTG
ATTGGGGAGATTTTAGTGTAATTCAGAAACGTCCATCCAACTTTACAGAA
TGTCTTGAGAAACATCATCTAATCATGTATTGTCAAAATAACGCGGAGTG
TAAAAGAAAAGTATCTTGATCGAATTACCGAGAGATAGACCTTGTTCGCT
TTGTTGACCACGTGGTATCAGGCATCATTTACCTGGAAAAAGTGTGTAAT
ATTAAAATGAATCAGAGTCAACTCCGATGGCTGACTTTGCTTTATTCTGG
TACAACGATAAACAATGGTTGTTGATTCACGTATTATAATTTTTCTGGAC
AATTTGAGAACTCATTGTCTACACCAGACATGGCGTATGGTCATGGTCAA
AAGACTTTTCGACGATTGACGACCTCCTGGAGACCAATTAAAGTTTTGGT
TAAGGTCCAAGTCACTTTCCATAGAAAGCTACATTACTTTCATTTTGTTG
TCTTTTCATGTGTTTCATATACTcttgaaaagtaaattttaattctaaag
cttataacttgacaactTCTGGGCCAAATTTAGTATAGGTATAAAAAGGT
ATAgtttaaaatttaagattttctcCCTTCTAGCAAAGGTAGCGTAGTTC
TTAACTAACGCTTAACACGCTTTTTGAGTCACAGTAGTATATTATTTTTT
ATGGCTTCTTAACTAAATGATTTTTATAATTACTATTATTTTTTGGGGAT
GCTTGAATTTAAACCTACTATATGTGGGTCTTAAAGATCAAACCATTATT
CATAACTCGATCatgtctctttaattcgaacaaagTAGTTG
Run BLAST on NCBI

protein sequence of TCONS_00024686-protein

>TCONS_00024686-protein ID=TCONS_00024686-protein|Name=TCONS_00024686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MTRWARFKNKQEHDASSWQDLKKAKQHNRGKNNKGGKEEEIPEWLEKRRA
ARRERRKRGKPCFHCREPGHMAARCPKKGEGESAQDICFKCGSTEHSIYQ
CKKDTGDDMPFATCFICKQKGHLSSKCPDNPRGLYPDGGGCRFCGSVEHY
RRDCPERNPNKNNGERKQTFKMRTQAKEESIEAIDNSSDDESDHNEAPKP
KKAKVVKF
Run BLAST on NCBI

transcript from alignment at sc0000507:32981..37275+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024686 ID=TCONS_00024686|Name=TCONS_00024686|organism=Clytia hemisphaerica|type=transcript|length=4295bp|location=Sequence derived from alignment at sc0000507:32981..37275+ (Clytia hemisphaerica)
TCTTCTTACTATCTTTAGATTAAAGAAAGTTTAAAGGAAATAACtattat ttgaagaaaaaaaataagacattacAGAGATTATTATACTTCTAAAGATG GGAAAGAATTGAAAAGTGAACACGATGACACGATGGGCACGCTTCAAGAA CAAACAAGAACATGATGCTTCTTCATGGCAAGATTTGAAGAAAGCTAAAC AACATAATCGAGGGAAGAATAACAAGGTATCATTTTTATCCATGGACAAC CAGTTCATCCCACCATATAGGCTATTCTTCAATAATAAACTCGAGGAAgt cattgttttctttaattCGAGGAAACTGTTAAGGAAGTCATTTTGAAAGA TTCAATTCCCCCTTCTGGGTTTTTACGGGAATGTAAGAGACAGTCTTGGA CTTTCCTCTAAATTTCAAAGACTTTAAGGATAAAAATGTGGCATATTTTA GTCCAACCCAAACAATCATTCAAAGTACACTctatgcaaagaaaaaaaat cactatTACAGTTATTGGTAAATTCACGGTGAAAGGTTAAGTTTTTAACA ACGCCGGAGTTTTTATTTGCACTTCTTCCTGCCTGTTTTAGCTTGAGTTT CCAGCGTCAGTTTATGCTCTATTATTTTGTAGGGCGGAAAGGAGGAAGAA ATACCGGAATGGCTAGAGAAAAGAAGAGCTGCACGTCGTGAACGCAGAAA ACGTGGGAAGGTTTGATTTTACTTTACTCTTTGCTAACAAAATGAAGGTC