TCONS_00024684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024684
Unique NameTCONS_00024684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024684 ID=TCONS_00024684|Name=TCONS_00024684|organism=Clytia hemisphaerica|type=transcript|length=1941bp
atagactccctcactcccggctcggCCGACAGCCAcgagatgaatatact
tactctTCTGAAAAATTGTCTCTATTTTGCTTCATTATGGTTTAATCTTT
TTTAAGATTCGCAAATGGTGGTTAAAAGTCCATCTGTATCCCAAGTTCAC
ATCTTCACAGGTGCCCCAAGACTAGTTCATAACATTGAAAATGACAGAGA
AAGACACAAAAGGAGGAATTCCGTTGAAAGCAAATGGAGAACTATCAAAT
ACACACGTCTGGAGCTACATAATCATTTAgttgaaagattttctcaaGAT
AATGATGATTTTTCTGAACTTGCCAATTCAGTTTCAATAAATCAAAGTCA
GCAAAGTTGTCATAACCTTGATTCAATTGACAGGACTACAGCAAATAAAT
ACATTGATTTTGATCAACTTCTCACAAACTCAGAAACAGTAAATTTAGAT
ATTCTATTAGCAacaaaagtacaaaatcaaCAGTCTGACGAGACACCACT
TTCTAAAACTCCAAAGACTCTGCAAAAAGATGAAAGGCAAGAAAGTATCA
CAAAACTTTCAGATATTGCTTTAACGCAACTCAAAGATGTCAAAAGTTCT
GAGGAAAAAGTAAATCTGGTTGTAGTGATACTTCAAAGTACTCCAGTGCG
TGCCATAGCTGTCAATCATGGATTACATGCTGGTAGCAGCATAGATTTAG
CGTCTGTTCTTGTTGGAGATCAAACAGAATTTTATACAACAATTTCATTT
TGGGGAGAGCATTCAACGTTGGTAAGAAATGTTGGAGTTGGAGACGTTGT
TTTGTTGACAGATGTAATGTTTACTGCAACTGGTAATCGCAAAATTGAGG
ACAAGATTTTGAGCAGTATCCACAGACTGCATCATTGGTTACATATTAAT
CACAGTTACTTGTTTTCGCCAAGTGAAGAAACTATCATTACACCTTCTTA
TAATTCTAATACTACAAGTACAAAAGCAGAAAGTGATTTTAATGAAAGAA
GTGAAAAGTTTGATCTCGTGCAAGCAAGACTATGTAACTCAACTCAAAAT
GATTCGCTCTTAGAAGGCCATTATTTTGGGTATTTAGATTTAGAGGACAC
TCATGGATTAAAAATGAGACTGAATATCACAAGACAGCAATGGAATCATA
TAACAGAAACAACAAAGGGAGAATCTAATGTTGTCATCAGAGCTACACAA
GTCAACCAAAAACTTAACAAATATTCAAACAAACAAGAGCTATATAGTAC
CAATGAATCTAGAATCGAATCAGTTGAATCTACCAGCAACAATGATCATG
AAGTTTTTTGTGATGGTTATAATGTTGAACAGGTTGACTTTCTTGATCAT
GATGGCTCCATTGTTTGCAGTAGAGATAATTCAAATGTACATTTACCCTT
TGAAAATATCGAGAATACTGTTTTTGAAAGTTGCATGTTTTGCTTTTATG
CTGTGCGTAAAGGAATCGTTTCTCATAATAAAGGCTCGGTCAAAGTTAGA
TACTGTCCTAAATGTGGAAAAGAATACAAGATACATTTGatgtttataaa
aatcaaagtaCGCTTTCAAAGATCAAAAGTGATACATTTTGGAGATACTA
GACCTCAGATGATTAATGCTATACTTCCATATGATATAACTGCCGAGAAT
TTCAAAGAGTCTATATTATCTGGACAATATGGAATTCTGTCAGAAGATTT
TCAGCAGAATCTTAAAGCTGATTTGGTCATGTTATATTCCAAATTTTATG
CATTGAAACTAACAAAAGAAACTGAGGAATTCTCAATGGTATTCTCAGAT
GATATTTTTACAGTCAAAGAGATGTCATCCatataaatgaaaatcaacAG
TTTATTTCTTCATAAGTCATTTTTGAACTATAGGCTCCATTGCACTGTTT
TTCAATATTGTGATGTAAAAGTTATATATCATAAATATATG
Run BLAST on NCBI

transcript from alignment at sc0000507:17928..21239+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024684 ID=TCONS_00024684|Name=TCONS_00024684|organism=Clytia hemisphaerica|type=transcript|length=3312bp|location=Sequence derived from alignment at sc0000507:17928..21239+ (Clytia hemisphaerica)
atagactccctcactcccggctcggCCGACAGCCAcgagatgaatatact
tactctTCTGAAAAATTGTCTCTATTTTGCTTCATTATGGTTTAATCTTT
TTTAAGATTCGCAAATGGTGGTTAAAAGTCCATCTGTATCCCAAGTTCAC
ATCTTCACAGGTGCCCCAAGACTAGTTCATAACATTGGTAAGATTCTTTT
TCTTAGAATAAGCCCTTTGAAGATTTCAGATGCCAATGTTCATATTTGCA
