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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024398 ID=TCONS_00024398|Name=TCONS_00024398|organism=Clytia hemisphaerica|type=transcript|length=1196bp
GAAATCAATCGCTGATATTGGCTTGGTGGGCTTTCCGAATGCTGGTAAAT
CTTCTCTCCTCCATTGCATTTCACGTGCAACACCAAAGATTGGAGATTAC
CCTTTCACAACATTGAAACCAAACATCGGTGTGATGAATTTAAAAGATGA
CTTGACTGTTTCAGTTGCTGATATCCCTGGCATAGTCAAGGGAGCCCACG
AAAACGTTGGTCTTGGACATGAATTCTTACGCCACGTTGAACGTTGCCAT
ATGTTAATGTATGTTATGGATTGCTCATCACCGGACATGCTTTCCCAGTT
CGAAATCCTGAAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAA
TATCATCCATCTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGAC
GAAATGAGAAATAACATACAACAACATGTAAACATGCCTGTTGTCCCACT
CTCTGctaaattcaatcaaaatattgaaGAGTTGAAAAGTCTTATATTGC
AGAAAAGGAAATTTAAGCATACTAGCTAATgagaaaagaaaaacgaaaaa
tagaTTATATGTTATGGATTGCTCATCACCAGACATGCTTTCCCAGTTCG
AAATCCTGAAAACGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATA
TCATCCATCTTCATAGCTAATAAAATCGATTTGATACAAGACCAAGACGA
AATGAGAAATGACATACAACAACATGTAAACATGCCCTTTGTCCCACTCT
CTGCTAAATTCAGTCAAAATATTGAAGAGTTGAAAAGTCTTATATTGCAG
AAATGGAAATTTAAGCATACTGGCTAAtgggaaaagaaaaatgaaaaata
gattaTATGTTGTGGTTTGTTCATCACCGGACATGCTTTCCCAGTTCGAA
ATCCTGAAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATC
ATCCATCTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACGAGA
TGAGAAATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTCTCT
GAGTAAATTCAGTCAAAATATTGAAGAgttgaaaaatcttttattgCAGA
AATGGAAATTTAAGCATACTGGCTaatgagaaaagaaaaatgaaaaatag
attatttaggttgtattttatttcttttaaagtatGATGTTTGGTG Run BLAST on NCBI transcript from alignment at sc0000491:51610..55399- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024398 ID=TCONS_00024398|Name=TCONS_00024398|organism=Clytia hemisphaerica|type=transcript|length=3790bp|location=Sequence derived from alignment at sc0000491:51610..55399- (Clytia hemisphaerica)
GAAATCAATCGCTGATATTGGCTTGGTATGAGCATTTATTTGAATAGAGA
ATTAAAAATGACATCACTAGCCCCCTGTTGCAATGAAATTGCGCCAAAAA
TGATTTTTTTTTGTCCAATCTCTCAAAGGAATGCTCTAAATAAGTTTGAG
TTTATCAACCCAGTGATATTCATAATGGAAGTTAAATCGTAGCTTGGATC
ATGAGATTTACGTTTGGCTACGTTTCGAGAGATTCTTCTCCCATCATCGG
GAAATGTAGAGGATGTTTTCTCCACTGTTTGTACTAAGACATTCTGTTAT
GGCGCGCCAAAGCGGAAATAAATACTATCTCTCATTTCGCGACACTACCT
TTCATTTCACGACACTATCTTTCACTTTGCGGCACTATCTTTCATTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCGGCACTATCTTTCATTTCGCGACACTATC
TTTCATTTCGCGACACTATCTTTTATTTCGCGACACTATCTTTCATTTCG
CGACACTATCTTTTATTTCGCCACACTATCTTTATTAAAACGACACTATC
TTTTTTAAAACGACACTATCTTTTTTAAAACGATACTATCTTTCCAAAAA
ACATTATCTTAATTGAAACAATACTATCTTTTTTACGGGATACTATCTTT
TTTATGGAAGCCGAGAAGTGCCATCGACAAAAAAATATTTAATTTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAGTGCCGCGAAATGAAAGATAGTGC
CGCGAAATGAAAGATAGTGCCGCGAAATGAAAGATAGTGCCGCGAAATGA
AAGATAGTATCGCGAAATGAAAGATACTATTTATTTCCGCTTTGGCGCGC
CATATTCTGTACCCATAATTATCAAGTGTAATTTCCTTGCAAGGTGTGAA
TCCCCATGTTATCATAGTTGTAAGGTAAAATAGCTCTTGAACTTATGAGA
TTACTCATTACTGTGATTTCCATTTTGCCTCTCTGTTCGGTTGGGAACCC
AAATATTCTCTCAAATGAACTTTGTTTGCATTTATAGGTGGGCTTTCCGA
ATGCTGGTAAATCTTCTCTCCTCCATTGCATTTCACGTGCAACACCAAAG
ATTGGAGATTACCCTTTCACAACATTGAAACCAAACATCGGTGTGATGAA
TTTAAAAGATGACTTGACTGTTTCAGGTTTTTATCTTTCGTTTCCTTGTG
TTAACACATTTCTGCCTATTACTTCTTAGTAACATTACCTGACATTCTAA
GAATTTCATAAAAGTTTGCTTGATTTTGCTCCTCAATTTCTGAATATATG
GGGTTTCAAATAATTTTCATGACTTTTAGTGGATCATGTAAATTTGAGAT
ATTTTATTCTTGTTTACTCATTAAAAAACCCAAATTATTTTTATTTGTAA