ATGAAAGAGTATTGTCAATGATACTGAACCTAACTTTCAACTTTTCTAAG TTAAAAGTTAGTCAAATGTGACACAAGATATTGAAGTCAATTCGTTTTAA GTGTGTTTGCTATTAAGTGTAAACCACGTCAGTTTAATTTGACTAATTGC CTCTGGAGTGGTTTTCACAGGCGAGGGTAGCAAAAAAGAGAGCATAATAG CACAACGCACCGaatctagtctacacaatagacagttccgggcttttagg ccttactctttgtctataggcactgctataggcgggcggccactagtaac ccccaccgagaattgcttattaatatgtttaaacataatagacaactttc acaaaagatgtttatcaatagagatttcaaataaaagaatgctTAAAACA Caactgattggcttaggtttccaaactctctattgttttattacaacctc agtgcgcatgcgatttatctggagaatttcaatattccaaacaagagcag tgctcatatcccgaagagtaggagttttacgctcgaaacggagggagata tgacgtagcctaaccGAATCTAGAAATAGTAACAAATCTGCACAAATATA CTTCGCTTGTACGACCTGCGATCCCATCCTCCTTTGCGTTAAATTGCTTT TGTACGTTAATTAATTACAATATCAAAGGAAATGTAATAACTTTCACGGT TTCCCAATCGTACAAATTTctagttgaaataattatgacgtGTAAGATGC GGAACATAATTGATTTGAATAGACTGAAGGTCCTTTTGAAGTTCCGAGGA TttactttattttgtttttgaaccttttcaaatttctttctttcttcagC CATGCTTTCATTGTCGAGAACCAGGCCATATGGCTGCAAGATGTCCGAAA AAAGGCGAAGGAGAAAGCGCACAAGACATTTGCTTCAAGTGTGGTTCAAC GGAGCATAGCATCTATCAATGCAAGAAAGACACCGGTGGTATGTCGTATC ttcatgatttcaaaaatttagatctGTTAAGTTTACCAATTTCACTCTGA TTATTTACTGAGCATTTGTATTTGTAATTTGTCTTAAGTTAAGTTTAGTG TTAAATCCAGTTAGCAGAGCAGTATTCGAATTTCTTTCAGAGTGGTGATC TTTCTCCACTGTAAACGGTTATTAGTCTGAATGCTGAATGGAATCATAAA AGACGGGTTAATCGTGAAAAAAGACTCTGCCCCTTGCCTATTTGAAACTG CTAGGTATAATTGAAGTTTTATTATATCTAGACTACATTACTAGGAGCCC CACGACAAGGCCTTTGTTTCAACTAAGATAAAAGTTCAAATAAACTCAGT TTGTtctaggcgtacaaactttcgcgagcagaaactttcgcgattttcgc gaattttggccttttcgTGAatgtaaatgtctttgaaaattcttaacggG GTAATACGCGAAAGTTTATGTTCtcgaaaattctcaaaaaaatggaaatc taataaaacctcgaaatcgtaatgaatatcaaattttcggcatattttta tcctttaatgcctttttaaagtcgaagagcTACCGTCTTTATCAGATTTA AAGAATATTTCTCACTTTTAAGGCAGAAAATTCccatttttatccaacga ttcgtgaaagtttatgctcgcgaaaaaacatttttttcatcaaattcgcg aaagtaaatgtcgtaaattttgcgatttttcgaacttgcgaaagtttctg cttgtaAGCCTAAAGTAATCAGAATGACTACCTTTCTCTCTTTATAGATG ACATGCCGTTTGCAACCTGTTTCATTTGTAAACAGAAAGGACACCTTTCA AGTAAATGTCCAGACAACCCAAGAGGTTTATATCCTGACGGTATGAGCTT TTATTTTAGGAGCACAGATATACCAATAAGCCTGACAGGAGTTGTTTATc agtgtaatacagtaatagaGGTGTTACAATAATATACGGGATAATATCCA TATACGTATAAACTACACTTTGTCCCATCGattattttttgcttgattTC TGGTATGTCTTATTCAAGAGGGCTCTTACTTGAAGTAACAcggtacagtt gacgctctctaaatcgactttctactattcgatactctCCATAACTCGAT AATATTGTAACTCACCATCagtaagaaactctcataaacgacgctcgcCT ATTCTATTCGTTCTAATCCATTACTCGATTAAAATCCAATTTAAAATCGA