GAAAAACTGctaacttaaaattttttaaaccatTGATTCATACTGATAGA
TAATTATGTACATACTTTCAGACATAATTATTACCAGGGATTTTCTGCTA
CGAGATAACGTATGAAAGTGCTCTATTTGAGTAGCTTTGTTCTTATAACA
CTTGAGCAGTCTTGATATATTTTCTTAGGTAGAAATGTCCAGTATACAGT
GCAATATTTTAGCACTATAGTCTacaataaaagcaaaattgtcTGGAAAC
TTTGCAACCCCTAAACTCCACCAGTTCTCTTCCCTGGAACCTCCTAccct
aaatatttttcattgcaCTTGAGGCACATTCAAAACCCATTACCTTAAAG
ATGGTAGCAGCCTCAAATCCTGGAAATTTGCCTGATTGTAAtgccaagtt
ttcaaaaattttatattctTCAGAAAATGACAGAGAAAGACACAAAAGGA
GGAATTCCGTTGAAAGCAAATGGAGAACTATCAAATACACACGTCTGGAG
CTACATAATCATTTAgttgaaagattttctcaaGATAATGATGATTTTTC
TGAACTTGCCAATTCAGTTTCAATAAATCAAAGTCAGCAAAGTTGTCATA
ACCTTGATTCAATTGACAGGACTACAGCAAATAAATACATTGATTTTGAT
CAACTTCTCACAAACTCAGAAACAGTAAATTTAGATATTCTATTAGCAac
aaaagtacaaaatcaaCAGTCTGACGAGACACCACTTTCTAAAACTCCAA
AGACTCTGCAAAAAGGTAAAATCGTTagcattgtttttaaaaacagcaaa
aaatacattaaataattcttttatATCAAGCctgaagttttatttaatta
ctaaaaaatgcactttaaaattcaaaacaattttaGAGGCTCATGGAAAG
ATTACATTTTAACGTTTTATATGGTTcttagaaatttttaaaattcaatt
acAGATGAAAGGCAAGAAAGTATCACAAAACTTTCAGATATTGCTTTAAC
GCAACTCAAAGATGTCAAAAGTTCTGAGGAAAAAGTAAATCTGGTTGTAG
TGATACTTCAAAGTACTCCAGTGCGTGCCATAGCTGTCAATCATGGATTA
CATGCTGGTAGCAGCATAGATTTAGCGTCTGTTCTTGTTGGAGATCAAAC
AGAATTTTATACAACAATTTCATTTTGGGGAGAGCATTCAACGTTGGTAA
GAAATGTTGGAGTTGGAGACGTTGTTTTGTTGACAGATGTAATGTTTACT
GCAACTGGTAATCGCAAAATTGGTAAAACAACAGATTCATCAACTTTATG
TAATTTTAAGAATGTAAATGCTCTGCCAAAACCATCAAAAGGTAAAACAT
CATATTCCCAATATGGTTCATGAATATGTTTGCTCTTGAAAAAACAGTTT
CAAAAGGGCCAATATACCAATCATTTATGCATTTTGAGCACTCTTTGGCT
GTTATCAAATGGTGCCGGGTTGGTGGTGCGTACCTGTGGTATCCAGTCAA
AAAATTAATTCCGTTCACTATGCTGAATATTGGAAACATTTTCATCTCAA
AAGTCCATTCCTTTTCAGAGAAGAAAAGCTTTCCTTTGACCAAGCAATGT
CTATGAAACAATAAGCACCTGTcttaaaaaatatgtttttaaaattttct
gcaCGTGAATATTACTGTTTTGTTCTGAAAGTATGCATTTAATATGGTTT
TGGAATGACTGAAAAAAGTAGTTAAGAAATATTATTCACTTTAGAAATAT
TATCTTTTTCATCACTGAAATAACCCATTAAACTTTACTGTTTCAGAGGA
CAAGATTTTGAGCAGTATCCACAGACTGCATCATTGGTTACATATTAATC
ACAGTTACTTGTTTTCGCCAAGTGAAGAAACTATCATTACACCTTCTTAT
AATTCTAATACTACAAGTACAAAAGCAGAAAGTGATTTTAATGAAAGAAG
TGAAAAGTTTGATCTCGTGCAAGCAAGACTATGTAACTCAACTCAAAATG
ATTCGCTCTTAGAAGGCCATTATTTTGGGTATTTAGGTAAGATTGGATAT
CACTTCATCTCGTTACGTATAAACTTATCGTTGTTTTTTGGATTTAAAGT
CTATAGCTCATTGTATTTTCTTGTTTAAATACTGAATCACCATCAGATCT
TAATTGTTGTCTTAAAAGCCATACTTAGGTGTAACCattttttcaatgtt
atttGCAGATTTAGAGGACACTCATGGATTAAAAATGAGACTGAATATCA
CAAGACAGCAATGGAATCATATAACAGAAACAACAAAGGGAGAATCTAAT
GTTGTCATCAGAGCTACACAAGTCAACCAAAAACTTAACAAATATTCAAA
CAAACAAGAGCTATATAGTACCAATGAATCTAGAATCGAATCAGTTGAAT
CTACCAGCAACAATGATCATGAAGTTTTTTGTGATGGTTATAATGTTGAA
CAGGTTGACTTTCTTGATCATGATGGCTCCATTGTTTGCAGTAGAGATAA
TTCAAATGTACATTTACCCTTTGAAAATATCGAGAATACTGTTTTTGAAA
GTTGCATGTTTTGCTTTTATGCTGTGCGTAAAGGAATCGTTTCTCATAAT
AAAGGCTCGGTCAAAGTTAGATACTGTCCTAAATGTGGAAAAGAATACAA
GATACATTTGatgtttataaaaatcaaagtaCGCTTTCAAAGATCAAAAG
TGATACATTTTGGAGATACTAGACCTCAGATGATTAATGCTATACTTCCA