CCGTTTAGTTGCTGATATCCCTGGCATAGTCAAGGGAGCCCACGAAAACG
TTGGTCTTGGACATGAATTCTTACGCCACGTTGAACGTTGCCATATGTTA
ATGTATGTTATGGATTGCTCATCACCGGACATGCTTTCCCAGTTCGAAAT
CCTGAAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCAT
CCATCTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACGAAATG
AGAAATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTCTCTGC
TAAATTCAATCAAAATATTGAAGAGTTGAAAAGTCTTATATTGCAGAAAA
GGAAATTTAAGCATACTAGCTAATGAGAAAAGAAAAACGAAAAATAGATT
ATATGTTATGGATTGCTCATCACCAGACATGCTTTCCCAGTTCGAAATCC
TGAAAACGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCATCC
ATCTTCATAGCTAATAAAATCGATTTGATACAAGACCAAGACGAAATGAG
AAATGACATACAACAACATGTAAACATGCCCTTTGTCCCACTCTCTGCTA
AATTCAGTCAAAATATTGAAGAGTTGAAAAGTCTTATATTGCAGAAATGG
AAATTTAAGCATACTGGCTAATGGGAAAAGAAAAATGAAAAATAGATTAT
ATGTTGTGGTTTGTTCATCACCGGACATGCTTTCCCAGTTCGAAATCCTG
AAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCATCCAT
CTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACGAGATGAGAA
ATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTCTCTGAGTAA
ATTCAGTCAAAATATTGAAGAGTTGAAAAATCTTTTATTGCAGAAATGGA
AATTTAAGCATACTGGCTAATGAGAAAAGAAAAATGAAAAATAGATTATT
TAGGTTGTATTTTATTTCTTTTAAAGTATGATGTTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024398-exon-sc0000491-1575043694:55375..55399 | TCONS_00024398-exon-sc0000491-1575043694:55375..55399 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1575043694:52874..53012 | TCONS_00024398-exon-sc0000491-1575043694:52874..53012 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1575043694:51610..52641 | TCONS_00024398-exon-sc0000491-1575043694:51610..52641 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1510915933:55375..55399 | TCONS_00024398-exon-sc0000491-1510915933:55375..55399 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1510915933:52874..53012 | TCONS_00024398-exon-sc0000491-1510915933:52874..53012 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1510915933:51610..52641 | TCONS_00024398-exon-sc0000491-1510915933:51610..52641 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1491911889:55375..55399 | TCONS_00024398-exon-sc0000491-1491911889:55375..55399 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1491911889:52874..53012 | TCONS_00024398-exon-sc0000491-1491911889:52874..53012 | Clytia hemisphaerica | exon |
| TCONS_00024398-exon-sc0000491-1491911889:51610..52641 | TCONS_00024398-exon-sc0000491-1491911889:51610..52641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000491 | supercontig | sc0000491:51610..55399 - |
Blast
BLAST of TCONS_00024398 vs. Swiss-Prot (Human)
Match: MTG2 (Mitochondrial ribosome-associated GTPase 2 OS=Homo sapiens GN=MTG2 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.726e-48 Identity = 79/161 (49.07%), Postives = 115/161 (71.43%), Query Frame = 2
Query: 2 KSIADIGLVGFPNAGKSSLLHCISRATPKIGDYPFTTLKPNIGVMNLKDDLTVSVADIPGIVKGAHENVGLGHEFLRHVERCHMLMYVMDCSSPDMLSQFEILKKELDLYKAGLSTISSIFIANKIDLIQDQDEMRNNIQQHVNMPVVPLSAKFNQNIEEL 484
K++A G+VGFPNAGKSSLL IS A P + YPFTTLKP++G+++ + L ++VADIPGI++GAH+N GLG FLRH+ERC L++V+D S P+ +Q + LK EL++Y+ GLS +ANKIDL + Q + + ++ H+ V+ LSA +N+E+L
Sbjct: 222 KTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANL-SQLRDHLGQEVIVLSALTGENLEQL 381
The following BLAST results are available for this feature:
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