ATttgagagcgtcaactatatttatttttctaatgcCATGTTTCGTAGAA TATTATCGAGCGTTTATTTCTCTCCTCATTTTTAGGTGGTGGTTGTCGAT TTTGTGGTTCTGTTGAACATTATCGTCGAGATTGCCCAGAAAGGAACCCC AACAAGAATAACGGTTCATAATATGTTTATCATTTATACGCAGTGCTATT CTTTTCAACATGATAACACTGTATCTTTAGGGGTTTTTAGAGAGTTCacg ttttgcttgcaacttacGAATTGGGGCGGATTGGGGTGTTTTTGATCGCT TTGCGTTCCTCTGCCCTTGATTTTAgaaataacaataacaatattttcat ttgttgaTCGTTTTATAGGTGAACGCAAACAAACGTTCAAGATGAGAACA CAGGCTAAAGAGGAAAGTATAGAGGCTATCGATAACTCATCAGACGATGA AAGTGATCATAATGAAGCGCCCAAACCAAAAAAAGCTAAAGTCGTCAAAT TTTGATTGGGGAGATTTTAGTGTAATTCAGAAACGTCCATCCAACTTTAC AGAATGTCTTGAGAAACATCATCTAATCATGTATTGTCAAAATAACGCGG AGTGTAAAAGAAAAGTATCTTGATCGAATTACCGAGAGATAGACCTTGTT CGCTTTGTTGACCACGTGGTATCAGGCATCATTTACCTGGAAAAAGTGTG TAATATTAAAATGAATCAGAGTCAACTCCGATGGCTGACTTTGCTTTATT CTGGTACAACGATAAACAATGGTTGTTGATTCACGTATTATAATTTTTCT GGACAATTTGAGAACTCATTGTCTACACCAGACATGGCGTATGGTCATGG TCAAAAGACTTTTCGACGATTGACGACCTCCTGGAGACCAATTAAAGTTT TGGTTAAGGTCCAAGTCACTTTCCATAGAAAGCTACATTACTTTCATTTT GTTGTCTTTTCATGTGTTTCATATACTcttgaaaagtaaattttaattct aaagcttataacttgacaactTCTGGGCCAAATTTAGTATAGGTATAAAA AGGTATAgtttaaaatttaagattttctcCCTTCTAGCAAAGGTAGCGTA GTTCTTAACTAACGCTTAACACGCTTTTTGAGTCACAGTAGTATATTATT TTTTATGGCTTCTTAACTAAATGATTTTTATAATTACTATTATTTTTTGG GGATGCTTGAATTTAAACCTACTATATGTGGGTCTTAAAGATCAAACCAT TATTCATAACTCGATCatgtctctttaattcgaacaaagTAGTTG

Coding sequence (CDS) from alignment at sc0000507:32981..37275+

>TCONS_00024686 ID=TCONS_00024686|Name=TCONS_00024686|organism=Clytia hemisphaerica|type=CDS|length=3762bp|location=Sequence derived from alignment at sc0000507:32981..37275+ (Clytia hemisphaerica)
ATGACACGATGGGCACGCTTCAAGAACAAACAAGAACATGATGCTTCTTC
ATGGCAAGATTTGAAGAAAGCTAAACAACATAATCGAGGGAAGAATAACA
AGGGCGGAAAGGAGGAAGAAATACCGGAATGGCTAGAGAAAAGAAGAGCT
GCACGTCGTGAACGCAGAAAACGTGGGAAGCCATGCTTTCATTGTCGAGA
ACCAGGCCATATGGCTGCAAGATGTCCGAAAAAAGGCGAAGGAGAAAGCG
CACAAGACATTTGCTTCAAGTGTGGTTCAACGGAGCATAGCATCTATCAA
TGCAAGAAAGACACCGGTGATGACATGCCGTTTGCAACCTGTTTCATTTG
TAAACAGAAAGGACACCTTTCAAGTAAATGTCCAGACAACCCAAGAGGTT
TATATCCTGACGGTGGTGGTTGTCGATTTTGTGGTTCTGTTGAACATTAT
CGTCGAGATTGCCCAGAAAGGAACCCCAACAAGAATAACGGTGAACGCAA
ACAAACGTTCAAGATGAGAACACAGGCTAAAGAGGAAAGTATAGAGGCTA
TCGATAACTCATCAGACGATGAAAGTGATCATAATGAAGCGCCCAAACCA
AAAAAAGCTAAAGTCGTCAAATTTTGAATGACACGATGGGCACGCTTCAA
GAACAAACAAGAACATGATGCTTCTTCATGGCAAGATTTGAAGAAAGCTA