TATGATATAACTGCCGAGAATTTCAAAGAGTCTATATTATCTGGACAATA
TGGAATTCTGTCAGAAGATTTTCAGCAGAATCTTAAAGCTGATTTGGTCA
TGTTATATTCCAAATTTTATGCATTGAAACTAACAAAAGAAACTGAGGAA
TTCTCAATGGTATTCTCAGATGATATTTTTACAGTCAAAGAGATGTCATC
CatataaatgaaaatcaacAGTTTATTTCTTCATAAGTCATTTTTGAACT
ATAGGCTCCATTGCACTGTTTTTCAATATTGTGATGTAAAAGTTATATAT
CATAAATATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013854XLOC_013854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024684-exon-sc0000507-1491911889:17928..18114TCONS_00024684-exon-sc0000507-1491911889:17928..18114Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1510915933:17928..18114TCONS_00024684-exon-sc0000507-1510915933:17928..18114Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1575043694:17928..18114TCONS_00024684-exon-sc0000507-1575043694:17928..18114Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1491911889:18601..18942TCONS_00024684-exon-sc0000507-1491911889:18601..18942Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1510915933:18601..18942TCONS_00024684-exon-sc0000507-1510915933:18601..18942Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1575043694:18601..18942TCONS_00024684-exon-sc0000507-1575043694:18601..18942Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1491911889:19132..19449TCONS_00024684-exon-sc0000507-1491911889:19132..19449Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1510915933:19132..19449TCONS_00024684-exon-sc0000507-1510915933:19132..19449Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1575043694:19132..19449TCONS_00024684-exon-sc0000507-1575043694:19132..19449Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1491911889:19974..20213TCONS_00024684-exon-sc0000507-1491911889:19974..20213Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1510915933:19974..20213TCONS_00024684-exon-sc0000507-1510915933:19974..20213Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1575043694:19974..20213TCONS_00024684-exon-sc0000507-1575043694:19974..20213Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1491911889:20386..21239TCONS_00024684-exon-sc0000507-1491911889:20386..21239Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1510915933:20386..21239TCONS_00024684-exon-sc0000507-1510915933:20386..21239Clytia hemisphaericaexon
TCONS_00024684-exon-sc0000507-1575043694:20386..21239TCONS_00024684-exon-sc0000507-1575043694:20386..21239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000507supercontigsc0000507:17928..21239 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1992	11.5675	6.35948	5.79456	13.6439	9.42202	10.4479	11.2018	5.95765	4.45315	5.01791	4.71657	3.65572	5.0731	5.25427	5.70027	4.61096	5.21114	4.23629	1.80628	8.188	5.46057	20.6637	19.5196	7.60817	11.7556	3.63233	2.97651	9.87234	12.3535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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