AACAACATAATCGAGGGAAGAATAACAAGGGCGGAAAGGAGGAAGAAATA
CCGGAATGGCTAGAGAAAAGAAGAGCTGCACGTCGTGAACGCAGAAAACG
TGGGAAGCCATGCTTTCATTGTCGAGAACCAGGCCATATGGCTGCAAGAT
GTCCGAAAAAAGGCGAAGGAGAAAGCGCACAAGACATTTGCTTCAAGTGT
GGTTCAACGGAGCATAGCATCTATCAATGCAAGAAAGACACCGGTGATGA
CATGCCGTTTGCAACCTGTTTCATTTGTAAACAGAAAGGACACCTTTCAA
GTAAATGTCCAGACAACCCAAGAGGTTTATATCCTGACGGTGGTGGTTGT
CGATTTTGTGGTTCTGTTGAACATTATCGTCGAGATTGCCCAGAAAGGAA
CCCCAACAAGAATAACGGTGAACGCAAACAAACGTTCAAGATGAGAACAC
AGGCTAAAGAGGAAAGTATAGAGGCTATCGATAACTCATCAGACGATGAA
AGTGATCATAATGAAGCGCCCAAACCAAAAAAAGCTAAAGTCGTCAAATT
TTGAATGACACGATGGGCACGCTTCAAGAACAAACAAGAACATGATGCTT
CTTCATGGCAAGATTTGAAGAAAGCTAAACAACATAATCGAGGGAAGAAT
AACAAGGGCGGAAAGGAGGAAGAAATACCGGAATGGCTAGAGAAAAGAAG
AGCTGCACGTCGTGAACGCAGAAAACGTGGGAAGCCATGCTTTCATTGTC
GAGAACCAGGCCATATGGCTGCAAGATGTCCGAAAAAAGGCGAAGGAGAA
AGCGCACAAGACATTTGCTTCAAGTGTGGTTCAACGGAGCATAGCATCTA
TCAATGCAAGAAAGACACCGGTGATGACATGCCGTTTGCAACCTGTTTCA
TTTGTAAACAGAAAGGACACCTTTCAAGTAAATGTCCAGACAACCCAAGA
GGTTTATATCCTGACGGTGGTGGTTGTCGATTTTGTGGTTCTGTTGAACA
TTATCGTCGAGATTGCCCAGAAAGGAACCCCAACAAGAATAACGGTGAAC
GCAAACAAACGTTCAAGATGAGAACACAGGCTAAAGAGGAAAGTATAGAG
GCTATCGATAACTCATCAGACGATGAAAGTGATCATAATGAAGCGCCCAA
ACCAAAAAAAGCTAAAGTCGTCAAATTTTGAATGACACGATGGGCACGCT
TCAAGAACAAACAAGAACATGATGCTTCTTCATGGCAAGATTTGAAGAAA
GCTAAACAACATAATCGAGGGAAGAATAACAAGGGCGGAAAGGAGGAAGA
AATACCGGAATGGCTAGAGAAAAGAAGAGCTGCACGTCGTGAACGCAGAA
AACGTGGGAAGCCATGCTTTCATTGTCGAGAACCAGGCCATATGGCTGCA
AGATGTCCGAAAAAAGGCGAAGGAGAAAGCGCACAAGACATTTGCTTCAA
GTGTGGTTCAACGGAGCATAGCATCTATCAATGCAAGAAAGACACCGGTG
ATGACATGCCGTTTGCAACCTGTTTCATTTGTAAACAGAAAGGACACCTT
TCAAGTAAATGTCCAGACAACCCAAGAGGTTTATATCCTGACGGTGGTGG
TTGTCGATTTTGTGGTTCTGTTGAACATTATCGTCGAGATTGCCCAGAAA
GGAACCCCAACAAGAATAACGGTGAACGCAAACAAACGTTCAAGATGAGA
ACACAGGCTAAAGAGGAAAGTATAGAGGCTATCGATAACTCATCAGACGA
TGAAAGTGATCATAATGAAGCGCCCAAACCAAAAAAAGCTAAAGTCGTCA
AATTTTGAATGACACGATGGGCACGCTTCAAGAACAAACAAGAACATGAT
GCTTCTTCATGGCAAGATTTGAAGAAAGCTAAACAACATAATCGAGGGAA
GAATAACAAGGGCGGAAAGGAGGAAGAAATACCGGAATGGCTAGAGAAAA
GAAGAGCTGCACGTCGTGAACGCAGAAAACGTGGGAAGCCATGCTTTCAT
TGTCGAGAACCAGGCCATATGGCTGCAAGATGTCCGAAAAAAGGCGAAGG
AGAAAGCGCACAAGACATTTGCTTCAAGTGTGGTTCAACGGAGCATAGCA
TCTATCAATGCAAGAAAGACACCGGTGATGACATGCCGTTTGCAACCTGT
TTCATTTGTAAACAGAAAGGACACCTTTCAAGTAAATGTCCAGACAACCC
AAGAGGTTTATATCCTGACGGTGGTGGTTGTCGATTTTGTGGTTCTGTTG
AACATTATCGTCGAGATTGCCCAGAAAGGAACCCCAACAAGAATAACGGT
GAACGCAAACAAACGTTCAAGATGAGAACACAGGCTAAAGAGGAAAGTAT
AGAGGCTATCGATAACTCATCAGACGATGAAAGTGATCATAATGAAGCGC
CCAAACCAAAAAAAGCTAAAGTCGTCAAATTTTGAATGACACGATGGGCA
CGCTTCAAGAACAAACAAGAACATGATGCTTCTTCATGGCAAGATTTGAA
GAAAGCTAAACAACATAATCGAGGGAAGAATAACAAGGGCGGAAAGGAGG
AAGAAATACCGGAATGGCTAGAGAAAAGAAGAGCTGCACGTCGTGAACGC
AGAAAACGTGGGAAGCCATGCTTTCATTGTCGAGAACCAGGCCATATGGC
TGCAAGATGTCCGAAAAAAGGCGAAGGAGAAAGCGCACAAGACATTTGCT
TCAAGTGTGGTTCAACGGAGCATAGCATCTATCAATGCAAGAAAGACACC
GGTGATGACATGCCGTTTGCAACCTGTTTCATTTGTAAACAGAAAGGACA
CCTTTCAAGTAAATGTCCAGACAACCCAAGAGGTTTATATCCTGACGGTG
GTGGTTGTCGATTTTGTGGTTCTGTTGAACATTATCGTCGAGATTGCCCA
GAAAGGAACCCCAACAAGAATAACGGTGAACGCAAACAAACGTTCAAGAT
GAGAACACAGGCTAAAGAGGAAAGTATAGAGGCTATCGATAACTCATCAG
ACGATGAAAGTGATCATAATGAAGCGCCCAAACCAAAAAAAGCTAAAGTC
GTCAAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013856XLOC_013856Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024686-proteinTCONS_00024686-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024686-exon-sc0000507-1491911889:32981..33206TCONS_00024686-exon-sc0000507-1491911889:32981..33206Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1510915933:32981..33206TCONS_00024686-exon-sc0000507-1510915933:32981..33206Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1575043694:32981..33206TCONS_00024686-exon-sc0000507-1575043694:32981..33206Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1491911889:33613..33690TCONS_00024686-exon-sc0000507-1491911889:33613..33690Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1510915933:33613..33690TCONS_00024686-exon-sc0000507-1510915933:33613..33690Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1575043694:33613..33690TCONS_00024686-exon-sc0000507-1575043694:33613..33690Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1491911889:34580..34718TCONS_00024686-exon-sc0000507-1491911889:34580..34718Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1510915933:34580..34718TCONS_00024686-exon-sc0000507-1510915933:34580..34718Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1575043694:34580..34718TCONS_00024686-exon-sc0000507-1575043694:34580..34718Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1491911889:35528..35620TCONS_00024686-exon-sc0000507-1491911889:35528..35620Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1510915933:35528..35620TCONS_00024686-exon-sc0000507-1510915933:35528..35620Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1575043694:35528..35620TCONS_00024686-exon-sc0000507-1575043694:35528..35620Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1491911889:36066..36143TCONS_00024686-exon-sc0000507-1491911889:36066..36143Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1510915933:36066..36143TCONS_00024686-exon-sc0000507-1510915933:36066..36143Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1575043694:36066..36143TCONS_00024686-exon-sc0000507-1575043694:36066..36143Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1491911889:36349..37275TCONS_00024686-exon-sc0000507-1491911889:36349..37275Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1510915933:36349..37275TCONS_00024686-exon-sc0000507-1510915933:36349..37275Clytia hemisphaericaexon
TCONS_00024686-exon-sc0000507-1575043694:36349..37275TCONS_00024686-exon-sc0000507-1575043694:36349..37275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:32981..37275 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.965 59.0632 31.213 25.9048 41.4502 32.7829 47.8381 47.6386 44.0815 35.3078 31.3563 35.1759 21.6643 19.5184 24.4105 27.7381 45.608 40.4756 14.9212 19.0212 30.2846 30.8247 43.0296 36.6491 22.9632 24.5266 17.0557 17.8515 20.3687 22.1681
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
BLAST of TCONS_00024686 vs. Swiss-Prot (Human)
Match: ZCHC9 (Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens GN=ZCCHC9 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.015e-32
Identity = 60/113 (53.10%), Postives = 72/113 (63.72%), Query Frame = 2
Query:  308 CFHCREPGHMAARCPKKGEGESA-QDICFKCGSTEHSIYQCKKDTG---DDMPFATCFICKQKGHLSSKCPDNPRGLYPDGGGCRFCGSVEHYRRDCPERNPNKNNGERKQTF 634
            CFHCR+PGH  A CP   E +     IC++CGSTEH I +CK        + PFA CF+C + GHLS  CPDNP+GLY DGGGC+ CGSVEH ++DCPE      N ER  T 
Sbjct:  130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE----SQNSERMVTV 238          
The following BLAST results are available for this feature:
BLAST of TCONS_00024686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZCHC92.015e-3253.10Zinc finger CCHC domain-containing protein 9 OS=Ho... [more]
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